Reference sequence (1): 9arch-a0a5b2yw09 Identities normalised by aligned length. Colored by: consensus/70% and property |
1 9arch-a0a5b2yw09 100.0% ---------------------MSLVFNHHNSEDSKMEFIEILGYNLRYLQFSGIRSTKTIVLLHGLGASAERWSELWPLM-KKYNVIIPDLIGFGYSEKPLVEYTVDFFIKSLEQFFEKL 2 9arch-a0a484ii63 76.7% ---------------------MGLVFNQQNSDTERMEFIQILGYNIRCLIIERKGPCKTIVLLHGLGASIERWSELWPLL-KDYNVIIPDLIGFGYSDKPLIEYTIDLFVKFLEELFSKL 3 9arch-a0a557st69 72.7% ---------------------MGLVVNQHKNSNPSMDFIEILGYKIRYVMFDCPEAKKTIVLLHGLGASAERWADLWPLL-KKYNVIIPDLVGFGYSEKPLIEYTIDFFVRFLEEFFEKM 4 9arch-a0a838d7k0 73.9% -----------------------------------MDFIEILGYKIRYVKFDRPESKKTLVLLHGLGASAERWAELWPLL-KNYNVIIPDLVGFGYSEKPLIEYTIDFFVSFLEEFFEKM 5 9arch-a0a654lzk8 75.3% ---------------------MSLVFNQHKKSNQTMDFIKILGYNIRYIKFDRPESKKTIVLLHGLGASAERWSELWPLL-TKYNVVIPDLIGFGYSEKPLIEYTVEFFIRSLEEFFKEM 6 9arch-a0a838naf7 60.9% --------------------------------------------------------------LHGIGASAERWSELLPHIDSHHNIIIPDIIGFGYSEKPLIEYSINLFMKFLDEFFKKL 7 9arch-a0a838w2h7 59.4% ---------------------MSLISDEET--TEEMSFTKILNYNIRYIKISKVNSSGTIVLLHGLGASAERWAELLPHMDINYDIVIPDIIGFGYSEKPLIEYSIDLFMKFLDEFFKKL 8 unccr-Q8NKN6 55.1% MDIDHKILVYFILSINKIIITMGLVSDRQR--NETMDFIKILGYNIRYIKIDQVKSNETIILLHGIGASAERWSELVPFL-YNCNIIIPDIIGFGYSEKPRIEYNIDLFVKFLDELFLKL 9 9arch-b3t6z1 40.9% ---------------------M------------TVKTTEIDGNKIRY--FEKGTSKDTLLLLHGLGASAERWEYVIPLFAKKFKVIVPDLIGFGYSDKPMVDYTTDYFAEFVSKFVNKV 10 censy-a0rx82 36.5% ---------------------M------------AERFATVGGSRIRY--LDSGGAGEILLLLHGLGASAERWEFASPALEEKYRVVAPDLPGFGQSDKPFADYTPGFFAGAVEGLLGEI consensus/100% ..............................................................LHGlGAShERWt.h.Phh..phpllhPDl.GFG.S-KPhh-Ys.thFht.lpthh.ch consensus/90% ....................................phhpl.s.plRh..hpt.tstthllLLHGlGASAERWt.lhPhh..paplllPDllGFGYS-KPhl-YohshFhp.l-phhtch consensus/80% .....................M............thcFhpIhG.pIRY..hpp.tupcTllLLHGLGASAERWu-LhPhh.ppasllIPDllGFGYS-KPhlEYol-hFhchL-chFpKh consensus/70% .....................M............pMcFhcILGYpIRYl.h-pspupcTllLLHGLGASAERWuELhPhl.pcYNVIIPDLIGFGYSEKPLIEYTlDhFh+FL-EFFpKl 