Reference sequence (1): 9bacl-c6j2l7 Identities normalised by aligned length. Colored by: consensus/70% and property |
1 9bacl-c6j2l7 100.0% M--------------------------------SIQHEIVVDAHPNIYTGH-------GRKLSIYFSEPSEGVNENTGLILFIPGYGGHARSNVY-QKMRRQFADQYNLICIQCDYFGYE 2 geos0-e3iaz2 39.3% M--------------------------------AKNHELTIPAHYNIYTGN-----NTGRQLTIYFSEPDAGVNEETGLLLLIPGFGGNSQSNVY-KKMREQFADQYNLVTIQCDYFGSE 3 paep6-e0rmu8 33.8% M--------------------------------SEQHSINISAHYNIYTGN------SNRELRIDFSTPQNGVTESTGLIIFVSGFGGNIDSNVY-AKMRKVFADKYNMVTIQCSYFGST 4 clobb-b2tjt7 38.1% M--------------------------------AINNETKVLSQNSIYNKN-RNITENNRELKVYYSIPENGVNEETGLLLFIAGFGGQATSNVY-KKMRNDFSDKYNLVTVQCDYFGYE 5 cloc7-d9su27 32.6% M--------------------------------SKDYEIQVKGHKSIYAKEAESDTNASRKIKIYFSTPSYEMNDDTGVLLLISGFGASTNSKVY-KKMRKEFADKYNLVTIQCDYFGNE 6 clold-d8gqb1 34.7% M--------------------------------AKDYDFYVNAQSSIYKSV-------DRKLKVYFSEPDSGINNNTGILLLIPGFGANSNSNIY-RKMRRDFSDKYNLVVLSCDYFGYE 7 synww-q0b0d0 15.7% M--------------------------------RETVNLTLEAHPDIELGR------ERRPLEAFLTFPEAGINEDTGIFLLIDGLGGRANSQYQSDELRPFVADTFNCVAVGVNYFGIA 8 aerhh-a0keu7 13.7% MLPGSGSGARIIRTPTDMVEAMPMAWPFNKVGNMSYYEHEVVGHPDVELGL-------CGERQVRYRI-HGAEQAGSGLVVYIPGFGGDLGAYSQ--VFCEKVAAQHGMAALCVDYFCMR 9 thicr-q31fm2 16.3% M--------------------------------SMLEKVSFSTTPDFELGF------EHCPRQTDYLI-AQPKERAKGLVVYIPGFGDDAGEYRE--KFCLKVAEKYDLAAMTVDYHCFY 10 camco-e0qbj3 12.0% M--------------------------------LINQTFEIDSCDDVELNI-------KRTSKLEYRISYDDEKDIKAIVFIVGGFGANANISFL-DFDREYIAKNFDVVVIHVFYHCFC 11 camjr-q5ht95 13.2% M--------------------------------LINQTFEIDSCDDVELNI-------KRTSKLEYRISYDDEKEIKAIVFIVGGFGANANISFL-DFDREYIAKNFDVVVVHVFYHCFC 12 camju-a3yll6 13.3% M--------------------------------LINQSFEIDSCDDVELNI-------KRTSKLEYRISYDDEKEIKAIVFIIGGYGANANIYFL-DSYRNYIAKNFDVVAVHVFYHCFC 13 camco-q4hhu5 15.3% M--------------------------------IINQIYSIDSCDDVELNI-------KRGSKLEFRLTYDDSKEIEAIVCIIPGGAEDMNNYIY---VDDYLARNYNVAVININYHCIG 14 camjr-q5ht69 14.3% M--------------------------------IVSKAYEIDSCDDVELGI-------KRESKLEFKLWYDDEKTPEALVFVVQGMGDDISSIQY---VGDYMVRQFNTAVVGVNYHCIG consensus/100% M.....................................h.h.sp.sh..t........tt..ph.h.......pt.pulhhhl.Ghutp.t........t..hstpashhshth.Yas.. consensus/90% M....................................th.l.up.sl.ht........tp..ph.ap...ts.pp.pullhhlsGhGsp.t........p..hucpashsslts.Yas.t