Paper Report for: Jaillon_2004_Nature_431_946 Reference
Title: Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
Jaillon O , Aury JM , Brunet F , Petit JL , Stange-Thomann N , Mauceli E , Bouneau L , Fischer C , Ozouf-Costaz C and Roest Crollius H <51 more author(s)>
Jaillon O , Aury JM , Brunet F , Petit JL , Stange-Thomann N , Mauceli E , Bouneau L , Fischer C , Ozouf-Costaz C , Bernot A , Nicaud S , Jaffe D , Fisher S , Lutfalla G , Dossat C , Segurens B , Dasilva C , Salanoubat M , Levy M , Boudet N , Castellano S , Anthouard V , Jubin C , Castelli V , Katinka M , Vacherie B , Biemont C , Skalli Z , Cattolico L , Poulain J , de Berardinis V , Cruaud C , Duprat S , Brottier P , Coutanceau JP , Gouzy J , Parra G , Lardier G , Chapple C , McKernan KJ , McEwan P , Bosak S , Kellis M , Volff JN , Guigo R , Zody MC , Mesirov J , Lindblad-Toh K , Birren B , Nusbaum C , Kahn D , Robinson-Rechavi M , Laudet V , Schachter V , Quetier F , Saurin W , Scarpelli C , Wincker P , Lander ES , Weissenbach J , Roest Crollius H (- 51)
Ref: Nature,
431 :946, 2004 :
PubMed Abstract PubMedSearch: Jaillon 2004 Nature 431 946 PubMedID: 15496914 Gene_locus related to this paper: tetng-3neur ,
tetng-4neur ,
tetng-ACHE ,
tetng-BCHE ,
tetng-h3cfz4 ,
tetng-h3ci57 ,
tetng-h3cl30 ,
tetng-h3cnh2 ,
tetng-nlgn2b ,
tetng-h3czr1 ,
tetng-h3dbr5 ,
tetng-nlgn2a ,
tetng-nlgn3b ,
tetng-q4ref8 ,
tetng-q4rjp3 ,
tetng-q4rjy3 ,
tetng-q4rk53 ,
tetng-q4rk63 ,
tetng-q4rk66 ,
tetng-q4rkk3 ,
tetng-q4rli3 ,
tetng-q4rn09 ,
tetng-q4rqj4 ,
tetng-q4rqz6 ,
tetng-q4rr22 ,
tetng-q4rru9 ,
tetng-q4rtq6 ,
tetng-q4rvf8 ,
tetng-q4rwa0 ,
tetng-q4rx90 ,
tetng-q4ryv8 ,
tetng-q4ryz3 ,
tetng-q4s0h8 ,
tetng-q4s5x0 ,
tetng-q4s6r1 ,
tetng-q4s6t6 ,
tetng-q4s7e3 ,
tetng-q4s7x6 ,
tetng-q4s8t5 ,
tetng-q4s9w9 ,
tetng-q4s050 ,
tetng-q4s091 ,
tetng-q4s144 ,
tetng-q4s309 ,
tetng-q4s578 ,
tetng-q4sal4 ,
tetng-q4sbm6 ,
tetng-q4sbp0 ,
tetng-q4sbu0 ,
tetng-q4sd49 ,
tetng-q4ser6 ,
tetng-q4sfm7 ,
tetng-q4sgm5 ,
tetng-q4sgv2 ,
tetng-q4sh74 ,
tetng-q4shl7 ,
tetng-q4si60 ,
tetng-q4sie5 ,
tetng-q4sku6 ,
tetng-q4smu0 ,
tetng-q4smy3 ,
tetng-q4snp0 ,
tetng-q4snq3 ,
tetng-q4spa7 ,
tetng-q4spq0 ,
tetng-q4sqr3 ,
tetng-q4sty0 ,
tetng-q4suu2 ,
tetng-q4suz1 ,
tetng-q4sxh3 ,
tetng-q4syn6 ,
tetng-q4szk0 ,
tetng-q4szy0 ,
tetng-q4t3m9 ,
tetng-q4t4a1 ,
tetng-q4t6m1 ,
tetng-q4t7r6 ,
tetng-q4t173 ,
tetng-q4t826 ,
tetng-q4t920 ,
tetng-q4ta33 ,
tetng-q4tab8 ,
tetng-q4tb62 ,
tetng-q4tbe2 ,
tetng-h3dbw2 ,
tetng-h3cpc8 ,
tetng-h3cjy0 ,
tetng-h3d966 ,
tetng-h3d3e3 ,
tetng-h3d961 ,
tetng-h3ctg6 ,
tetng-h3dde8 ,
tetng-h3dde9 ,
tetng-h3det9 ,
tetng-h3cre8 ,
tetng-h3dfb4 ,
tetng-h3clj8 Abstract
Tetraodon nigroviridis is a freshwater puffer fish with the smallest known vertebrate genome. Here, we report a draft genome sequence with long-range linkage and substantial anchoring to the 21 Tetraodon chromosomes. Genome analysis provides a greatly improved fish gene catalogue, including identifying key genes previously thought to be absent in fish. Comparison with other vertebrates and a urochordate indicates that fish proteins have diverged markedly faster than their mammalian homologues. Comparison with the human genome suggests approximately 900 previously unannotated human genes. Analysis of the Tetraodon and human genomes shows that whole-genome duplication occurred in the teleost fish lineage, subsequent to its divergence from mammals. The analysis also makes it possible to infer the basic structure of the ancestral bony vertebrate genome, which was composed of 12 chromosomes, and to reconstruct much of the evolutionary history of ancient and recent chromosome rearrangements leading to the modern human karyotype.
