Reference sequence (1): 9caud-b5a5z7 Identities normalised by aligned length. Colored by: consensus/70% and property |
1 9caud-b5a5z7 100.0% ----------------------------------------------------------------------------------------MTTYGELKALRL----GVKYVRHTLFTVAGTW 2 9caud-d3jz76 20.4% ----------MSLKVGS----SGEVVSRWIRVMKARFVS-YA-----GKLAVD-GYFGLDDAEVQREYERRTGQT----------PDGIVTDGDLAYL--------LPRKPWLFTVHGTG 3 9caud-g1jv64 20.2% ----------MSLKVGS----SGEIVNRWIRVMKARFIS-YA-----GKLRED-GYFGLDDAEVQREYERRTHQT----------PDGIVTDGDLDYL--------LPAKPWLFTVHGTG 4 bpmd2-vg12 27.3% -----------------------------------------------------------------------------------------------------------MSKPWLFTVHGTG 5 bpml5-vg12 28.4% -----------------------------------------------------------------------------------------------------------MSKPWLFTVHGTG 6 9caud-h9nci8 21.5% ----------MPLKLGS----SGELVNAWIRTMNSRFES-YSKAYDGGPLRED-AYFGYDDAEVQREYERRTGQP----------VDGEVSDHDLVALGL------ITEKPWLFTVHGTA 7 bpmb2-q857l1 21.3% ----------MPLRVGSNDANTGGLVSRWQKTMLARYAA-YAKAYDGGPLRVD-GYFGYDDADVQREYERRTHQV----------VDGEVSDADLRALGL------EAAKRWLFTVHGTG 8 9caud-e0ypf9 30.9% ------------------------------------------------------------------------------------------------------------VKPLLFTVHGTG 9 9caud-h6u5f8 21.4% MAKGL-NGEWIGYGPGD----SGTQVLAAREKLKAKFS--YGK-----HLKLT-TLYDAELLPVLVEFQLRTNVQRALAGKALLRVDGILDYATQVALGIV--APPTLVKPLLFTVHGTG 10 9caud-g3me08 21.8% MAVGP-DGKWIGYGLGD----SGIPVLTARQKLKGKFS--YAK-----HLRET-TLYDNELLPVLIEYQLRKNVEFAKAGKKLLRTDGILDYATQVAIGVV--IPVALVKPLLFTVHGTG 11 9caud-g8i4e1 21.9% M-------TWIGWQQGM----AGEPVAAAKRELRRKFS--YAK-----HLDDS-DVFDLELLAVLIEYQQKKNAT---GYTPRLREDGVLDWATQVAIGTVQT-GPPPKAGTLFTVQGTG 12 mycab-h0i9i3 22.8% --------------------------------MLARYAS-YAKAADGGPLKVD-SYFGYDDQAVQKEYQRRTGQV----------QTGVVSSDDLIRLGV---------TPVLFTVQGTG 13 9caud-g1d5a5 26.3% M-------AWIGWQEGM----EGLPVLAAIGELRAKFS--YGK-----QLGLT-KKFTPALTEAVKTFQRNKGGL---------RTDGVLDYETQKALGV-----LEALKPWLFTVAGTG 14 9caud-g8ie82 24.8% --------MWIGWQEGM----SGRPVLAAKGELRAKFS--YGK-----NLDLT-EHFGPDLTEALKTFQRNKGGL---------RTDGVLDYATQKALGV-----LEALKPWVFTVAGTG 15 9caud-g1jvt5 21.8% MRVPPVTGEYVGLGLGD----SSEEIRKIKEFMRKKFRS-YA-----GHLADT-PHYDEQMTAVVAEMQGRYNQDGKLATGK--YTPGIINAETKYVMNYLERPAGPDNRPVLFTVCGTG 16 9caud-q19zy6 