Gene_locus Report for: trica-d2a514 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein GLEAN_15266
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Protostomia: N E > Ecdysozoa: N E > Panarthropoda: N E > Arthropoda: N E > Mandibulata: N E > Pancrustacea: N E > Hexapoda: N E > Insecta: N E > Dicondylia: N E > Pterygota: N E > Neoptera: N E > Holometabola: N E > Coleoptera: N E > Polyphaga: N E > Cucujiformia: N E > Tenebrionoidea: N E > Tenebrionidae: N E > Tenebrionidae incertae sedis: N E > Tribolium: N E > Tribolium castaneum: N E ABHD11-Acetyl_transferase :
trica-d2a4s2 Tribolium castaneum (Red flour beetle). Alpha/beta hydrolase domain-containing protein 11-like Protein .
ABHD13-BEM46 :
trica-d6wvw8 Tribolium castaneum (Red flour beetle). Alpha/beta hydrolase domain-containing protein 13-like Protein .
ABHD18 :
trica-d6w7t0 Tribolium castaneum (Red flour beetle). Putative uncharacterized protein .
abh_upf0017 :
trica-d6wpl0 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein .
ACHE :
trica-ACHE1 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-ACHE2 Tribolium castaneum (Red flour beetle) Acetylcholinesterase .
Acidic_Lipase :
trica-d2a0g9 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein GLEAN_07264 ,
trica-d2a0h0 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein GLEAN_07263 ,
trica-d2a0w9 Tribolium castaneum (Red flour beetle) Lipase ,
trica-d2a0x0 Tribolium castaneum (Red flour beetle) Lipase ,
trica-d2a0x1 Tribolium castaneum (Red flour beetle) Lipase ,
trica-d2a0x3 Tribolium castaneum (Red flour beetle) Lipase ,
trica-d2a0x4.1 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein GLEAN_07184 ,
trica-d2a0x4.2 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein GLEAN_07184 ,
trica-d2a0x6 Tribolium castaneum (Red flour beetle) Lipase ,
trica-d2a3c3 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein GLEAN_07538 ,
trica-d2a3g9 Tribolium castaneum (Red flour beetle) Lipase ,
trica-d2a309 Tribolium castaneum (Red flour beetle) Lipase ,
trica-d6x0z2 Tribolium castaneum (Red flour beetle) Lipase ,
trica-d6x0z5 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6x0z6 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein .
Carb_B_Arthropoda :
trica-d2a5y5 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein GLEAN_15089 ,
trica-d2a515 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein GLEAN_15265 ,
trica-d2a516 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein GLEAN_15455 ,
trica-d2a577 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein GLEAN_15230 ,
trica-d2a578 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein GLEAN_15229 ,
trica-d6wd73 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wd74 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-A0A139WM97 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wfu3 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wjs3 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wnv1 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wu38 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wu39 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wu40 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wu41 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wu44 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wvk5 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wwu9 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wwv0 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wxz0 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wyy1 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wyy2 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6x4b2 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6x4e8 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6x4e9 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6x197 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d7eip7 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d7eld3 Tribolium castaneum (Red flour beetle) Esterase 6 ,
trica-q5wm37 Tribolium castaneum (Red flour beetle) putative esterase (EC 3.1.1.1) ,
trica-q5wm43 Tribolium castaneum (Red flour beetle) putative esterase (EC 3.1.1.1) (fragment) ,
trica-q5zex9 Tribolium castaneum (Red flour beetle) esterase (EC 3.1.1.1) (fragment) ,
trica-a0a139w8k4 Tribolium castaneum (Red flour beetle), Esterase P-like Protein ,
trica-a0a139wae8 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-a0a139wdh2 Tribolium castaneum (Red flour beetle), Carboxylic ester hydrolase ,
trica-a0a139wff6.1 Tribolium castaneum (Red flour beetle), Uncharacterized protein ,
trica-a0a139wff6.2 Tribolium castaneum (Red flour beetle), Uncharacterized protein ,
trica-a0a139wmj7 Tribolium castaneum (Red flour beetle), Carboxylic ester hydrolase .
