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Gene_locus Report for: strhe-ShD14

Striga hermonthica (Purple witchweed) (Buchnera hermonthica) Dwarf 14 ShD14 strigolactone receptor

Relationship
Family|RsbQ-like
Block| X
Position in NCBI Life Tree|Striga hermonthica
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > asterids: N E > lamiids: N E > Lamiales: N E > Orobanchaceae: N E > Buchnereae: N E > Striga: N E > Striga hermonthica: N E


Molecular evidence
Database
No mutation
2 structures: 5Z7Z, 6XFO
No kinetic





1 substrate:
Xilatone-Red
No inhibitor
2 Genbank : ALB07155, MF359002
2 UniProt : A0A0M5I7R9, A0A2U8XQ45
2 Structure : 6XFO, 5Z7Z
2 UniProt : A0A0M5I7R9, A0A2U8XQ45
2 Interpro : A0A0M5I7R9, A0A2U8XQ45
2 Pfam : A0A0M5I7R9, A0A2U8XQ45
2 PIRSF : A0A0M5I7R9, A0A2U8XQ45
2 SUPERFAM : A0A0M5I7R9, A0A2U8XQ45
Sequence
Graphical view for this peptide sequence: strhe-ShD14
Colored MSA for RsbQ-like (raw)
GPGYQDPNSSLLEALNVRVVGSGEKVLVLAHGVGTDQSAWQRILPYFVRD
HRVVLYDLVCAGSVNPDYFDFRRYTSLDAFVDDLLAILDALRLGRCTYVG
HSVSASIGILASIRRPDLFAKLILIGASPRFLNDKNYHGGFADGEIDTVF
AAMEANYAAWVSGFAPLAVGADVPEAVREFSRTLFNMRPDITLFVSRMVF
NSDLRGVLGLVTVPCSVLQTSKDHSVPESMAAYLKENLGGRTTVHMLDIE
GHLPHLSAPNLLAQELRRALPR
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

GPGYQDPNSSLLEALNVRVVGSGEKVLVLAHGVGTDQSAWQRILPYFVRD
HRVVLYDLVCAGSVNPDYFDFRRYTSLDAFVDDLLAILDALRLGRCTYVG
HSVSASIGILASIRRPDLFAKLILIGASPRFLNDKNYHGGFADGEIDTVF
AAMEANYAAWVSGFAPLAVGADVPEAVREFSRTLFNMRPDITLFVSRMVF
NSDLRGVLGLVTVPCSVLQTSKDHSVPESMAAYLKENLGGRTTVHMLDIE
GHLPHLSAPNLLAQELRRALPR


References
    Title: Structural analysis of HTL and D14 proteins reveals the basis for ligand selectivity in Striga
    Xu Y, Miyakawa T, Nosaki S, Nakamura A, Lyu Y, Nakamura H, Ohto U, Ishida H, Shimizu T and Tanokura M <1 more author(s)>
    Ref: Nat Commun, 9:3947, 2018 : PubMed

            

    Title: PLANT EVOLUTION. Convergent evolution of strigolactone perception enabled host detection in parasitic plants
    Conn CE, Bythell-Douglas R, Neumann D, Yoshida S, Whittington B, Westwood JH, Shirasu K, Bond CS, Dyer KA, Nelson DC
    Ref: Science, 349:540, 2015 : PubMed

            

    Title: PARASITIC PLANTS. Probing strigolactone receptors in Striga hermonthica with fluorescence
    Tsuchiya Y, Yoshimura M, Sato Y, Kuwata K, Toh S, Holbrook-Smith D, Zhang H, McCourt P, Itami K and Hagihara S <1 more author(s)>
    Ref: Science, 349:864, 2015 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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