26.4% ------------------------------------------------------------------------------------------------------------------------ 17 9caud-q856m4 24.6% -----------------------------------------------------------------------------------------------------ERPPGPDTRPLFITVCGTG 18 9caud-g8ib49 23.0% ----------MPLKLGD----RNPTVRRWREVMAARFAG-YARVH--GPLPTDTDEFGPRAEAWQTEYESRTFQP----------LDGIVSDDDLRALGI---PAPEDTRPVLLTVSGTG 19 9caud-f6m823 30.7% ----------MPLQVGS----QGELVNQWVRTMNRRFSS-YSREKDGTPLKVD-GYFGYPDRDVQREYERRTNQV----------QDGIVSDGDLAALGLIAT-PPAEELPVLFTVSGTF 20 9caud-g1fga7 21.8% ----------MPLRLGD----RNESVRQWRIKMNAWFGPLYTRLI--GPLPMDTDEFGPRAKAWQEEYERRTNQV----------VDGEVSDNDLRALGV-----PVPTKVVIFTVAGTG 21 9caud-g8i5a5 22.1% ----------MPLRLGD----RNESVRQWRIKMNAWFGPLYTRLH--GPLPMDTDEFGPRAKSWQEEYERRTNQP----------VDGEVSDNDLRALNV-----PVPTKVVIFTVAGTG 22 mycab-i0p9q7 29.9% ------------------------------------------------------------------------------------------------------------------------ 23 9caud-g1d011 22.2% MSLWP----------------------EIRAMLNGEF---YVP------------------------------------------------------------------AGTIITANGTG 24 mycxe-i0rp64 18.8% --------------------------------MTAAVT--WANIMD------------------------------ALAG---VSSTSAFVDHTGVSWAI-----SGELPIVLMTWAGTG consensus/100% ........................................................................................................................ consensus/90% ...............................................................................................................hhhThtGTh consensus/80% .............................................................................................................t.hlhTVtGTu consensus/70% ................................h.t.h...as...............................................hs.tp...h...........+shLFTVtGTG 1 9caud-b5a5z7 100.0% ADM-WSGY--PADVARLVD---EDLFRWQPVW--YPASFG--PVGN---P---LGRSYQESVQDGVKELIRLINA----------TP-GTFALVGYSQGAEVVSRVLLEIL---FGSLRH 2 9caud-d3jz76 20.4% MPD-PTGPGLPADVARDV----LDIYNWQPIG-NYPAAAF--PMK--------------PSYDKAIAELVLQIDQ------KLAGND-DEFSMAGYSQGAIAVSYVLKHELINPKGRLHK 3 9caud-g1jv64 20.2% QAD-PLGPGLPADTARDV----LDVYRWQPIG-NYPAAAF--PMK--------------PSYDKAIEELVKQIDL------KLAGND-DEFSMAGYSQGAIAVAYVLKHELLNPKGRLHK 4 bpmd2-vg12 27.3% QPD-PLGPGLPADTARDV----LDIYRWQPIG-NYPAAAF--PMW--------------PSVEKGVAELILQIEL------KLDADPYADFAMAGYSQGAIVVGQVLKHHILPPTGRLHR 