DPP4N_Peptidase_S9 :
trica-d6wd50 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wj57 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wj59 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wl31 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wqr4 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6ws52 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein .
Gliotactin :
trica-d6w7h2 Tribolium castaneum (Red flour beetle) Gliotactin .
Juvenile_hormone_esterase :
trica-d7us45 Tribolium castaneum (Red flour beetle) Juvenile hormone esterase .
Kynurenine-formamidase :
trica-d6x4h0 Tribolium castaneum (Red flour beetle). N-formylkynurenine formamidase ,
trica-d6x4h1 Tribolium castaneum (Red flour beetle). N-formylkynurenine formamidase .
Maspardin-ACP33-SPG21_like :
trica-d6wqd6 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein .
Ndr_family :
trica-d6wie5 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein .
Neuroligin :
trica-a0a139whe8 Tribolium castaneum (Red flour beetle), Neuroligin-1-like Protein ,
trica-a0a139wht7 Tribolium castaneum (Red flour beetle), Neuroligin-1-like Protein ,
trica-a0a139wi26 Tribolium castaneum (Red flour beetle), Neuroligin-4, Y-linked-like Protein ,
trica-a0a139wi80 Tribolium castaneum (Red flour beetle), Neuroligin-3-like Protein ,
trica-a0a139wiv4 Tribolium castaneum (Red flour beetle), Acetylcholinesterase-like Protein .
Neurotactin :
trica-d2a2b8 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein GLEAN_07674 .
NLS3-Tex30 :
trica-d6wac8 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein .
OtherNon-catalytic_C :
trica-d6w6x8 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6w7f9 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wsm0 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein .
Pancreatic_lipase :
trica-a0a139wc96 Tribolium castaneum (Red flour beetle). Pancreatic triacylglycerol lipase-like Protein ,
trica-d6x325 Tribolium castaneum (Red flour beetle). Inactive pancreatic lipase-related protein 1-like Protein .
Pectinacetylesterase-Notum :
trica-d6wan4 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein .
PPase_methylesterase_euk :
trica-d6w855 Tribolium castaneum (Red flour beetle) Protein phosphatase methylesterase 1 .
Prolylcarboxypeptidase :
trica-d6w8e7 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wgl2 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein ,
trica-d6wvz7 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein .
SERHL :
trica-d2a2h1 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein GLEAN_07853 .
Valacyclovir-hydrolase :
trica-d6w9c0 Tribolium castaneum (Red flour beetle) Putative uncharacterized protein Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: trica-d2a514 Colored MSA for Carb_B_Arthropoda (raw)
MRLVLLAIFLTACQAELIVELPNLGKVEGRLTTMNGLKVHRFAGIPYAQP
PVGENRFEAPKPVEPWDGVWKPDTTYRCMQFTRLPHMDEDHVIGEEDCLY
LTVYTAHLNASFDVVVYIHGGDFATGYASVYEPDYFIDKNIVFVNLNYRL
GPLGFLSTEDDVVPGNNGLKDQILALKFIKKYIQHFGGTPDSITLFGDGT
SVNFHYLSPQSRGLFHRGWSMSGTMLVPWALMEQPLAQTKKLATIVGCGT
DETMIKCLKSRPARQIALTVPRYQAWWYLSFAQFGPVIDSWATQPVLPTH
PYQIIKNQQVYDVPWIASFTKSEGLYHLDEVYNNQLLTKLDDNWNKYIPA
ILYYNYTVDRDLQDEVSQKIRKYYLGEKKLSKKTFRELVAMFSDRIFIND
IVKTAKLMAKSMKSPTYALKFEYRSMNSWFEHETESGRNFGAAHADDVPY
IFNMGLFDTSRNHRDRAMIKIFVDLLTSFSDSSIPKVKKIEWPQVPKNAT
DDLTYLRIGAPSDVTVETSIRSTASFWDSLPIKENEKLP
