Paper Report for: Makarova_2006_Proc.Natl.Acad.Sci.U.S.A_103_15611 Reference
Title: Comparative genomics of the lactic acid bacteria
Makarova K , Slesarev A , Wolf Y , Sorokin A , Mirkin B , Koonin E , Pavlov A , Pavlova N , Karamychev V and Mills D <40 more author(s)> Makarova K , Slesarev A , Wolf Y , Sorokin A , Mirkin B , Koonin E , Pavlov A , Pavlova N , Karamychev V , Polouchine N , Shakhova V , Grigoriev I , Lou Y , Rohksar D , Lucas S , Huang K , Goodstein DM , Hawkins T , Plengvidhya V , Welker D , Hughes J , Goh Y , Benson A , Baldwin K , Lee JH , Diaz-Muniz I , Dosti B , Smeianov V , Wechter W , Barabote R , Lorca G , Altermann E , Barrangou R , Ganesan B , Xie Y , Rawsthorne H , Tamir D , Parker C , Breidt F , Broadbent J , Hutkins R , O'Sullivan D , Steele J , Unlu G , Saier M , Klaenhammer T , Richardson P , Kozyavkin S , Weimer B , Mills D (- 40) Ref: Proc Natl Acad Sci U S A,
103 :15611, 2006 :
PubMed Abstract PubMedSearch: Makarova 2006 Proc.Natl.Acad.Sci.U.S.A 103 15611 PubMedID: 17030793 Gene_locus related to this paper: 9laco-c0xef2 ,
lacba-pepx ,
lacba-q03pm4 ,
lacba-q03sl1 ,
lacc3-pepx ,
lacc3-q03b36 ,
lacc3-q033u9 ,
lacc3-q035l1 ,
lacc3-q036j3 ,
lacc3-q036j8 ,
laccb-b3wcx2 ,
lacda-q1g8l1 ,
lacdb-q04b33 ,
lacdb-q04bn2 ,
lacdb-q04ci8 ,
lacdb-q04cw3 ,
lacdl-pepx ,
lacdl-pip ,
lacga-q040j4 ,
lacga-q040j9 ,
lacga-q040s2 ,
lacga-q042h9 ,
lacga-q043a3 ,
lacga-q043m1 ,
lacga-q045l3 ,
lacga-q046w1 ,
lacga-q047a5 ,
lacjo-q74hh0 ,
lacjo-q74ii3 ,
lacla-pepx ,
laclk-d2bl62 ,
lacls-q02y15 ,
lacls-q030e4 ,
lacls-q030p2 ,
lacrh-pepr ,
leumc-c2kjv5 ,
leumm-q03x93 ,
leumm-q03y60 ,
leumm-q03y71 ,
leumm-q03z72 ,
oenob-q04d10 ,
oenob-q04f06 ,
oenob-q04f19 ,
oenob-q04fw8 ,
oenob-q04ga3 ,
oenob-q04h47 ,
oenoe-a0nif9 ,
oenoe-a0nl98 ,
oenoe-d3lb54 ,
pedpa-pepx ,
pedpa-q03gh4 ,
pedpa-q03h47 ,
pedpa-q03hj2 ,
strt1-q5lz16 ,
strt1-q5lza1 ,
strt2-q5m420 ,
strtr-pepx ,
oenoe-k6pl10 ,
lacba-pip ,
lacca-k0n1x0 ,
lacpa-s2ter8 ,
lacpa-s2rz88 ,
pedpa-q03hz6 ,
oenob-q04dp7 Abstract
Lactic acid-producing bacteria are associated with various plant and animal niches and play a key role in the production of fermented foods and beverages. We report nine genome sequences representing the phylogenetic and functional diversity of these bacteria. The small genomes of lactic acid bacteria encode a broad repertoire of transporters for efficient carbon and nitrogen acquisition from the nutritionally rich environments they inhabit and reflect a limited range of biosynthetic capabilities that indicate both prototrophic and auxotrophic strains. Phylogenetic analyses, comparison of gene content across the group, and reconstruction of ancestral gene sets indicate a combination of extensive gene loss and key gene acquisitions via horizontal gene transfer during the coevolution of lactic acid bacteria with their habitats.
Related information
Gene_Locus | 9laco-c0xef2 , lacba-pepx , lacba-q03pm4 , lacba-q03sl1 , lacc3-pepx , lacc3-q03b36 , lacc3-q033u9 , lacc3-q035l1 , lacc3-q036j3 , lacc3-q036j8 , laccb-b3wcx2 , lacda-q1g8l1 , lacdb-q04b33 , lacdb-q04bn2 , lacdb-q04ci8 , lacdb-q04cw3 , lacdl-pepx , lacdl-pip , lacga-q040j4 , lacga-q040j9 , lacga-q040s2 , lacga-q042h9 , lacga-q043a3 , lacga-q043m1 , lacga-q045l3 , lacga-q046w1 , lacga-q047a5 , lacjo-q74hh0 , lacjo-q74ii3 , lacla-pepx , laclk-d2bl62 , lacls-q02y15 , lacls-q030e4 , lacls-q030p2 , lacrh-pepr , leumc-c2kjv5 , leumm-q03x93 , leumm-q03y60 , leumm-q03y71 , leumm-q03z72 , oenob-q04d10 , oenob-q04f06 , oenob-q04f19 , oenob-q04fw8 , oenob-q04ga3 , oenob-q04h47 , oenoe-a0nif9 , oenoe-a0nl98 , oenoe-d3lb54 , pedpa-pepx , pedpa-q03gh4 , pedpa-q03h47 , pedpa-q03hj2 , strt1-q5lz16 , strt1-q5lza1 , strt2-q5m420 , strtr-pepx , oenoe-k6pl10 , lacba-pip , lacca-k0n1x0 , lacpa-s2ter8 , lacpa-s2rz88 , pedpa-q03hz6 , oenob-q04dp7
Citations formats
Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, Huang K, Goodstein DM, Hawkins T, Plengvidhya V, Welker D, Hughes J, Goh Y, Benson A, Baldwin K, Lee JH, Diaz-Muniz I, Dosti B, Smeianov V, Wechter W, Barabote R, Lorca G, Altermann E, Barrangou R, Ganesan B, Xie Y, Rawsthorne H, Tamir D, Parker C, Breidt F, Broadbent J, Hutkins R, O'Sullivan D, Steele J, Unlu G, Saier M, Klaenhammer T, Richardson P, Kozyavkin S, Weimer B, Mills D (2006) Proc Natl Acad Sci U S A 103 : 15611-6Proc Natl Acad Sci U S A 103 : 15611-6