1 9arch-a0a5b2yw09 100.0% NIRNPIIVGSSFGGQLVIEYSLKHKDFFDRIILVSPAGTLERPTFVLSQYIFSGLYPTVENVESAFKRMANNENYKVDPYTVKDFINRMKLPNAKYALISTLLAMRRDQSLQKRLVEISI 2 9arch-a0a484ii63 76.7% EISNPIIIGSSFGGQLVLEYSLRHKDFFEKIILVSPAGTLERPTYVLSQYIFSGLYPTIENVQRAFQMMANNPDYKVDENTVKDYINRMRLPNSKYALISTLLAMRRDQRLQNRLVEIVI 3 9arch-a0a557st69 72.7% QIRNPIVIGSSFGGQLALEYSLLHNDFFEKIILVSPAGTLEKPTYGLSQYIFSGLYPTFENIRSSFQMMANNDEYVVDEITVKDYMNRMRLPNAKYSLISTLLAMRKDQTLRKRLVEISR 4 9arch-a0a838d7k0 73.9% QIRNPVVIGSSFGGQLALEFSLTHRDFFEKIILVSPAGTLEKPTYGLSQYIFSGLYPTFENIHRSFQMMANNEEYVVDEITVKDYMNRMRLPNAKYSLISTLLAMRKDQTLRKRLVEISR 5 9arch-a0a654lzk8 75.3% QIHKPIIIGSSFGGQLALEYSLTHKDFFEKIILVSPAGTLEKPTYVLSQYIFSGLYPTTENVHRAFEMMANNKEYVVDLATVKDYVNRMRLPNAKYSLISTLLAMRKDQSLRKRLAEIDI 6 9arch-a0a838naf7 60.9% EIKNPIIIGSSFGGQLVMEYCLRNPGYFKKIILVSPAGTQVRSTFVLSQYIFSALYPTIDNAKRAFQMMSNNNQHQIKDSIIKDFVNRMRLPNAKYAYISTLLALRRNNELKDKLGEIKV 7 9arch-a0a838w2h7 59.4% EIKNPIIIGSSFGGQLVIEYSLRNPDYFKKIILISPAGTQIKSTFVLSQYIFSALYPTLDNAKRAFQMMSNNNHHQINDSLIKDFVNRMRLPNAKYAYISTLLALRKNNDLKNKLREINT 8 unccr-Q8NKN6 55.1% EIKNPIIMGSSFGGQLILEYYFRHKDFFKKMILVSPAGTQERPTLALRQYTYSCLYPTRENTERAFKMMSHFN-HTVKDSMIKDFINRMKQPNAKHSFVSTLLALRKNSDLQDNLREIKI 9 9arch-b3t6z1 40.9% GIKELNVIGSSLGGQIAAESIINHDVNVKKLVLVSPSGVMKHSTPALDVYISAALYPNTDSALNAFQAMSGRK--KIDEKIVSGFVERMQLPNAKMAFMSTLLGLSNSQIITEKLQLITI 10 censy-a0rx82 36.5% GIGRAHVMGSSLGGQVAIELAAKNPRTVDKLVLVSSSGIMKSSTPALDEYVMTALYPNKWMAMEIFARMSASG--TADEAIVDGFIERMRLPNARMAFLSSILGLKNAPVVTPLLNAIDS consensus/100% tItp..lhGSShGGQlhhE..h.p...hc+hlLlSsuGh..psT.sLp.Yh.ssLYPsh..h.p.FthMut.....hp..hlpsahpRMp.PNu+huhhSolLuhpps..lp..L..I.. consensus/90% tIppshlhGSShGGQlshEh.hpp.shhcKllLVSPuGs..+sT.sLspYlhouLYPsh-sh.puFphMuspt...lc..hlcsahpRM+LPNAKhuhlSTLLuh+psp.lpppL.tIph consensus/80% pI+pPlllGSSFGGQLslEaslpp.caFcKlILVSPAGT.c+sThsLsQYIaSuLYPTh-NsppuFphMussp.ahlc-.hlKDalNRM+LPNAKauhlSTLLAhR+sppLpp+LhEIsh consensus/70% pI+NPIlIGSSFGGQLslEYuLpHpDaFcKIILVSPAGThc+sTasLSQYIFSuLYPTh-NsccAFpMMuNNppaplD-thVKDalNRMRLPNAKYuhISTLLAhR+spsLpc+LsEIsh 1 9arch-a0a5b2yw09 