consensus/80% M..................................p.phpl.up.sl.hs........pRt.pl.ap...ts.pp.pullhhlsGhGsphs..h....hpp.hucpashsslps.Yas.t consensus/70% M................................hhspphplsupssl.hsh.......pRp.cl.aphs.ss.p-.pullhhIsGaGussss.hh.thhRc.hAcpasllslpssYashp 1 9bacl-c6j2l7 100.0% HMQ------------------------------------------------------------------------LEDTLESLDNFNDMSLMQVLDNLTAVLMVKEILKENGIPFN---- 2 geos0-e3iaz2 39.3% FMQNTKK------AKLNIDISEFKNIISNEDY------------WKLKEEN-ITWEQFIQIFSK----YPIKIPMLEILDENNENFNDMGFMQALDLLAALYAVKIILKDNNLSFN---- 3 paep6-e0rmu8 33.8% FMQSSAD------RFWLKNPEILQSILTVDEL------------EKMNKDSSILLSILSE--------KNILLPVIANIDESIEEFNDMSYMQAIDIISSVEAVKTILKGNNLIFN---- 4 clobb-b2tjt7 38.1% FMQSEPEI-----VTPKIDKEQLKTAFSIKEV------------EEIYKDGDLNFKKFLEFASKKR--QKIIAEVKAITLEDEDNFNDMGILQAIDNVTAVLNVLNILQDKKHSFN---- 5 cloc7-d9su27 32.6% FMQTEFLSGNY--SLQQIDLNKMKNSLSEEDY------------SRMFDEGALVLTQLLDVNFT----QENTIVLKKIQNESIHNFNDMGIMQAIDNITAVLTVLAIIYNNNVKIN---- 6 clold-d8gqb1 34.7% FMQNMPFFIEK--NILEISVNN----------------------EFVNYNSSLINNLMDELMKSPK--ESLTLSGRLKIHEKPEYCCDMGLMQAIDNITAVLSVISIIYDNDLKFN---- 7 synww-q0b0d0 15.7% RN-----------EVLNITPEFLYNFNRIYGLN--LSL----ESFKLVQGEDDIYRVIAEAVIGRGI-TSVDVRCQPTLETGRGEYQSWGFLPAIDCLQVVGEVL-----KTYPLN---- 8 aerhh-a0keu7 13.7% SRPAVGAAI----SLLPEER---ERALALLGLP-------------AKTPDTALLRALDGVQ------PAAPLRFQGVLVPPDGAYQNFGVMAALDILNAIEDAM-----LRYGGN---- 9 thicr-q31fm2 16.3% SRPEVHSAT----AYEAEDVALIEKLFLAHNLP----F----AGDTIEEGIEILNKHLAS--------HNQKASITATLIPGKDEYQNAGVLQALDIINAVGHAI-----EKYSIP---- 10 camco-e0qbj3 12.0% ARQSIDQKYNPKLIPNQDDLERINGILKNINLG-HLSV----NKDNFESIIPLIEQKVNKMKQAGLVDESQKIELSCDFIPPNGDYQNYGVMAAIDHINVLKDLV-----KKFPNF---K 11 camjr-q5ht95 13.2% ARQSIDQKYNPKLIPNQDDLERVNGILKNINLG-HLSV----NKDNFEQIIPLIEQKVNEMKQAGLVDESQKIELSCDFIPPNGDYQNYGVMAAIDHINALKDLV-----KRFPEF---A 12 camju-a3yll6 13.3% QRRSDVEKYSTLADFTKDDLKLIEKVLRKYNIP-CDQL----ANNTVVSHCEYLSEIMTELKMLNRLPYDFEERLSATFIPSRGEYQNFGIMAAIDHINALKDLV-----KRFPKF---A 13 camco-q4hhu5 15.3% NRPHLGSSF----YLDDIDKIILDTSLKTINLN-HINVFDINSYENLNNAFIRIDQEIQKLKLNQKLNQNYKLRTHVSFLPSKNEYQNFGIMQAMDILNAIFYIK-----ENSPFKLMGG 14 camjr-q5ht69 14.3% NRPQTGSTF----YLDDIDKLILKASCEAADIKLPYDVDKIQDYKQMSEIFHFVNNQMVEGKQKGNFTPNYFLNLHVSLQPAKNEYQNFGIMQAQDLLNVALYLK-----KHAPFDTMGG consensus/100% ...................................................................................t.hpshuhh.s.D.ltsh..hh......t........ consensus/90% .h................p...........................h........p.h.t..............h...h..s.ttapshuhhtAhD.lssl..hh.....pph....... consensus/80% .h.t..............s.....t.....th..............h.p...hh.p.h.p.........t..h.h...h..s.tpapshGhhtAlD.lsslh.lh.....pph.h..... consensus/70% .h.p..t.......h.p.