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M R L V L L A I F L T A C Q A E L I V E L P N L G K V E G R L T T M N G L K V H R F A G I P Y A Q P P V G E N R F E A P K P V E P W D G V W K P D T T Y R C M Q F T R L P H M D E D H V I G E E D C L Y L T V Y T A H L N A S F D V V V Y I H G G D F A T G Y A S V Y E P D Y F I D K N I V F V N L N Y R L G P L G F L S T E D D V V P G N N G L K D Q I L A L K F I K K Y I Q H F G G T P D S I T L F G D G T S V N F H Y L S P Q S R G L F H R G W S M S G T M L V P W A L M E Q P L A Q T K K L A T I V G C G T D E T M I K C L K S R P A R Q I A L T V P R Y Q A W W Y L S F A Q F G P V I D S W A T Q P V L P T H P Y Q I I K N Q Q V Y D V P W I A S F T K S E G L Y H L D E V Y N N Q L L T K L D D N W N K Y I P A I L Y Y N Y T V D R D L Q D E V S Q K I R K Y Y L G E K K L S K K T F R E L V A M F S D R I F I N D I V K T A K L M A K S M K S P T Y A L K F E Y R S M N S W F E H E T E S G R N F G A A H A D D V P Y I F N M G L F D T S R N H R D R A M I K I F V D L L T S F S D S S I P K V K K I E W P Q V P K N A T D D L T Y L R I G A P S D V T V E T S I R S T A S F W D S L P I K E N E K L P
References
Title: BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneumKim HS , Murphy T , Xia J , Caragea D , Park Y , Beeman RW , Lorenzen MD , Butcher S , Manak JR , Brown SJ Ref: Nucleic Acids Research, 38 :D437, 2010 : PubMed Abstract ESTHER: Kim_2010_Nucleic.Acids.Res_38_D437 PubMedSearch: Kim 2010 Nucleic.Acids.Res 38 D437 PubMedID: 19820115 Gene_locus related to this paper: trica-ACHE1 ,
trica-ACHE2 ,
trica-d2a0g9 ,
trica-d2a0h0 ,
trica-d2a0w9 ,
trica-d2a0x0 ,
trica-d2a0x1 ,
trica-d2a0x3 ,
trica-d2a0x4.1 ,
trica-d2a0x4.2 ,
trica-d2a0x6 ,
trica-d2a2b8 ,
trica-d2a2h1 ,
trica-d2a3c3 ,
trica-d2a3g9 ,
trica-d2a5y5 ,
trica-d2a309 ,
trica-d2a514 ,
trica-d2a515 ,
trica-d2a516 ,
trica-d2a577 ,
trica-d2a578 ,
trica-d6w6x8 ,
trica-d6w7f9 ,
trica-d6w7h2 ,
trica-d6w8e7 ,
trica-d6w9c0 ,
trica-d6w855 ,
trica-d6wac8 ,
trica-d6wan4 ,
trica-d6wd50 ,
trica-d6wd73 ,
trica-d6wd74 ,
trica-A0A139WM97 ,
trica-d6wfu3 ,
trica-d6wgl2 ,
trica-d6wj57 ,
trica-d6wj59 ,
trica-d6wjs3 ,
trica-d6wl31 ,
trica-d6wnv1 ,
trica-d6wpl0 ,
trica-d6wqd6 ,
trica-d6wqr4 ,
trica-d6ws52 ,
trica-d6wsm0 ,
trica-d6wu38 ,
trica-d6wu39 ,
trica-d6wu40 ,
trica-d6wu41 ,
trica-d6wu44 ,
trica-d6wvk5 ,
trica-d6wvz7 ,
trica-d6wwu9 ,
trica-d6wwv0 ,
trica-d6wxz0 ,
trica-d6wyy1 ,
trica-d6wyy2 ,
trica-d6x0z2 ,
trica-d6x0z5 ,
trica-d6x0z6 ,
trica-d6x4b2 ,
trica-d6x4e8 ,
trica-d6x4e9 ,
trica-d6x197 ,
trica-d7eip7 ,
trica-d7eld3 ,
trica-d7us45 ,
trica-q5wm43 ,
trica-q5zex9 ,
trica-d6wie5 ,
trica-d6w7t0 ,
trica-d6x4h0 ,
trica-d6x4h1 ,
trica-a0a139wae8 ,
trica-a0a139wc96 ,
trica-d6x325 ,
trica-d2a4s2 ,
trica-d6wvw8 Abstract
BeetleBase (http:\/\/www.beetlebase.org) has been updated to provide more comprehensive genomic information for the red flour beetle Tribolium castaneum. The database contains genomic sequence scaffolds mapped to 10 linkage groups (genome assembly release Tcas_3.0), genetic linkage maps, the official gene set, Reference Sequences from NCBI (RefSeq), predicted gene models, ESTs and whole-genome tiling array data representing several developmental stages. The database was reconstructed using the upgraded Generic Model Organism Database (GMOD) modules. The genomic data is stored in a PostgreSQL relatational database using the Chado schema and visualized as tracks in GBrowse. The updated genetic map is visualized using the comparative genetic map viewer CMAP. To enhance the database search capabilities, the BLAST and BLAT search tools have been integrated with the GMOD tools. BeetleBase serves as a long-term repository for Tribolium genomic data, and is compatible with other model organism databases.