100.0% PALVIWGSDDTTIPVENIEYF-KQIPMVETLVMEGCGHTPYVEKPKEFFRIIEKFIDSE- 2 9arch-a0a484ii63 76.7% PTLVIWGSEDSTIPVENIEYF-KQIPIVETHIMEGCGHTPYVEKPHEFYEIIKKFIES-- 3 9arch-a0a557st69 72.7% PTLVIWGRNDTTIPVENIEYF-KEMPVVETVIMEECGHTPYVEKPTEFYQVIEKFIDS-- 4 9arch-a0a838d7k0 73.9% PTLVIWGRNDTTIPVENIEYF-KEMSIVETVIMEDCGHTPYVEKPVEFYEIIEKFIDS-- 5 9arch-a0a654lzk8 75.3% PTLVIWGRNDTTIPVENIEYF-KQMPNGKTLIMEECGHTPYVEKPFEFYEIIEKFIDS-- 6 9arch-a0a838naf7 60.9% PTLVIWGRNDATIPVSNLDYF-KVNPSIKTCVMEDCGHTPFVENPKEFYKLVKDFLET-- 7 9arch-a0a838w2h7 59.4% PTLVIWGRNDATIPVNNIEYF-KENPSIKTCVMDECGHTPFVEKPQEFYKLVKDFIESEF 8 unccr-Q8NKN6 55.1% PTLVIWGKEDNTIPVENIEYF-RGIPFVKTCIMSDCGHVPFVEKPLEFYKIVKEFIDS-- 9 9arch-b3t6z1 40.9% PTLIVWGENDPIIPIEYAQSFVSGINDCRFYKMTGCGHVPYAEKPNVFFQIVSDFLN--- 10 censy-a0rx82 36.5% PSLVIWGSLDPVIPIEHAEGFVSGIRNCAFHRMEGSGHTPFVDHPSEFAKIVLGFLAE-- consensus/100% PsLllWGp.DshIPlp.hp.F.p....hthhhMptsGHsPas-pP..Fhpll.tFlt... consensus/90% PoLVIWGppDssIPlpph-hF.pt.s.hchhhMptCGHsPaVE+P.EFapllpcFlpp.. consensus/80% PTLVIWGppDsTIPVENlEYF.+ths.scThlM-tCGHTPaVEKP.EFacllccFl-o.. consensus/70% PTLVIWGcsDsTIPVENIEYF.KthP.lcThlMEsCGHTPaVEKPpEFYcIlccFI-S.. |
MView 1.56, Copyright © 1997-2013 Nigel P. Brown
#protein: highlight amino acid physicochemical properties
hydrophobic => bright-green { A, G, I, L, M, P, V }
large hydrophobic => dark-green { F, H, W, Y }
cystein => yellow { C }
negative charge => bright-blue { D, E }
positive charge => bright-red { K, R }
polar => purple { N, Q }
small alcohol => dull-blue { S , T }
any => dark-gray { X }
#protein consensus: report conserved physicochemical classes, derived from the Venn diagrams of Taylor W. R. (1986).
# The classification of amino acid conservation.
#J. Theor. Biol. 119:205-218.
alcohol => o { S, T }
aliphatic => l { I, L, V }
aromatic => a { F, H, W, Y }
charged => c { D, E, H, K, R }
hydrophobic => h { A, C, F, G, H, I, K, L, M, R, T, V, W, Y }
negative => - { D, E }
polar => p { C, D, E, H, K, N, Q, R, S, T }
positive => + { H, K, R }
small => s { A, C, D, G, N, P, S, T, V }
tiny => u { A, G, S }
turnlike => t { A, C, D, E, G, H, K, N, Q, R, S, T }