Reference sequence (1): chlab-q5l6t6 Identities normalised by aligned length. Colored by: consensus/70% and property |
1 chlab-q5l6t6 100.0% MF-SVT-QPSVTGNSLCTMNPKPEILIFSSEAARKAYQRRACCPVIYKLLDVISAIVKFIIRVILFIPLGLLWVLGKICQNVMLPAAGGAFV-----VPLCSPRKLLQE-AFQIQTNGLV 2 chlff-q253e0 69.4% MF-SVT-QSSVTGNSLCTLKPHPEILMFSSKAALQAYERRTRYPVLYKLLDVIHSIIKLIIRIILFIPLGLLWVLGKICQNALLPAAGGAVS-----GRLCFVRKLLQE-AFHARIKHWV 3 chlcv-p94660 67.7% MF-SVP-QSSVIGNSLITMNPQPEILIFSSEAARQAHRRRTLYPVIYKILDVICEIIKCIFRIILFIPFGLLWVLGKICQNCLLPAAGGLFT-----EQLCFAKKILQE-SFRCYVDDWL 4 chlpn-q9js10 50.5% M--SIA-IAREQHAAILDMHPKPSIAMFSSEQARTSWEKRQAHPYLYRLLEIIWGVVKFLLGLIFFIPLGLFWVLQKICQNFILLGAGGWIF-----RPICRDSNLLRQ-AYAARLFSAS 5 chlpn-q9z7z1 50.5% M--SIA-IAREQYAAILDMHPKPSIAMFSSEQARTSWEKRQAHPYLYRLLEIIWGVVKFLLGLIFFIPLGLFWVLQKICQNFILLGAGGWIF-----RPICRDSNLLRQ-AYAARLFSAS 6 chlpn-q9z6x9 43.5% MIPSPT-PINFRDDTILETDPKPSLIMFSSKKTEIASERRKAHPTLFKVLGTIWNIVKFIISIILFLPLALLWVLKKTCQFFILPSS--IIS-----QSMSKTAVAIRRMTFLSHIKQLL 7 chlpn-q9jrv1 28.5% MA-PIH-GSNAFVEDILHSHPSPQATYFSSTRAQKLHEFKDRHPVLTRIASVIIKIFKVLIGLII-LPLGIYWLCQTLCTNSILPSKNLLKI-----FKKQPNTKTLKT-NYLRALQDYS 8 chlpn-q9z6x7 28.5% MA-PIH-GSNAFVEDILHSHPSPQATYFSSTRAQKLHEFKDRHPVLTRIASVIIKIFKVLIGLII-LPLGIYWLCQTLCTNSILPSKNLLKI-----FKKQPNTKTLKT-NYLHALQDYS 9 chlpn-q9k1u7 28.5% M-------------SGIFSNPHP-VSYFSSTHAKQLSDFSKKHPILTKIVTIIVKIFKLLIGLII-PPLGIYWLCQLVCSLALFPRSSMLYSVLKTCFKKYRLEQEIQD-YFVKNLDPSF 10 paruw-q6mev0 23.4% MNGPISFQTRLTGNQAFYDH----SDYITSTKEDFNFPHALSTTYRWNAEHKIIRIIKDVFSLII-FPFTIMHIIAG--KIALLPASS--------------PTLLERSENFAHKVRMAI consensus/100% M.............thh..p......hhoSptt.....ht..hshhhph.thI.tlhK.lhtlIh..Phslhalhth..p..hh.tt................t...pp..a...h.... consensus/90% M..s.....p...tshh..pPpP.h.hFSSptsp...phptthPhlh+lhphIhtlhKhlhtlIh.hPhulhWlhtthCp..lL.uts.hh........h..sp.hlpp.sahttl..h. consensus/80% M..slt..sp..htslhp.pPpPphhhFSSptApp.ach+ptaPhlh+lhplIhtIhKhlltlIl.lPLGlhWlhtplCp.hlLPuushhh........hp.spphlpp.sahttlpth. consensus/70% M..sls..sphhsssllp.cPpPplhhFSSppAcpsa-++ptaPhLa+llslIhpIlKhllulIl.lPLGlhWlltplCpNslLPuuuhhh......h.hp.spphLpp.sahtplpsh. 