(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) > cellular organisms: NE > Bacteria: NE > Terrabacteria group: NE > Actinobacteria [phylum]: NE > Actinobacteria [class]: NE > Corynebacteriales: NE > Nocardiaceae: NE > Rhodococcus: NE > Rhodococcus erythropolis: NE
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) Rhodococcus erythropolis PR4: N, E.
Rhodococcus erythropolis SK121: N, E.
Rhodococcus qingshengii BKS 20-40: N, E.
Rhodococcus erythropolis CCM2595: N, E.
Rhodococcus sp. P27: N, E.
Rhodococcus qingshengii: N, E.
Rhodococcus erythropolis DN1: N, E.
Rhodococcus erythropolis R138: N, E.
Rhodococcus sp. 008: N, E.
Rhodococcus sp. 1139: N, E.
Rhodococcus enclensis: N, E.
LegendThis sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA METDVRPNLGEDGTLVIRARGGEARGYPDGGMFAWKGMPYAAAPVGERRF RAPQPAEPWDGVRDCREFGPIAPQGQSPAVPIDRAFKIDEDCLSINVWAP RPDGTPRPVMVWIHGGAYCLGSAAQTIYDGRHLAETGDVVLVSFNYRVGA LGFLDLSGFSTADTVFESNCGLRDQIAALEWVRDNIDAFGGDPSAVTVFG ESSGAGSITTLMTCPSAEGLFHRAIAQSPPATSVYGAERAKTVAERFLEL LSIAPEDAGDLLTTDLELLVKASDDLVNEIPTRIPGTLAMAPVVDRDLVP HYPVAAFQKGYAHRIPLIIGSNKDEASIFKFMKSPLMPVSAQSVEAMLQL LADDHPDISATKLAEIMSAYPDHAKPSGALALSRDAAFRMPTLWIADAHC RHSPTWVYRFDHATPMLKAARIGAGHATELPYVFGNFGTLNVDPTFWLGG RKAAMEVAGRIQRRWLAFARHAVPAALDGSKHWAPYEEERRSTLLIDSAD TLVSDPDHGLRVAWGNDVMGFN
Rhodococcus erythropolis strain R138 was isolated from the rhizosphere of Solanum tuberosum and selected for its capacity to degrade N-acyl-homoserine lactones, quorum-sensing signals used as communication molecules by the potato pathogens Pectobacterium and Dickeya. Here, we report the genome sequence of Rhodococcus erythropolis strain R138.
Title: Draft Genome Sequence of Rhodococcus qingshengii Strain BKS 20-40 Bala M, Kumar S, Raghava GP, Mayilraj S Ref: Genome Announc, 1:e0012813, 2013 : PubMed
We report the 5.8-Mb genome sequence of Rhodococcus qingshengii strain BKS 20-40, isolated from a palm tree rhizosphere soil sample from Bhitarkanika National Park, Odisha, India. The strain is capable of degrading cholesterol moiety. The draft genome of strain BKS 20-40 consists of 6,601,618 bp, with 62.4% G+C content.
Here, we report the draft genome sequence of radiation-resistant Rhodococcus erythropolis strain P27, isolated from leaves of Deschampsia antarctica Desv. (Poaceae) in the Admiralty Bay area, Antarctica.
Microbial degradation is considered to be the most acceptable method for degradation of chlorimuron-ethyl, a typical long-term residual sulfonylurea herbicide, but the underlying mechanism at the genetic and biochemical levels is unclear. In this work, the genome sequence of the chlorimuron-ethyl-degrading bacterium Rhodococcus erythropolis D310-1 was completed, and the gene clusters responsible for the degradation of chlorimuron-ethyl in D310-1 were predicted. A carboxylesterase gene, carE, suggested to be responsible for carboxylesterase de-esterification, was cloned from D310-1. CarE was expressed in Escherichia coli BL21 and purified to homogeneity. The active site of the chlorimuron-ethyl-degrading enzyme CarE and the biochemical activities of CarE were elucidated. The results demonstrated that CarE is involved in catalyzing the de-esterification of chlorimuron-ethyl. A carE deletion mutant strain, D310-1DeltacarE, was constructed, and the chlorimuron-ethyl degradation rate in the presence of 100mgL(-1) chlorimuron-ethyl within 120h decreased from 86.5 % (wild-type strain D310-1) to 58.2 % (mutant strain D310-1DeltacarE). Introduction of the plasmid pNit-carE restored the ability of the mutant strain to utilize chlorimuron-ethyl. This study is the first to demonstrate that carboxylesterase can catalyze the de-esterification reaction of chlorimuron-ethyl and provides new insights into the mechanism underlying the degradation of sulfonylurea herbicides and a theoretical basis for the utilization of enzyme resources.
Rhodococcus erythropolis strain R138 was isolated from the rhizosphere of Solanum tuberosum and selected for its capacity to degrade N-acyl-homoserine lactones, quorum-sensing signals used as communication molecules by the potato pathogens Pectobacterium and Dickeya. Here, we report the genome sequence of Rhodococcus erythropolis strain R138.
Title: Draft Genome Sequence of Rhodococcus qingshengii Strain BKS 20-40 Bala M, Kumar S, Raghava GP, Mayilraj S Ref: Genome Announc, 1:e0012813, 2013 : PubMed
We report the 5.8-Mb genome sequence of Rhodococcus qingshengii strain BKS 20-40, isolated from a palm tree rhizosphere soil sample from Bhitarkanika National Park, Odisha, India. The strain is capable of degrading cholesterol moiety. The draft genome of strain BKS 20-40 consists of 6,601,618 bp, with 62.4% G+C content.
Here, we report the draft genome sequence of radiation-resistant Rhodococcus erythropolis strain P27, isolated from leaves of Deschampsia antarctica Desv. (Poaceae) in the Admiralty Bay area, Antarctica.