5 bpml5-vg12 28.4% QPD-PLGPGLPADTARDV----LDIYRWQPIG-NYPAAAF--PMW--------------PSVEKGVAELILQIEL------KLDADPYADFALAGYSQGAIVVGQVLKHHIINPRGRLHR 6 9caud-h9nci8 21.5% QPD-PLGPGLPADTAKQV----LDLYRWQPIG-NYPAKAF--PMW--------------PSIMQGYAELVKQIEE------KLSRDN-SDFALAGYSQGAVVVGQVLKHEIINPNGRLHK 7 bpmb2-q857l1 21.3% QAD-PLGPGLPADTARAV----LDKYTWQPIG-NYPARAF--PMW--------------SSIMDGARELRSQIAS-----------KSGEVNLAGYSQGAVVVGQVLKHDIMDPKGSLHH 8 9caud-e0ypf9 30.9% QPV-PDGPGLPADTARNV----LDKWDWQPIG-NYPAEPF--PMW--------------PSILKGVAELRVQIRK------AFAANPNRKIGFAGYSQGAVVVSLVMKYDFMAEGGEFNA 9 9caud-h6u5f8 21.4% QPV-PDGPGLPADTARNV----LDKWDWQPIG-NYPAEPF--PMW--------------PSILKGVAELRVQIRK------AFAANPGRKIGFAGYSQGAVVVSLVMKYDFMAEGGEFHE 10 9caud-g3me08 21.8% QPV-PDGPGLPADTARAV----LDKWDWQPIG-NYPADAF--PMW--------------PSILEGVAELRDQIRK------ALAANPRRKLGFAGYSQGAVVVSLVLKYDFMAEGGEFHD 11 9caud-g8i4e1 21.9% VDM-WTGP--PADTARAV----EGDWEWQPIG-NYPASPF--PMW--------------ASIWQGIEELRFQIRR------HATEKPGKAIALAGFSQGAVVVSWVYKWDIALPGGMLHD 12 mycab-h0i9i3 22.8% VDM-WTGY--PADTARAC----LDLCHWQPIG-NYPADPF--PMW--------------RSVLQGIAELRLQLRD------YNNRYPGYRIWLAGYSQGAIVTSWVYKHDIVDPSGILHD 13 9caud-g1d5a5 26.3% AFW-DAGY--PADIARAV----ADLYRWQGV--NYPATAF--PMG--------------DSVDAGIAELVKLIKQ------RLDRYPAAKFVMIGYSQGAIVTSMVWKRYI---KG--TS 14 9caud-g8ie82 24.8% AGW-DAGY--PAEVARAV----LDLYRWQGV--NYPAKPF--PMG--------------SSVDAGIAELKKLLRE------RMDRYPAARFVLIGYSQGAIVTSMVWQNFI---KG--SD 15 9caud-g1jvt5 21.8% VPW-WVGP--DAETARQV----EDLYRWQPVG--YPAAPF--PMG--------------PSIEAGKAELRAQINRMEPGFELRKQVERNGMVLAGYSQGAIVTSEVWEDDIRTSGPIVGW 16 9caud-q19zy6 26.4% ------GP--DADTARAV----EDKYLWQPVG--YPAAPF--PMG--------------KSIAAAITEAHNQANR------WRQRIETHGAALAGYSQGAVVVSELWMNHIAPETGSLHW 17 9caud-q856m4 24.6% VPW-WVGP--DADTARAC----EDKLFWQPIG--YPAKNF--PMG--------------KSIAAGIDQCHVQFNRADPGFMHRQRIERNGVVLGGYSQGAVVVSELWENNIKPANGSLHW 18 9caud-g8ib49 23.0% VPW-WVGP--DADVARRL----GDVYLWRPVGPPYTAQAF--PMG--------------PSVANGVTEATRILEE------ERQRIERYGLSMIGYSQGAIVTSELWEYHIKPVTGRLHW 19 9caud-f6m823 30.7% ADM-WSGY--PADCARAL----TGVYYWQPV--YYPAAAF--PME--------------PSVNEGVAELISLINK---------LAPGRKFALCGYSQGAIVCSLVLIEIL---FGSLSH 20 9caud-g1fga7 21.8% ARW-DQGY--PFDLGRWQD---QSRVILQPIG--YRAAVF--PMG--------------PSVNEGEVELIRQMHI------HLDRDPSLNFILIGYSQGAIVTSRVLRRMM---SGDLAH 21 9caud-g8i5a5 