-ht.hpt.hp..sl............pph.p...hl.p.h.ch........s.hlphpssh..spspapshGlMtAlDhlsAlhtlh.....pphshs.... 1 9bacl-c6j2l7 100.0% GRKIICSGQSHGAYLAYLCNRFAPHLFSMIIDNSAYLRP-----VYL------DYIRNVP-----------------------SHNLQKRYYVCDLNLDRDVMDLVF--LYRKFENKSNI 2 geos0-e3iaz2 39.3% QNKVIAYGHSHGAYLGYLCNRLAPNDFTLLIDNSGWIKP-----AYL------YANRYIFNIIGKM-----------------TLQTEFSYLAKKLNYDKDILYLPY--LYKDFHNNSQI 3 paep6-e0rmu8 33.8% PARIIGYGHSHGAYLLHLSNRLAPNLFSYLVDNSAWIEP-----AFL------SNNRFLYGKVGNA-----------------TFAIEFDYIAKKIIPNRLDLNLET--LYKDFHGNTQV 4 clobb-b2tjt7 38.1% SKKIIIYGHSHGAYLSYLCNRYCPNLFSLIIDNSAWLEP-----VYL------NGNRYLNTYLGNL-----------------TLTTVFDYLAKNLIKDKEALNLNI--LYSNFKNECLI 5 cloc7-d9su27 32.6% TKKIIAMGQSHGSYLGYLSNRLCPNLFHYILDNSAWVYP-----SYI------DGGRSLVRKNGNL-----------------TIVTNYEYFAKKNNISFKFLDLKR--MYQNFNNQCKI 6 clold-d8gqb1 34.7% TKKILIYGNSHGSYLSYLCNAFAPELFSLIIDTAAYTYP-----KYI------KKRQPWFIKYNNS-IFRTNDRCIEKSI---KIQFDINYIISKLFYDLDILKLDV--LYNQFNNKCKI 7 synww-q0b0d0 15.7% PGRIMAYGSGYGGYIALLLGKFAPHTFSVIMERGAYCRS---ELKHI-ACGEVMEEDYIYSFAIRFSDLRFTIAAGSKNPWTIEDELSLAYFSDSHRRIRSLLAEGP-----RMVSPTRY 8 aerhh-a0keu7 13.7% RDNLILVGSSYGGYLAQLVNKFRPGYARALFDNSSWAEP---NLAYV-VGQDIGAVEYQCSL-----QGGVELALCVDSPWR-MVVGHPHEFDVDAFIIRAFSASQLDQMAAQGGTQTFC 9 thicr-q31fm2 16.3% AENVILIGSSYGGYIANLATKFAPKTFRAVFDNSSWAQP---HFTYI-VGREYGYPELIHKT-----HSHIATKLFLRTAWT-LKKGLPNTFDGKRFYVRTFSEDQLG-QFSSYEPETYY 10 camco-e0qbj3 12.0% NLPKIYGGGSYGGYLSLLIAKIAPWYVDGVVDNSGVCLP---FLVCI-LGREMNQGEFYFE------GSGYRLYCFVYKYWN-RNMNSSYYFGDENYLIRAILNSNHLKIQANIDSDIVF 11 camjr-q5ht95 13.2% DLPKIYGGGSYGGYLSLLIAKIAPWYVDGVIDNSGPALP---PLQFI-LGREIDSPEFVFN------SKDLNLYCFLKTHWT-RKENSSYFFNDANYIIRVLLNLKHLQILSDISKNIIF 12 camju-a3yll6 13.3% DLPKIYGGGSYGGYLALLIAKIAPWYVDGVIDNSGSAVP---PLNYI-IGRELEFKSKDTNGDMYMQGDHFFVSCFLKTHWT-RKENSPYFFNNENYFIRTLLNKDHLILQSQKNKNIIY 13 camco-q4hhu5 15.3% GIRTILFGNSYGGYLANLCAKIAPWSIDFILDNSSFVNLFGNIFRLIGFGKEIDFTRYHGTYDDTL-FKNIFLYLSDKTYWN-NNKFSKKYFSNARKIIREPLNKEHL-IIQSLYPNPKY 14 camjr-q5ht69 14.3% GIPVIMIGSSHGGYLAHLAAKIAPWLVDGVLDNSAYAKF---LWRVVGFGKEIDFMQYSEFATFDF-FHHIKTHCSTKTFWT-SNSSSPRFFSPARRKIRNLLEEDHL-LEQSKCLKTCF