1 chlab-q5l6t6 100.0% NEGYASSVTRVPIQCDDLFIDAMKITFPEARTD-RWMLVSLGNSECFENRTVL-LYDDDWILNIAKQTQSNVLVFNYPGVMHSKGHISPQSLGKSYQACVHYLRDHPEGPKATQVIAYGY 2 chlff-q253e0 69.4% DEGYASSVNRVPIQSDDLFIDTLSITFPKARKD-RWMLVSLGNSECFENRAIL-RHGDDWILNVARQSDSNVLVFNYPGVMHSKGPISRESLRKAYQACVRYLRDCPKGPQAKQIIAYGY 3 chlcv-p94660 67.7% ESGYASSVKRIPIQCDDLLIDAISIQFPDAEKD-RWMLVSLGNSECFETRAMV-YSRNDWILNVAKQARANVVVFNYPGVMHSKGPITRESLGKAYQACVHYLRDHPDGPKAKQIIAYGY 4 chlpn-q9js10 50.5% FQDHVSSVRRVCLQYDEVFIDGLELRLPNAKPD-RWMLISNGNSDCLEYRTVL-QGEKDWIFRIAEESQSNILIFNYPGVMKSQGNITRNNVVKSYQACVRYLRDEPAGPQARQIVAYGY 5 chlpn-q9z7z1 50.5% FQDHVSSVRRVCLQYDEVFIDGLELRLPNAKPD-RWMLISNGNSDCLEYRTVL-QGEKDWIFRIAEESQSNILIFNYPGVMKSQGNITRNNVVKSYQACVRYLRDEPAGPQARQIVAYGY 6 chlpn-q9z6x9 43.5% SLKEISAADRVVIQYDDLVVDSLAIKIPHALPH-RWILYSQGNSGLMENLF---DRGDSSLHQLAKATGSNLLVFNYPGIMSSKGEAKRENLVKSYQACVRYLRDEETGPKANQIIAFGY 7 chlpn-q9jrv1 28.5% SKNRVASMRRVPILQDNVLIDTLEICLSQAPTN-RWMLISLGSDCSLEEIAC--KEIFDSWQRFAKLIGANILVYNYPGVMSSTGSSSLKDLASAHNICTRYLKDKEQGPGAKEIITYGY 8 chlpn-q9z6x7 28.5% SKNRVASMRRVPILQDNVLIDTLEICLSQAPTN-RWMLISLGSDCSLEEIAC--KEIFDSWQRFAKLIGANILVYNYPGVMSSTGSSSLKDLASAHNICTRYLKDKEQGPGAKEIITYGY 9 chlpn-q9k1u7 28.5% KDPAVSESKRITIQQDHLTIDTLAIHFSTARPK-RWLLISLGSGDFLEDMIGLKDSLFLSWKELAKLLGANILIYNYPGVKSSTGKLNLENLATAHNLCAKYLQDKIQGPGANEIITYGY 10 paruw-q6mev0 23.4% DLQSSWKYKRLTIKVDGYKIDAMIMGQKETLHNGRWVLVSNGNAEFYETKLL-----DGQFKKLLFQINGNAIFFNYPGVGASSNLPNKNAMTKAYQALLRFLEDQEKGIAAKEIIGYGH consensus/100% ......t.pRlsl..DthhlDsh.ht..ps..p.RWhLhS.Gsst.hE.hh.........h.phh...tuNhlhaNYPGlhtSps..p.pshhpuaphhh+aLpDp.tG.tAppllsaGa consensus/90% ..t.suphpRlsl..DplhIDshtlphspA..p.RWhLlS.Gssp.hE.hhh......s.h.phAc..tuNlllaNYPGVhpSpG..shpslspuaphCs+YLcDp.tGPtAppIlsYGY consensus/80% ppshsuuhcRlsIp.DplhIDsltlphspA..s.RWhLlS.GsuphhEphhh...t..s.hhplAc..tuNlLlaNYPGVMpSpG..shpslspuaphCs+YL+Dc.pGPtAppIIsYGY