22.1% ARW-DQTY--PYDLGRWQD---QNRVILQPIG--YPAATF--PMG--------------PSVDKGEAELVNQMRR------HLDANPSLNFILVGYSQGAIVTSRVLRRMM---SGDLAH 22 mycab-i0p9q7 29.9% -----------------------------PPG--YTGSFG--PIPGGGKPPNFEGLSYQESVDAGVDYAVDVVNR----------TP-GPLVLGGYSQGAELASRLSQEFI---NGRLAT 23 9caud-g1d011 22.2% VPD-GAGPGFGADLARELERVAEGLFVWKWI--NYPAAVF--PMR--------------PSINALHLALKEMIRA----------TP-GNLVLSAYSQSAVAFAYVWRDDILNPDGELHD 24 mycxe-i0rp64 18.8% SAMDNTGWPQPAAVAQAAAAAFPNVFTWQPVG-NYPASIFNPNMG--------------ASALDGKNEGVRL---------ATDVWPNNLIIPIGYSQGAICGSWWWRDFILA-NG---- consensus/100% ..................................Y.ut.h..sh................Sh.th...hh....................h...uaSQuA.hhu.h....h....s.... consensus/90% ......G...sh-hu+.......shh.hpsl...YsAt.F..PMh...............Sh.tuhtphh..hp...............th.hhGYSQGAlssu.lh...h...tG..t. consensus/80% ......G...sADhARth.....shh.WQPlh..YPAtsF..PMh...............Sl.tGhtEhh..hp..............tthshhGYSQGAllsu.lhp..h...tG.ht. consensus/70% .s....G...PADsARtl.....DhahWQPlG..YPAssF..PMh..............sSl.pGlsELhh.lpp......hhtt.s.tphshsGYSQGAlVsS.Vhcp.lh..pGpLpp 1 9caud-b5a5z7 100.0% R--LKDFIGGGCFGNPYRAKGVSYP----GSGLPTSGHGIAPVNLAPD--------ILPA----EM---WEEWWNEG------DLYAQNLDG--------KSGEIITSFYDILTKLQFHD 2 9caud-d3jz76 20.4% Y--VHRLKKVVLWGNPMRQKGFAHFDEWIHPVAGPDTMGILEDRLEA----------LEQAMKVYGFE-VRDYAHDG------DMYASIKED--------DMHEYEVAIGRIVME----- 3 9caud-g1jv64 20.2% Y--VSRLKKVVMWGNPMRQKGFAHFDEWVHPIAGPDTMGILEDRLEN----------LEQAMQQYGFE-VRDYAHDA------DMYASIKED--------DMHEYEVAIGRIVMT----- 4 bpmd2-vg12 27.3% F--LHRLKKVIFWGNPMRQKGFAHSDEWIHPVAAPDTLGILEDRLEN----------LEQ----YGFE-VRDYAHDG------DMYASIKED--------DLHEYEVAIGRIVMK----- 5 bpml5-vg12 28.4% F--LHRLRKVIFWGNPMRQKGFAHTDEWIHQVAASDTMGILEDRLEN----------LEQ----YGFE-VRDYAHDG------DMYASIKED--------DMHEYEVAIGRIVMS----- 6 9caud-h9nci8 21.5% F--LHRLKKVVFWGNPMRQKGIAHFDEWIHPVAGPDTMGILEDRLEN----------LEQ----YDFE-VRDYAHDG------DMYASIKED--------DMHEYQVAIGRIVMN----- 7 bpmb2-q857l1 21.3% R--LGDVRKVVLWGNPMRQRGIAHFDEWIHPVAGPDSYGILDDRLEG----------LEK----APFE-IRDYAHAG------DMYASITDG--------DKDEYKIAICKIVMT----- 8 9caud-e0ypf9 30.9% LYKAGQVIAVVTWGNPMRERGVQHSDGT-KQVAPADTEGILEDRLQG----------TPA----M----WREYAHKG------DMYAACELTG------VQRGDNKRAI----------- 9 9caud-h6u5f8 21.4% QYKAGQVIAVVTWGNPMRERGVQHSDGT-KQVAPADTEGILEDRLEG----------TPA----M----WREYAHKG------DMYAACELTG------VQRGDNKRAICKIVM------ 