Reference sequence (1): 9actn-k0p1p9 Identities normalised by aligned length. Colored by: consensus/70% and property |
1 9actn-k0p1p9 100.0% ----------------MVSRDGTPIRGFSRPGPG--------ETLVLVHGVAMDRRIWAESGFLDAV-PDAHVLALDLRGRGESGRVGTARGHALARYVEDVRAVLDGFGLARYSLFGTF 2 strsc-a0a117ee86 73.4% MRDADGTRRGATEPFEVVSRDGTPIRGFSRPGPG--------EALVLVHGVAMDRRIWAESGFLDAV-PDAHVLALDLRGRGESGRVGTPEGHALARYVEDVRAVLDGFGQDRYSLFGTY 3 strsw-c9z180 77.0% ----------------MVSRDGTPIRGFSRPGPG--------ETLVLVHGVAMDRRIWAESGFLDAV-PNAHVLALDLRGRGESGRVGTPEGHALARCVEDVRAVLDGFGQDRYSLFGTY 4 9actn-k4mhv9 80.9% MRDGNGTSR--RDVFEVFSRDGTPIRGFSRPGPG--------ETVVLVHGVAMDRRIWAESGFLDAL-PDAHVLALDLRGRGESGRVGTAEGHALRRYVEDVRAVLDRFGRARYSLFGTF 5 9actn-l1l6k1 64.5% M------------GFEVVSRDGTVIRGFERPGPG--------EAVVLVHGVAMDRRIWPESGFLDAL-TGAHVIALDLRGRGESGRGGTPEGHGIDRYVEDVRAVLDGFGRDRYSVFGTY 6 9actn-P028797636 73.9% MS---SGRPGGPEAFEVTSRDGTLIRGVRRPGPG--------EPLVLVHGVAMDRRIWYESGFLDALGGDAHVITVDLRGRGESEKVGSAEGHGIDRYVEDLRAVFDRFGARRYGVFGTY 7 9actn-P161684282 61.0% ------MRQPDLEPFETASADGARLRGIRRPGSG--------EPIVLVHGVAMDRRIWVDSGFLDAL-PDADILALDLRGRGASERVGAPERHGIDRHVEDVRAVMDLFGHPGYAVFGVY 8 salto-P080676991 61.0% ------MRQRDLESFETTSADGTRLHGVRRPGAG--------EPLVLVHGVAMDSRIWADSGFLDAL-PDADLIALDLRGRGTSERVGLPERHGIDRHVEDVRAVMDLFGRPGYTVFGVY 9 9actn-k4jvv8 60.4% MR---SPDREQTERFEVASVDGTLLRGFSRAARGSSDARGEPETLVLLHGVAMDHRVWSESSFLDALPDDVHVVAPDLRGRGESDPGHSAEGHAIDRYVEDVRAVLGFFGRERYSLFGLY 10 stron-P109280139 62.5% ------MRADTLDPFTVVSADGALLRGFRRPGPG--------PTAVLVHGVAMDTGVWLESGFLGEL-AGMEVLALDLRGRGGSERVGSARRHAVEHCVADVRAVLDAFPRERYSLFGLY consensus/100% ................hhShDGs.l+GhpRsu.G.........shVLlHGVAMDptlW.-SuFLstl.sshclls.DLRGRGtSt.st.sctHult+hVtDlRAVhshFs..tYslFGha consensus/90% ................hsStDGs.lRGhpRPGsG........EslVLVHGVAMDpRlW.-SGFLDAl.ssscllAlDLRGRGtSt+sGssctHultRhVEDVRAVhDhFGt.tYulFGha consensus/80% ..............FpssStDGT.lRGhpRPGsG........EslVLVHGVAMD+RIWsESGFLDAl.ssAcVlALDLRGRGpStRVGosEtHulsRaVEDVRAVhDhFGptRYolFGsY consensus/70% .......p....