consensus/100% ...hhh.GtuaGuYl..L.sthtP..hphlh-puu.h........hl.........p..................................h..t....h............ph.....h consensus/90% ...hlhhGtSaGuYlu.L.s+hsP..hphlhDsuu.h........hl.........p.................................hhs.t..h.h...t..h....tph..p..h consensus/80% s..hIhhGtSaGuYLu.Lhs+hsP.hhphlhDNSuhh.s......hl......t..p..........................p...p..ahstt..h.+thht.th..h.tpht.p..h consensus/70% shplIhhGpSaGuYLuhLss+hAP.hhshllDNSuas.P.....tal......sh.chhhph.....................phphp.paassphhh.RshLs.ph..lhpphpspshh 1 9bacl-c6j2l7 100.0% VSFHGVYDQLIGIIEKINFCNSIPN----CRLNVV-ND----TTLYKGAFKTAHHGMDADFIKFF---------DLVMGNY---KSESEHP--------FQLPN-VRVTTKQNVYTFDYS 2 geos0-e3iaz2 39.3% WSFHGKDDSLVPYKEKEKFCNEVGV----TKFFII-DE----SKVDNKRFYSTDHGLNADFLELF---------KFVMENV---KWTKKDP--------YCLNRKTVFRSSTIEYTVDFD 3 paep6-e0rmu8 33.8% LSFQGDNDDLVNHLEKKRIVETINN----SDFILV-KQ----EDVDHVKYKSNSHGLDADFLELF---------SFALELE---RPTKETPV-------KELIYIIDFES--VLIEVDYT 4 clobb-b2tjt7 38.1% ITYQGVTDNLIDHKEKEKFCKNIDN----CIYNEI-SK----EKIDDIVFKSTNHGLNSDFIKMF---------DYTMSNFNI-KFEKETI--------MNLPKEVIFKTSDHKYVIHYK 5 cloc7-d9su27 32.6% VCYHGAEDPLITLENKQSAVKDIEN----LVFNKI-TP----EKVDGKVFTNCVHGLGADFLNLF---------DTFYKSYVEPEKSKGDT--------LEFDNYVEFQQ----LSIDYT 6 clold-d8gqb1 34.7% ISFHGTNDDLTPISEKRKFCGSIDN----CKLNEI-IEIGA-SKSDSSIFQNDHHDIGVNFISLF---------DKIMNEY---NSTFKIS--EY----LDLKNEYIYSTMKNEYKISYK 7 synww-q0b0d0 15.7% YILHAEDDDIVPVADKDLLVERLRDYAP-VYYQRVPGSGGEREVLDDSVVKE-ENGKENGAKELFPLLDLNKASDRDLLQCLS-QVEQDESIPEKRDTDFTLNSRYVFDCGEKHYEFSFA 8 aerhh-a0keu7 13.7% LMVHAIHDAIAPADAKLAMARAMLARGFNAELILF-DE----SSVDGEFIRNMEHGMGLSMLQFF---------AQGLALLAE-RSPAFTA---------TRAAEVTLHAGHSVYQLNFA 9 thicr-q31fm2 16.3% YFIHAEKDKLALTEHKIQMATYMIQREMNVHMEVM-EA----ADIDGQYIKTIEHGMNLSMLTFF---------DKAYAHIND-HTISLEND-------FMNGSLVGYDSGDHRYEFDFS 10 camco-e0qbj3 12.0% SSYHSLQDTRASAQNKIELYKCYQELGYDATLHLIKDE----NDVDGRFIKSLEHGLRMTDKALF---------RKELPLMLE-KLQGRKS--------FMRENSISYPCGNKVFAFKDV 11 camjr-q5ht95 13.2% VTYHSVKDFQAPVKDKIIFYDIFNTLGFDATLNLIKYE----SQVDGRFIKDLNHGMRISDKALF---------RKELPLMLE-KLQKRKS--------LMQENSISYPCGNKAFTFKDV 12 camju-a3yll6 13.3% VSYHSKEDPLTPANFKELTMQILKILGYDVSLNLI-DE----NKIDGKFIKNLDHGCGIPDKALF---------RKELPLMLE-KLQKRKS--------FMQENSISYPCGNKVFTFKDV 13 camco-q4hhu5 