10 9caud-g3me08 21.8% QYEAGQVLAVVTWGNPMRERGVQHGDGW-KETAPADTEGILEDRLEG----------TPA----F----WREYAHKG------DMYAACELTG------VQRGDNKRAVCKIVM------ 11 9caud-g8i4e1 21.9% L--LPQVAAGVTWGNPMAEKGKFHGNRF-AGWPVPAGMGINRDRLEN----------TPA----L----WLDFGHGRNSPWGQDIYCDRPDN--------LAGQDMELICDLVM------ 12 mycab-h0i9i3 22.8% L--LPQVKRGVTWGNPMRELHKANGNVR-AGWVVPDGQGILYDRLQG----------TPD----Y----WLDFAHGANSEWGRDLYTDTEVG--------PRGDNESAICDIIM------ 13 9caud-g1d5a5 26.3% L--EERIIGSITYGNPCRELGVANGNVA-EGIPVPEGRGIADDRLQS----------TPL----W----WYDFAHGANSPFGRDIYTDTPDD--------DAGEMMTAVYRAVQK----- 14 9caud-g8ie82 24.8% L--EARIIGSITYGNPCRELHVANGNVA-EGIPVPEGRGISDFRLRS----------TPS----W----WYDFAHGANSRFGRDIYTDTPDD--------DAGEMMTAIYRLVQD----- 15 9caud-g1jvt5 21.8% A--KDHVLKAVAWGNPNREQGKAYPDAG-APLAAADSAGITGRLMTD----------TPD----W----WRNYAHQG------DLYTATRPG--------ESREDKVAIWQIVR------ 16 9caud-q19zy6 26.4% M--KPHIEKAVTWGNPNRELGHVWADHGGSPMAPSNTQGVSSNGMRD----------TPP----W----WRDYAHQG------DLYACTEPG--------DTQEVRNAIWQIVR------ 17 9caud-q856m4 24.6% A--KDYVVKAVTWGNPNREVGAVWPDYGGSPMASLTSQGVSSTGMRD----------TPS----W----WRNYAHAG------DLYAAAEPG--------DSQQDKNAIWQIIR------ 18 9caud-g8ib49 23.0% A--KDHVRGAVTFGSPMRETGKVWPDPG-GQMPSAKSHGIADQLMVN----------TPD----W----WRNYAHKG------DLYTDCE-G--------DSGEMKTAIYKVVM------ 19 9caud-f6m823 30.7% R--KGDLLGGSMFGNPMRQAGVSF-----PGGRDPGGRGIALEQLKV----------TPP----N----WFEYADPD------DIYAATPTG--------AGGEEMSSIYAVVM------ 20 9caud-g1fga7 21.8% Y--YDRCIAGVTFGNPMRERGHF------VGSNDPGGQGLDPKPLVN----------TPT----W----WYDYAAKG------DIYSSGPGNDD-----KQAAEHMTAIYQAVM------ 21 9caud-g8i5a5 22.1% Y--YNRCIAGVTFGNPMRERGHF------VGVNDPGGQGLDPKPLVD----------TPS----W----WYDYAARG------DIYSSGPGNND-----RQAAEHMTSIYLAVM------ 22 mycab-i0p9q7 29.9% R--VNDLHAMVTFGNPRRASGREI-----SWQPTLAFEGIGNDEPGGG-------LTAPV----P----WWDYCFPS------DIYGNANPE-----------SFLRFGYDVLTDLQ--- 23 9caud-g1d011 22.2% R--LDDIVAVILYGNPVRAPGIAYGNELGGQSAPGKLNGHVTGGIAGPDCLRPEECVHPV----TGRRIVLDFANAG------DLYAAAPVGAEPWVKETEVGHNETLIYEAVMDFNG-- 24 mycxe-i0rp64 18.8% --LQARVPAALMWGNPLRSPGYANGNAYAGWGMPGLRDGQVTGGISGPDCLTPAQ--TPS----N----WLDFVWLGTDGGATELYTNAPIGTDPWTAETEVGHDETLIYNIIVSQD--- consensus/100% ......h.t..haGsP.tt.th...........s....G.......s..........h...........h.pah..t......