Gene_Locus Report

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Gene_locus Report for: schja-Q5DDP9

Schistosoma japonicum (Blood fluke, platyhelminth) clone zzd309 mrna sequence

Comment
Q5DDP9 differs at C-term


Relationship
Family|ABHD13-BEM46
Block| X
Position in NCBI Life Tree|Schistosoma japonicum
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Platyhelminthes: N E > Trematoda: N E > Digenea: N E > Strigeidida: N E > Schistosomatoidea: N E > Schistosomatidae: N E > Schistosoma: N E > Schistosoma japonicum: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AY222939, AY814325
1 UniProt : Q5DDP9
2 UniProt : Q86FC4, Q5DDP9
2 Interpro : Q86FC4, Q5DDP9
2 Pfam : Q86FC4, Q5DDP9
2 PIRSF : Q86FC4, Q5DDP9
2 SUPERFAM : Q86FC4, Q5DDP9
Sequence
Graphical view for this peptide sequence: schja-Q5DDP9
Colored MSA for ABHD13-BEM46 (raw)
MTSATCVNGSDPCLTEDLTMRRNLVNRLFLFIRPIHSQFSYWLMSPKSLC
SLINFNKSLHVSGLFILFVFGVPVSSSLNYIVLPLSLLISVLLLMLALWF
CFLYLEQTLVYACNEPLSSRLLYTNPSSFGFFTWELVKLHPNGKTGPTII
GFLLLQPNLYQRKSCPVVLLLHGNAGNSTSRLPMCQILKNRFECNIFIID
YRGYGHSTGKPSEEGLYADCKCALDYLYTRNDLNDRKIFVLGRSLGGALA
IYLAGDPVSSRKICGVIIENTFTSITDAASHILNIPCKLPSRLFINQYPS
LAKLQSCCKSRKSSSAFPPMLLISGELDNIIPPTMMWKLAEAYENIVTKQ
QIQNDHSSNIYDDSSKGGSLSQKPDTFINSGTDGLVSFPDGHHNDTWFCN
QWSDVILRFIEQSSLRPKSTINENDLDISV
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MTSATCVNGSDPCLTEDLTMRRNLVNRLFLFIRPIHSQFSYWLMSPKSLC
SLINFNKSLHVSGLFILFVFGVPVSSSLNYIVLPLSLLISVLLLMLALWF
CFLYLEQTLVYACNEPLSSRLLYTNPSSFGFFTWELVKLHPNGKTGPTII
GFLLLQPNLYQRKSCPVVLLLHGNAGNSTSRLPMCQILKNRFECNIFIID
YRGYGHSTGKPSEEGLYADCKCALDYLYTRNDLNDRKIFVLGRSLGGALA
IYLAGDPVSSRKICGVIIENTFTSITDAASHILNIPCKLPSRLFINQYPS
LAKLQSCCKSRKSSSAFPPMLLISGELDNIIPPTMMWKLAEAYENIVTKQ
QIQNDHSSNIYDDSSKGGSLSQKPDTFINSGTDGLVSFPDGHHNDTWFCN
QWSDVILRFIEQSSLRPKSTINENDLDISV


Reference
    Title: Evolutionary and biomedical implications of a Schistosoma japonicum complementary DNA resource
    Hu W, Yan Q, Shen DK, Liu F, Zhu ZD, Song HD, Xu XR, Wang ZJ, Rong YP and Han ZG <14 more author(s)>
    Ref: Nat Genet, 35:139, 2003 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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