-sFEssStDGT.lRGFpRPGPG........EslVLVHGVAMDRRIWsESGFLDAL.sDAHVlALDLRGRGEStRVGosEGHulcRaVEDVRAVLDtFGpsRYSlFGsY 1 9actn-k0p1p9 100.0% FGGRIALQTAAVDPRVVRAFSFCAHAEQVEIPEDAVEEEAVAVEGPGGHAYLRDHFTGRGAPPWMVAACARVDPGELGAATRGLLHGSDRRTERGHPDQELVLITADGDADLAPFHAGEH 2 strsc-a0a117ee86 73.4% FGGRIALGTAAVDPRVVRAFSFCAHAEQVEIPEDAVEEEAVAVEGPGGHAYLHDHFTGRGAPPWMVAACARVDPGELGAATRGLLHGSDRRTERGHADQELVLITAEGDADLAPFRAGEH 3 strsw-c9z180 77.0% FGGRIALGTAAADPRVVRAFSFCAHAEQVEIPEDAVEEEAVAVEGPGGHAYLHDHFTGRGAPPWMVAACARVDPGELGAATRGLLHGSDRRTERGHADQELVLITAEGDADLAPFRAGEH 4 9actn-k4mhv9 80.9% FGGRIALQVAAVDTRVARAFSFCAHAEQVEIPEDAVEEEAVAVEGPGGHAYLRDHFTGRGAPPWMVEACARVDPGELGAATRGLLHGSDRRTERGHPDQELVLITADGDADLAPFHAGER 5 9actn-l1l6k1 64.5% FGGRIALRVAAVDKRVARAFSFCAHAEQVEIPEDAVEEEAVAVEGPGGHTYLHDHFTGRGAPPWMIEACARVDPAELGAATRGLLYGSDRRTERGHPEQELVLITAEGDADPTPFHDGER 6 9actn-P028797636 73.9% FGGRIALAAAGTDPRVARAFSFCAHGEEVEIPEGAVEEEARAVEGPDGHRYLRDHFTRKGAPPWMVEACGRVDRDELGAATRGLLYGSDRRTERGHPDQELVLITAEGDADLAPFHAGEK 7 9actn-P161684282 61.0% FGGRTALQVAAADARVTRAYSFCAHAEAVELPDDAVEEEAAAIEAPDGCRYLTDHFRRVGAPDWMVEACTRVDLPELAAVTRGLWHGSARGVERRHSGQDLVLITAEGDAELDVFTVGER 8 salto-P080676991 61.0% FGGRTALQVAAADPRVTRAYSFCAHAETVELPDDAVEEEAAAIEAPDGYRYLTDHFRRVGAPDWMVDACTRVDLPELAAVTRGLWYGSAQGVQRRHPGQDLVLVTAEQDAELDIFTAGER 9 9actn-k4jvv8 60.4% FGGRIALRVAEADRRVQRAFSFCAHGEAVEVPADAVEEEAKEIEGPGGYAYLRDHFSAAGAPAWMVSACDRVDQDELAAATRGLLHGSHQRAERGAADQDLVLITAEGDADLGTFREGSA 10 stron-P109280139 62.5% FGGRIALLTAAADARVARAVSFCAHAEEVALPEEAVEAEAAAIEGPGGRAYLRDHFTAAGAPRWMTDACERADLPELAAATRGLRYGSGQAVPPCRPGQELVLVTADQDPGLADFRAGER consensus/100% FGGRhAL.sAtsD.RV.RAhSFCAHuEtVtlPttAVEtEAhtlEuPsGhtYLpDHFpthGAP.WMhtACtRsD.sELuAsTRGLhaGStpts..ttstQ-LVLlTA-tDst.s.Fp.Gpt consensus/90% FGGRhALtsAusD.RVsRAaSFCAHuEtVElP--AVEEEAhAlEuPsGhtYLpDHFpthGAPsWMltACsRVD.sELuAsTRGLhaGSsptspRt+ssQ-LVLlTA-tDA-LssFpsGE+ consensus/80% FGGRIALtsAAsDsRVsRAaSFCAHAEpVElP-DAVEEEAsAlEGPsGatYL+DHFottGAPsWMVtACsRVD.sELuAATRGLhaGSsptsERsHssQ-LVLITA-GDA-LssF+sGE+ consensus/70% FGGRIALtsAAsDsRVsRAFSFCAHAEpVElPEDAVEEEAsAlEGPGG+sYL+DHFTutGAPsWMVpACsRVD.sELuAATRGLLaGScRRsERGHs-QELVLITAEGDADLusF+AGE+ 1 9actn-k0p1p9 100.0% RLGARLWLVGAPTRIRAAGRLAETGRRVADVLAGTGRGDEDAGVEPGAGTARAGRGGMTATGTTATEDTMWRRRRGLLPEGDPLVRALEEPAGRGRGHRLRAVCLIDPATGRPGPRTS 2 strsc-a0a117ee86 73.4% RLGARLWLVGAPTRIRAAGHLAETGRRVADVLAGAGRGA-PHPGPAGGRASRAG-----------------------------------------------AV--------------- 3 strsw-c9z180 77.0% RLGARLWLVGAPTRIRAAGHLAETGRRVADVLAGAERGGEPHPGPAGGRTSRAG-----------------------------------------------AV--------------- 4 9actn-k4mhv9 80.9% RLGAHLWLVDAPTRIKAAGRLAEVGRRVAGVLAEGGHGTGDAPAEARTTGDAPAEARASGTGVV------------------------------------------------------ 5 9actn-l1l6k1 