-hYst...t...........p....h........... consensus/90% .....phhtslhaGNP.Rt.Gh...........sstt.Gl..t.h.s..........h...........hhpast.u......DhYssh..s..........tp....lhthl....... consensus/80% h..htplhtslhaGNPhRphGh.......t.hsssts.Gl..pthts..........h......h....hh-aAptu......DhYssh..s........p.tc...uIhphlh...... consensus/70% h..hsclhtslhaGNPhRptGhsa.s.h.t.hssssstGIhpctLps..........tPs....h....Wh-YAHtG......DhYuss..s........pht-..sAIhplVh...... 1 9caud-b5a5z7 100.0% MLGLAVNMFKALSNDKGIIAQVMRVLAVPLPGVIDAGRAAVYAGTFAVQ----GTRPHITLAE----TGRV--ARAVWHLNRIGA--KTLARAS 2 9caud-d3jz76 20.4% -------AKGFYGGKDSVVSQLGELAGRPLFEMIAMARAIIDALGFLSKATKGEQWPH-LYNR----------YPAVAFLRQP----------- 3 9caud-g1jv64 20.2% -------VSGFYGGKDSLVAQLGELAGHPLTEGIAVAKAIIDALTFFARSTQGEKWPH-LYNR----------YPAVAFLRQP----------- 4 bpmd2-vg12 27.3% -------ASGFIGGRDSVVAQLIELGQRPITEGIALAGAIIDALTFFARSRMGDKWPH-LYNR----------YPAVEFLRQI----------- 5 bpml5-vg12 28.4% -------ARRFIGGKDSVIAQLIELGQRPIWEGIAMARAIIDALTFFAKSTQGPSWPH-LYNR----------FPAVEFLRRI----------- 6 9caud-h9nci8 21.5% -------ATDFWGGKNSVVAQLAELAQRPLWEGIAVARAIIDAIGFATNMGV-----H-GYNI----------GPAVRFLRELP---------- 7 bpmb2-q857l1 21.3% -------ATDFYRGPNSVVSQLIELGQRPLTEGIAMALAIIDTLRFFTNTA------H-GYNI----------GPAIDFLRS------------ 8 9caud-e0ypf9 30.9% ---------------------------------------------------------------------------------------------- 9 9caud-h6u5f8 21.4% -------WHEVLKGENSILAQIAELLQEPVLHIIPLFQSIVDAGMFFTAG---ADGPH-NYAI----------RPAIDYLRSVV---------- 10 9caud-g3me08 21.8% -------WHDVLKGENSILAQIAELLQKPVLYVIPLFQSIVDAGLFFAAG---LNSPH-AYAI----------GPAIDYLRSV----------- 11 9caud-g8i4e1 21.9% -------AQDLWRFVTDFAVKAGNVMASPETELPAILDAVTQAGMFFIVN---RTAPHLTYDV----------GPAIDYLRQVARD-RRLALAA 12 mycab-h0i9i3 22.8% -------QQTLWSGPISLAKRFAHLLTDPIDGIPAVFESIYDAGMFFGG----GTAPHVNYDP----------QPAIDYLRAA----------- 13 9caud-g1d5a5 26.3% -------LKNLWSGVDSILEQVGEIIKRPIPEIYAAFRAIVYGGQFVTTQPW-ATYPHTNYTI----------DHAVAILRRIAKN-------- 14 9caud-g8ie82 24.8% -------LKNIIVGTDSLIEQVGEMFQRPITEVGAAMWAIFLGGQFVATRPY-PTMPHINYDI----------NPAVAILRRIAA--------- 15 9caud-g1jvt5 21.8% -------GTNILSGPDSLLRQFLEIAEAPVPNAIAAFQAFMDAGLFFVK----GTRPHTNYHI----------GAAVDYLRS------------ 16 9caud-q19zy6 26.4% -------DLDLFTGPDSLLAQVIELVQAPLPETIAITKAILDAGMFFAK----RTGPHVDYNV----------QPAIDYLRT------------ 17 9caud-q856m4 