Gene_Locus Report

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Gene_locus Report for: rhisn-c3krv5

Rhizobium sp. (strain NGR234) Putative 3-hydroxyalkanoate synthetase

Relationship
Family|Duf_3141
Block| X
Position in NCBI Life Tree|Rhizobium sp.
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Alphaproteobacteria: N E > Rhizobiales: N E > Rhizobiaceae: N E > Rhizobium/Agrobacterium group: N E > Rhizobium: N E > Rhizobium sp.: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : CP000874
1 UniProt : C3KRV5
1 UniProt : C3KRV5
1 Interpro : C3KRV5
1 Pfam : C3KRV5
1 PIRSF : C3KRV5
1 SUPERFAM : C3KRV5
Sequence
Graphical view for this peptide sequence: rhisn-c3krv5
Colored MSA for Duf_3141 (raw)
MPKQSTIPTFADAFAYSLDAWQRSILFLDVMRQRGEQYDEHTAQTAPHVL
DYDAELVVDGRKLDKPVNYALARIIPLAGIAVDPLKRPFVVVDPRAGHGP
GIGGFKADSEIGVAMKAGHPCYLIGFLPEPIPGQTIEDIAGAEAIFLQTV
IARHPDADGKPCVVGNCQAGWAVMILAALRPELFGPIIIAGTPLSYWAGV
RGQYPMRYSGGLLGGSWLTALTSDLGAGIFDGAWLVQNFENQNPANTLWT
KQYNLYSNIDTEAGRYLGFERWWGGHVTLNAEEMQFIVDELFVGNKLAAG
EIRTSDGTAIDLRNIHSPIVVFCSKGDNITPPPQALDWILDLYDSVDEIR
AHGQTIVYAVHDKIGHLGIFVSAGVARKEHDEFASNIDLIDVLPPGLYEA
VLEPAREVVEGRDLVAGEWVMRCEARTLDDIRALGGNDIDDERRFATAAK
LSEVNLALYRTYLQPAVKAAVTPPIAEAMRRMHPLRLQYEIFGPSNPLMA
WIEAAAEHARENRKPTAAENPFLALQENMSRQIVDGLEAWRRTVEHLSEE
TFRAVYGAPVLQTALGIDSKSDRPRKPAKSHLHEELVKSRIASLRAEIAQ
GGLREALARALLFVGKARGGADERGFEAIRRLRRAHPTASQLTLPEFKAL
LRKQYFILLIDEEAALSAIPKLLPEDLEERRSGFNALREVLQASGAVTGD
AAERLQRIERLFGLESEAVPFVARKTARERRTS
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MPKQSTIPTFADAFAYSLDAWQRSILFLDVMRQRGEQYDEHTAQTAPHVL
DYDAELVVDGRKLDKPVNYALARIIPLAGIAVDPLKRPFVVVDPRAGHGP
GIGGFKADSEIGVAMKAGHPCYLIGFLPEPIPGQTIEDIAGAEAIFLQTV
IARHPDADGKPCVVGNCQAGWAVMILAALRPELFGPIIIAGTPLSYWAGV
RGQYPMRYSGGLLGGSWLTALTSDLGAGIFDGAWLVQNFENQNPANTLWT
KQYNLYSNIDTEAGRYLGFERWWGGHVTLNAEEMQFIVDELFVGNKLAAG
EIRTSDGTAIDLRNIHSPIVVFCSKGDNITPPPQALDWILDLYDSVDEIR
AHGQTIVYAVHDKIGHLGIFVSAGVARKEHDEFASNIDLIDVLPPGLYEA
VLEPAREVVEGRDLVAGEWVMRCEARTLDDIRALGGNDIDDERRFATAAK
LSEVNLALYRTYLQPAVKAAVTPPIAEAMRRMHPLRLQYEIFGPSNPLMA
WIEAAAEHARENRKPTAAENPFLALQENMSRQIVDGLEAWRRTVEHLSEE
TFRAVYGAPVLQTALGIDSKSDRPRKPAKSHLHEELVKSRIASLRAEIAQ
GGLREALARALLFVGKARGGADERGFEAIRRLRRAHPTASQLTLPEFKAL
LRKQYFILLIDEEAALSAIPKLLPEDLEERRSGFNALREVLQASGAVTGD
AAERLQRIERLFGLESEAVPFVARKTARERRTS


References
    Title: Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems
    Schmeisser C, Liesegang H, Krysciak D, Bakkou N, Le Quere A, Wollherr A, Heinemeyer I, Morgenstern B, Pommerening-Roser A and Streit WR <8 more author(s)>
    Ref: Applied Environmental Microbiology, 75:4035, 2009 : PubMed

            

    Title: An evolutionary hot spot: the pNGR234b replicon of Rhizobium sp. strain NGR234
    Streit WR, Schmitz RA, Perret X, Staehelin C, Deakin WJ, Raasch C, Liesegang H, Broughton WJ
    Ref: Journal of Bacteriology, 186:535, 2004 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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