Title: The genome of the model beetle and pest Tribolium castaneumRichards S , Gibbs RA , Weinstock GM , Brown SJ , Denell R , Beeman RW , Gibbs R , Bucher G , Friedrich M and Grossmann D <181 more author(s)> Richards S , Gibbs RA , Weinstock GM , Brown SJ , Denell R , Beeman RW , Gibbs R , Bucher G , Friedrich M , Grimmelikhuijzen CJ , Klingler M , Lorenzen M , Roth S , Schroder R , Tautz D , Zdobnov EM , Muzny D , Attaway T , Bell S , Buhay CJ , Chandrabose MN , Chavez D , Clerk-Blankenburg KP , Cree A , Dao M , Davis C , Chacko J , Dinh H , Dugan-Rocha S , Fowler G , Garner TT , Garnes J , Gnirke A , Hawes A , Hernandez J , Hines S , Holder M , Hume J , Jhangiani SN , Joshi V , Khan ZM , Jackson L , Kovar C , Kowis A , Lee S , Lewis LR , Margolis J , Morgan M , Nazareth LV , Nguyen N , Okwuonu G , Parker D , Ruiz SJ , Santibanez J , Savard J , Scherer SE , Schneider B , Sodergren E , Vattahil S , Villasana D , White CS , Wright R , Park Y , Lord J , Oppert B , Brown S , Wang L , Weinstock G , Liu Y , Worley K , Elsik CG , Reese JT , Elhaik E , Landan G , Graur D , Arensburger P , Atkinson P , Beidler J , Demuth JP , Drury DW , Du YZ , Fujiwara H , Maselli V , Osanai M , Robertson HM , Tu Z , Wang JJ , Wang S , Song H , Zhang L , Werner D , Stanke M , Morgenstern B , Solovyev V , Kosarev P , Brown G , Chen HC , Ermolaeva O , Hlavina W , Kapustin Y , Kiryutin B , Kitts P , Maglott D , Pruitt K , Sapojnikov V , Souvorov A , Mackey AJ , Waterhouse RM , Wyder S , Kriventseva EV , Kadowaki T , Bork P , Aranda M , Bao R , Beermann A , Berns N , Bolognesi R , Bonneton F , Bopp D , Butts T , Chaumot A , Denell RE , Ferrier DE , Gordon CM , Jindra M , Lan Q , Lattorff HM , Laudet V , von Levetsow C , Liu Z , Lutz R , Lynch JA , da Fonseca RN , Posnien N , Reuter R , Schinko JB , Schmitt C , Schoppmeier M , Shippy TD , Simonnet F , Marques-Souza H , Tomoyasu Y , Trauner J , Van der Zee M , Vervoort M , Wittkopp N , Wimmer EA , Yang X , Jones AK , Sattelle DB , Ebert PR , Nelson D , Scott JG , Muthukrishnan S , Kramer KJ , Arakane Y , Zhu Q , Hogenkamp D , Dixit R , Jiang H , Zou Z , Marshall J , Elpidina E , Vinokurov K , Oppert C , Evans J , Lu Z , Zhao P , Sumathipala N , Altincicek B , Vilcinskas A , Williams M , Hultmark D , Hetru C , Hauser F , Cazzamali G , Williamson M , Li B , Tanaka Y , Predel R , Neupert S , Schachtner J , Verleyen P , Raible F , Walden KK , Angeli S , Foret S , Schuetz S , Maleszka R , Miller SC , Grossmann D (- 181) Ref: Nature, 452 :949, 2008 : PubMed Abstract ESTHER: Richards_2008_Nature_452_949 PubMedSearch: Richards 2008 Nature 452 949 PubMedID: 18362917 Gene_locus related to this paper: trica-ACHE1 ,