24.6% -------DLNFFTGTDSLLAQAIELSQMPIPRTIAAFKALIDAGMFFAK----GTGPHVDYGI----------GPAIEYLRS------------ 18 9caud-g8ib49 23.0% -------MSRVFSGPDSILRQLLEIGVNPTFELIALIRAVLDAGLFFIR----GTGPHVNYNI----------DPAADFLRSVT---------- 19 9caud-f6m823 30.7% ---------DPLKGAPKLVWQIWELLANPAAEAPALVKAIVLGLKFAGT----RTAAHVEYHIRQATPGTTYLQHAINHLRSIRG--------- 20 9caud-g1fga7 21.8% --------GHFIIGNDSLTQQVIELFTNPFKEAPAVIKAIASGIGFVASNP--PTAPHIEYHLRECVPGVTYFDHAMGYVRQVISANKRIA--- 21 9caud-g8i5a5 22.1% --------GKFILGNDALVSQVIELFTNPFAEVPAVVKAIASGIGFVTSNP--PTAAHIEYHIRECVPGVTYFDHAMGYVRQVISANKRIA--- 22 mycab-i0p9q7 29.9% -----------LHNPWELAGRLAETVSS------------------------------------------------------------------ 23 9caud-g1d011 22.2% ------------RDIMAFAKEIAQILTMPLSQVIPLVQAIINGLTFLAQG---PRAPHWTYSI----------APAVDYLIRCGNELRK----N 24 mycxe-i0rp64 18.8% -------FGGTIEGLVALIEAAVEQFVNPITMVIAMAEAIWNGLQFVAAG---PSADHYAYDI----------TPMINYLTQVVA--PQFA--- consensus/100% .............................................................................................. consensus/90% ...........h.s..thh.phhphh..P...h.shh.uhh.sh.Fh..........H..ht.............hh.hl.t............ consensus/80% .........thhts..ulhtphhclhttPh.th.shhtulh.uh.Fhst.....p.sH..Yth............AhtaLpp............ consensus/70% ........tphhtG.sulltQlhElhtpPl.phhAhhpAIhsuhhFhsp.....phPH.tYsh..........tsAlsaLRp............ |
MView 1.56, Copyright © 1997-2013 Nigel P. Brown
#protein: highlight amino acid physicochemical properties
hydrophobic => bright-green { A, G, I, L, M, P, V }
large hydrophobic => dark-green { F, H, W, Y }
cystein => yellow { C }
negative charge => bright-blue { D, E }
positive charge => bright-red { K, R }
polar => purple { N, Q }
small alcohol => dull-blue { S , T }
any => dark-gray { X }
#protein consensus: report conserved physicochemical classes, derived from the Venn diagrams of Taylor W. R. (1986).
# The classification of amino acid conservation.
#J. Theor. Biol. 119:205-218.
alcohol => o { S, T }
aliphatic => l { I, L, V }
aromatic => a { F, H, W, Y }
charged => c { D, E, H, K, R }
hydrophobic => h { A, C, F, G, H, I, K, L, M, R, T, V, W, Y }
negative => - { D, E }
polar => p { C, D, E, H, K, N, Q, R, S, T }
positive => + { H, K, R }
small => s { A, C, D, G, N, P, S, T, V }
tiny => u { A, G, S }
turnlike => t { A, C, D, E, G, H, K, N, Q, R, S, T }