consensus/70% ppstsSSs+RVsIQ.DclhIDsLpIphspAhsc.RWMLlS.GNu-shEphsh..pt.pD.hhplA+thtuNlLlFNYPGVMpSpGphohpsLsKuYQAClRYL+Dc.pGPtA+pIIuYGY 1 chlab-q5l6t6 100.0% SLGTLVQAQALSNEVTDGRDGVRWFVVKDRGPKSVSSIALQWLGQLGVWTIKLLNWEINSAKLSESLVCPELFIHGVDC--------ESKLIGDGLFTRDNCFAAPFLDP-HAPVLPGRK 2 chlff-q253e0 69.4% SLGTLVQALGLNEEITDGSDGVRWFVIKDRGPKAVSAVASQWLGKIGELTIKLLGWEINSEKLSRSLTCPELFIHGVDG--------HSRLIGDGLFSKNNCFAAPFLSS-NTSNLPGKK 3 chlcv-p94660 67.7% SLGTLVQALGLSKEVVDGSDGVDWFVIKDRGPRSVAAIASQWLGKVAGWTATQLGWEINSAKYSESLVCPELFIHGEDY--------QAQLIGDGMFNRDNCFAAPFLDP-NAPKFPGKK 4 chlpn-q9js10 50.5% SLGASVQAEALSKEIADGSDSVRWFVVKDRGARSTGAVAKQFIGSLGVWLANLTHWNINSEKRSKDLHCPELFIYGKDS--------QGNLIGDGLFKKETCFAAPFLDPKNLEECSGKK 5 chlpn-q9z7z1 50.5% SLGASVQAEALSKEIADGSDSVRWFVVKDRGARSTGAVAKQFIGSLGVWLANLTHWNINSEKRSKDLHCPELFIYGKDS--------QGNLIGDGLFKKETCFAAPFLDPKNLEECSGKK 6 chlpn-q9z6x9 43.5% SLGTSVQAAALDREVTDGSDGTSWIVVKDRGPRSLADVANQICKPIASAIIKLVGWNIDSVKPSERLRCPEIFIYNSNH--------DQELISDGLFERENCVATPFLEL-PEVKTSGTK 7 chlpn-q9jrv1 28.5% SLGGLIQAEALRDQKIVANDDTTWIAVKDRCPLFISPEGFHSCRRIGKLVARLFGWGTKAVERSQDLPCLEIFLYPTDSLR------RSTVRQNKLLAPELTLAHAIKNS---PYVQNKE 8 chlpn-q9z6x7 28.5% SLGGLIQAEALRDQKIVANDDTTWIAVKDRCPLFISPEGFHSCRRIGKLVARLFGWGTKAVERSQDLPCLEIFLYPTDSLR------RSTVRQNKLLAPELTLAHAIKNS---PYVQNKE 9 chlpn-q9k1u7 28.5% SLGGVVQSAALQKNPFT-NSETSWVAVKDRAPHSLPAAANSFFGPIGKLIAVLARWKMDAEKNSRELPCPEILVYSADRFR------PSEVGDDTALLPEFTLAHAIKRT---PFARSKK 10 paruw-q6mev0 23.4% SIGAGVQAEALKGHAL--KSGIKYVWVKSRTFSDLATTAGLITNKALGLLVKVIGWNIDCVESSKTLQAPEIILQTASVANYQELTNSSKIIYDGIIPENATLAKVLLDQ-GCSISKKRI consensus/100% SlGs.lQu.uLptp.h..psthpahhlKsRs...hss.u...ht.hh.hhh..htWthps.c.SppL.s.Elhl.s.s..........tplh.sthh..p.shAtshhp........tp. consensus/90% SLGs.lQA.uLppphhs.pssspWhslKDRssh.hus.u.p.ht.lu.hhhplhtWthpu.c.SppL.C.Elhlas.s.........puplhtsthh..p.shAtshhp......h.s+c consensus/80% SLGs.VQAtALpcphhsusDsspWhsVKDRsspslushA.phhtpluhhhhpLhtWphsu.c.ScsL.CPElFlastDt........puplhtDslht.