64.5% RLGAQLWLVPAPTRIKAAAHLADVGHRVAEVLAGAAGVTESAEAQAASGTEARA--------------------------------------------------L------------- 6 9actn-P028797636 73.9% RLGARLWLVGSPTRVRAAGRLAEVGRRLARKEAGS----------------------------------------------------------------------------------- 7 9actn-P161684282 61.0% RLDARLWLVDSPTRVKAAHRLAEVGARVAAEIAGRAAGTGVR---------------------------------------------------------------------------- 8 salto-P080676991 61.0% RLGARLWLVDSPTRVRAAHRLAEVGARVAAETAGRTAGTGAR---------------------------------------------------------------------------- 9 9actn-k4jvv8 60.4% RLGARLWLVDSRTRVRAAARLAEVGTRTAELLTAAPAAMKGDA--------------------------------------------------------------------------- 10 stron-P109280139 62.5% RLGARLHLVGAPSRIRAAHRLAEAAGQLAGVPEEAG---------------------------------------------------------------------------------- consensus/100% RLsApLaLVsu.oRl+AAt+LA-sutphAt..ttt................................................................................... consensus/90% RLGA+LWLVsuPTRl+AAt+LAEsGtRlAt..stt................................................................................... consensus/80% RLGARLWLVsuPTRl+AAt+LAEsGtRlAthhAussts..st............................................................................ consensus/70% RLGARLWLVsuPTRlRAAuRLAEsGpRVAsllAGustustst............................................................................ |
MView 1.56, Copyright © 1997-2013 Nigel P. Brown
#protein: highlight amino acid physicochemical properties
hydrophobic => bright-green { A, G, I, L, M, P, V }
large hydrophobic => dark-green { F, H, W, Y }
cystein => yellow { C }
negative charge => bright-blue { D, E }
positive charge => bright-red { K, R }
polar => purple { N, Q }
small alcohol => dull-blue { S , T }
any => dark-gray { X }
#protein consensus: report conserved physicochemical classes, derived from the Venn diagrams of Taylor W. R. (1986).
# The classification of amino acid conservation.
#J. Theor. Biol. 119:205-218.
alcohol => o { S, T }
aliphatic => l { I, L, V }
aromatic => a { F, H, W, Y }
charged => c { D, E, H, K, R }
hydrophobic => h { A, C, F, G, H, I, K, L, M, R, T, V, W, Y }
negative => - { D, E }
polar => p { C, D, E, H, K, N, Q, R, S, T }
positive => + { H, K, R }
small => s { A, C, D, G, N, P, S, T, V }
tiny => u { A, G, S }
turnlike => t { A, C, D, E, G, H, K, N, Q, R, S, T }