trica-ACHE2 ,
trica-d2a0g9 ,
trica-d2a0h0 ,
trica-d2a0w9 ,
trica-d2a0x0 ,
trica-d2a0x1 ,
trica-d2a0x3 ,
trica-d2a0x4.1 ,
trica-d2a0x4.2 ,
trica-d2a0x6 ,
trica-d2a2b8 ,
trica-d2a2h1 ,
trica-d2a3c3 ,
trica-d2a3g9 ,
trica-d2a5y5 ,
trica-d2a309 ,
trica-d2a514 ,
trica-d2a515 ,
trica-d2a516 ,
trica-d2a577 ,
trica-d2a578 ,
trica-d6w6x8 ,
trica-d6w7f9 ,
trica-d6w7h2 ,
trica-d6w8e7 ,
trica-d6w9c0 ,
trica-d6w855 ,
trica-d6wac8 ,
trica-d6wan4 ,
trica-d6wd50 ,
trica-d6wd73 ,
trica-d6wd74 ,
trica-A0A139WM97 ,
trica-d6wfu3 ,
trica-d6wgl2 ,
trica-d6wj57 ,
trica-d6wj59 ,
trica-d6wjs3 ,
trica-d6wl31 ,
trica-d6wnv1 ,
trica-d6wpl0 ,
trica-d6wqd6 ,
trica-d6wqr4 ,
trica-d6ws52 ,
trica-d6wsm0 ,
trica-d6wu38 ,
trica-d6wu39 ,
trica-d6wu40 ,
trica-d6wu41 ,
trica-d6wu44 ,
trica-d6wvk5 ,
trica-d6wvz7 ,
trica-d6wwu9 ,
trica-d6wwv0 ,
trica-d6wxz0 ,
trica-d6wyy1 ,
trica-d6wyy2 ,
trica-d6x0z2 ,
trica-d6x0z5 ,
trica-d6x0z6 ,
trica-d6x4b2 ,
trica-d6x4e8 ,
trica-d6x4e9 ,
trica-d6x197 ,
trica-d7eip7 ,
trica-d7eld3 ,
trica-d7us45 ,
trica-q5wm43 ,
trica-q5zex9 ,
trica-d6wie5 ,
trica-d6w7t0 ,
trica-d6x4h0 ,
trica-d6x4h1 ,
trica-a0a139wae8 ,
trica-a0a139wc96 ,
trica-d6x325 ,
trica-d2a4s2 ,
trica-d6wvw8 Abstract
Tribolium castaneum is a member of the most species-rich eukaryotic order, a powerful model organism for the study of generalized insect development, and an important pest of stored agricultural products. We describe its genome sequence here. This omnivorous beetle has evolved the ability to interact with a diverse chemical environment, as shown by large expansions in odorant and gustatory receptors, as well as P450 and other detoxification enzymes. Development in Tribolium is more representative of other insects than is Drosophila, a fact reflected in gene content and function. For example, Tribolium has retained more ancestral genes involved in cell-cell communication than Drosophila, some being expressed in the growth zone crucial for axial elongation in short-germ development. Systemic RNA interference in T. castaneum functions differently from that in Caenorhabditis elegans, but nevertheless offers similar power for the elucidation of gene function and identification of targets for selective insect control.
Other Papers