15.3% ILYHSIFDERSPFENKENFVHILKELNFKVEFFAV-------SQVDNKFIKNLNHGMGLSTKLFF---------KKHLLQILK-EPLQDK----------ICKKEVSYKCDELVYTFKEE 14 camjr-q5ht69 14.3% ISYHSLYDEYVSLKEKTMLYKELEKLGFDATLHSITKE----SQVDGKFIKNLNHGMGIPVKLLI---------KKELPLMLE-KIKQNPKK-------DCKEKYISYPCEDLLYKFSEK consensus/100% ..hpu..D....h..K..hht.h........h..h.......t...t.hh.p..psht.s.h.hh.........t..h......p....................h.h.t....h.hp.. consensus/90% h.hpu..D.hhsh.tK..hhp.h......s.h..h.......pplDt.hhps.pHGht.s.h.hF.........ph.h..h...p..t...............t.h.h.s....hthp.. consensus/80% h.hHu..D.hhshtpK..hhp.h.t....s.h..l..t....pplDsthhps.pHGhths.hthF.........ch.h..h...c..ttp.............p.h.a.s.p..aphp.. consensus/70% lsaHuhpDplsshppK.thsptlpp....sphphl.pp....splDsphhKshpHGhshshhthF.........cpth..h...+.ppcps........h.htp.lsapstphhaphc.s 1 9bacl-c6j2l7 100.0% SGL-VRLMVE----- 2 geos0-e3iaz2 39.3% YGL-PIMSLKPLYN- 3 paep6-e0rmu8 33.8% NGL-PIFNFNFK--- 4 clobb-b2tjt7 38.1% NGN-LTMKIL----- 5 cloc7-d9su27 32.6% SGL-PVVELRNS--- 6 clold-d8gqb1 34.7% DIF-PRLIINSI--- 7 synww-q0b0d0 15.7% DSYGLQVTLRDKPGI 8 aerhh-a0keu7 13.7% NPE-VRLQRQRIEA- 9 thicr-q31fm2 16.3% TFP-VTGRVTQKAVA 10 camco-e0qbj3 12.0% GDK-FKLEIKD---- 11 camjr-q5ht95 13.2% GDK-FVLKLN----- 12 camju-a3yll6 13.3% ENQ-LKLIIN----- 13 camco-q4hhu5 15.3% NHQ-IILNITN---- 14 camjr-q5ht69 14.3% DDK-ISLKIDKF--- consensus/100% ......h.h...... consensus/90% t.....h.hp..... consensus/80% s....hh.lp..... consensus/70% ss..hhlplp..... |
MView 1.56, Copyright © 1997-2013 Nigel P. Brown
#protein: highlight amino acid physicochemical properties
hydrophobic => bright-green { A, G, I, L, M, P, V }
large hydrophobic => dark-green { F, H, W, Y }
cystein => yellow { C }
negative charge => bright-blue { D, E }
positive charge => bright-red { K, R }
polar => purple { N, Q }
small alcohol => dull-blue { S , T }
any => dark-gray { X }
#protein consensus: report conserved physicochemical classes, derived from the Venn diagrams of Taylor W. R. (1986).
# The classification of amino acid conservation.
#J. Theor. Biol. 119:205-218.
alcohol => o { S, T }
aliphatic => l { I, L, V }
aromatic => a { F, H, W, Y }
charged => c { D, E, H, K, R }
hydrophobic => h { A, C, F, G, H, I, K, L, M, R, T, V, W, Y }
negative => - { D, E }
polar => p { C, D, E, H, K, N, Q, R, S, T }
positive => + { H, K, R }
small => s { A, C, D, G, N, P, S, T, V }
tiny => u { A, G, S }
turnlike => t { A, C, D, E, G, H, K, N, Q, R, S, T }