        
Related information
Gene_Locus | tetng-3neur , tetng-4neur , tetng-ACHE , tetng-BCHE , tetng-h3cfz4 , tetng-h3ci57 , tetng-h3cl30 , tetng-h3cnh2 , tetng-nlgn2b , tetng-h3czr1 , tetng-h3dbr5 , tetng-nlgn2a , tetng-nlgn3b , tetng-q4ref8 , tetng-q4rjp3 , tetng-q4rjy3 , tetng-q4rk53 , tetng-q4rk63 , tetng-q4rk66 , tetng-q4rkk3 , tetng-q4rli3 , tetng-q4rn09 , tetng-q4rqj4 , tetng-q4rqz6 , tetng-q4rr22 , tetng-q4rru9 , tetng-q4rtq6 , tetng-q4rvf8 , tetng-q4rwa0 , tetng-q4rx90 , tetng-q4ryv8 , tetng-q4ryz3 , tetng-q4s0h8 , tetng-q4s5x0 , tetng-q4s6r1 , tetng-q4s6t6 , tetng-q4s7e3 , tetng-q4s7x6 , tetng-q4s8t5 , tetng-q4s9w9 , tetng-q4s050 , tetng-q4s091 , tetng-q4s144 , tetng-q4s309 , tetng-q4s578 , tetng-q4sal4 , tetng-q4sbm6 , tetng-q4sbp0 , tetng-q4sbu0 , tetng-q4sd49 , tetng-q4ser6 , tetng-q4sfm7 , tetng-q4sgm5 , tetng-q4sgv2 , tetng-q4sh74 , tetng-q4shl7 , tetng-q4si60 , tetng-q4sie5 , tetng-q4sku6 , tetng-q4smu0 , tetng-q4smy3 , tetng-q4snp0 , tetng-q4snq3 , tetng-q4spa7 , tetng-q4spq0 , tetng-q4sqr3 , tetng-q4sty0 , tetng-q4suu2 , tetng-q4suz1 , tetng-q4sxh3 , tetng-q4syn6 , tetng-q4szk0 , tetng-q4szy0 , tetng-q4t3m9 , tetng-q4t4a1 , tetng-q4t6m1 , tetng-q4t7r6 , tetng-q4t173 , tetng-q4t826 , tetng-q4t920 , tetng-q4ta33 , tetng-q4tab8 , tetng-q4tb62 , tetng-q4tbe2 , tetng-h3dbw2 , tetng-h3cpc8 , tetng-h3cjy0 , tetng-h3d966 , tetng-h3d3e3 , tetng-h3d961 , tetng-h3ctg6 , tetng-h3dde8 , tetng-h3dde9 , tetng-h3det9 , tetng-h3cre8 , tetng-h3dfb4 , tetng-h3clj8
Citations formats
Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, Segurens B, Dasilva C, Salanoubat M, Levy M, Boudet N, Castellano S, Anthouard V, Jubin C, Castelli V, Katinka M, Vacherie B, Biemont C, Skalli Z, Cattolico L, Poulain J, de Berardinis V, Cruaud C, Duprat S, Brottier P, Coutanceau JP, Gouzy J, Parra G, Lardier G, Chapple C, McKernan KJ, McEwan P, Bosak S, Kellis M, Volff JN, Guigo R, Zody MC, Mesirov J, Lindblad-Toh K, Birren B, Nusbaum C, Kahn D, Robinson-Rechavi M, Laudet V, Schachter V, Quetier F, Saurin W, Scarpelli C, Wincker P, Lander ES, Weissenbach J, Roest Crollius H (2004) Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotypeNature 431 : 946-57 Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, Segurens B, Dasilva C, Salanoubat M, Levy M, Boudet N, Castellano S, Anthouard V, Jubin C, Castelli V, Katinka M, Vacherie B, Biemont C, Skalli Z, Cattolico L, Poulain J, de Berardinis V, Cruaud C, Duprat S, Brottier P, Coutanceau JP, Gouzy J, Parra G, Lardier G, Chapple C, McKernan KJ, McEwan P, Bosak S, Kellis M, Volff JN, Guigo R, Zody MC, Mesirov J, Lindblad-Toh K, Birren B, Nusbaum C, Kahn D, Robinson-Rechavi M, Laudet V, Schachter V, Quetier F, Saurin W, Scarpelli C, Wincker P, Lander ES, Weissenbach J, Roest Crollius H (2004) Nature 431 : 946-57