-.shAtshhss...s.h.s+c consensus/70% SLGshVQAtALpcchhsusDuspWhsVKDRuP+ulushAtphhsplGthlspLhsWpIsu.KhScsL.CPElFlassDs........puplIsDGLhtc-sshAtshLcs...shspuKK 1 chlab-q5l6t6 100.0% IPVGEYLLDHQ-GPLDRNTIQQIVEHIKVHFDSEDSTNRNNS---- 2 chlff-q253e0 69.4% IPVGEQNLVHQ-GILQEETVQEIVAHILDHFETGDSNGTSVNGEQL 3 chlcv-p94660 67.7% IPVGEFLLQHK-GELDETTIQNVVKHIIDHYSPEDPSETPDDGE-- 4 chlpn-q9js10 50.5% IPVAQTGLRHD-HILSDDVIKEVAGHIRRHFDN------------- 5 chlpn-q9z7z1 50.5% IPVAQTGLRHD-HILSDDVIKEVAGHIQRHFDN------------- 6 chlpn-q9z6x9 43.5% IPIPERDLLHL-NPLSPNVVDRLAAVISNYLDSENRKSQQPD---- 7 chlpn-q9jrv1 28.5% F-I-EVRLSSDIDPIDSKTRVALATPILKKLS-------------- 8 chlpn-q9z6x7 28.5% F-I-EVRLSSDIDPIDSKTRVALATPILKKLS-------------- 9 chlpn-q9k1u7 28.5% F-IGEVNLLHS-SPLKHPTIQKLAEAILESLSRKN----------- 10 paruw-q6mev0 23.4% IGVPE---SHN-EELTE--LQYLANSINQMLA-------------- consensus/100% h.l.p....p..t.lp...h..lst.I...ht.............. consensus/90% h.l.p..L.pp.t.lpp.sh.tlst.I.phhs.............. consensus/80% h.lsEh.L.Hp.t.Lsppslptlst.I.pphs.............. consensus/70% IslsEhtLpHp.s.LscpslpplAstIhc+hs.............. |
MView 1.56, Copyright © 1997-2013 Nigel P. Brown
#protein: highlight amino acid physicochemical properties
hydrophobic => bright-green { A, G, I, L, M, P, V }
large hydrophobic => dark-green { F, H, W, Y }
cystein => yellow { C }
negative charge => bright-blue { D, E }
positive charge => bright-red { K, R }
polar => purple { N, Q }
small alcohol => dull-blue { S , T }
any => dark-gray { X }
#protein consensus: report conserved physicochemical classes, derived from the Venn diagrams of Taylor W. R. (1986).
# The classification of amino acid conservation.
#J. Theor. Biol. 119:205-218.
alcohol => o { S, T }
aliphatic => l { I, L, V }
aromatic => a { F, H, W, Y }
charged => c { D, E, H, K, R }
hydrophobic => h { A, C, F, G, H, I, K, L, M, R, T, V, W, Y }
negative => - { D, E }
polar => p { C, D, E, H, K, N, Q, R, S, T }
positive => + { H, K, R }
small => s { A, C, D, G, N, P, S, T, V }
tiny => u { A, G, S }
turnlike => t { A, C, D, E, G, H, K, N, Q, R, S, T }