Gene_Locus Report
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Gene_locus Report for: psef5-q4kbs6

Pseudomonas protegens (strain Pf-5 / ATCC BAA-477) polyurethanase A PUEA and secreted hemolysin-type RTX family calcium-binding bacteriocin

Comment
Other strains: Pseudomonas protegens Pf-5


Relationship
Family|Bacterial_lip_FamI.3
Block| L
Position in NCBI Life Tree|Pseudomonas fluorescens
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Pseudomonadales: N E > Pseudomonadaceae: N E > Pseudomonas: N E > Pseudomonas fluorescens group: N E > Pseudomonas fluorescens: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acide identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





1 substrate:
Polyurethane
No inhibitor
2 Genbank : CP000076, AAY92471
1 UniProt : Q4KBS6
1 UniProt : Q4KBS6
1 Interpro : Q4KBS6
1 Pfam : Q4KBS6
1 PIRSF : Q4KBS6
1 SUPERFAM : Q4KBS6
Sequence
Peptide
Graphical view for this peptide sequence: psef5-q4kbs6
Colored MSA for Bacterial_lip_FamI.3 (raw) 
MGVFDYKNFTASDSKALFSDALAITLYSYHNIDNGFAEGYQHNGFGLGLP
ATLVTALIGSGNSQGVIPGIPWNPDSEKAALDALHQAGWSTISAQQLGYD
GKVDGRGTFFGEKAGYGTAQVEILGKYDAQGHLESIGIAFRGTSGPRESV
ISDTIGDVINDLLAALGPKDYAKNYAGEAFGKLLGDVAAFAQANGLSGKD
VLVSGHSLGGLGVNSLADLSSERWSGFYKDSNYIAYASPTQSASDKVLNI
GYENDPVFRVLDGSTFKLSSLGVHDAHQDSATNNIVNFNDHYASTLWNVL
PFSILNIPTWLSHLPTGYGDGLTRVLESKFYDFTSKDSTIVVANLSDPAR
ASTWVQDLNRNAETHKGSTFIIGSDGNDLIQGGSGNDYLEGRAGNDTFRD
SGGYNIILGGQGSNTLDLQQSVKNYSFASDGAGTLYLRDANGGISMTRDI
GAIQSKEPGFLWGLFKDDVIHQVTDQGLKAGGQLTQYASSVRGDAGDNVL
KAHAGGDWLFGLDGNDHLIGGQGNDVFVGGAGNDLMEAGGGNNTFLFTGH
FGQDRILGYQGGDKLVFMGVSGVLPDQDYRAHASSSGNDTVLTFGQDSVT
LVGVSLEHLNGSGIVLA
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA
MGVFDYKNFTASDSKALFSDALAITLYSYHNIDNGFAEGYQHNGFGLGLP
ATLVTALIGSGNSQGVIPGIPWNPDSEKAALDALHQAGWSTISAQQLGYD
GKVDGRGTFFGEKAGYGTAQVEILGKYDAQGHLESIGIAFRGTSGPRESV
ISDTIGDVINDLLAALGPKDYAKNYAGEAFGKLLGDVAAFAQANGLSGKD
VLVSGHSLGGLGVNSLADLSSERWSGFYKDSNYIAYASPTQSASDKVLNI
GYENDPVFRVLDGSTFKLSSLGVHDAHQDSATNNIVNFNDHYASTLWNVL
PFSILNIPTWLSHLPTGYGDGLTRVLESKFYDFTSKDSTIVVANLSDPAR
ASTWVQDLNRNAETHKGSTFIIGSDGNDLIQGGSGNDYLEGRAGNDTFRD
SGGYNIILGGQGSNTLDLQQSVKNYSFASDGAGTLYLRDANGGISMTRDI
GAIQSKEPGFLWGLFKDDVIHQVTDQGLKAGGQLTQYASSVRGDAGDNVL
KAHAGGDWLFGLDGNDHLIGGQGNDVFVGGAGNDLMEAGGGNNTFLFTGH
FGQDRILGYQGGDKLVFMGVSGVLPDQDYRAHASSSGNDTVLTFGQDSVT
LVGVSLEHLNGSGIVLA

References
    Title: Carbon Catabolite Repression and Impranil Polyurethane Degradation in Pseudomonas protegens Strain Pf-5
    Hung CS, Zingarelli S, Nadeau LJ, Biffinger JC, Drake CA, Crouch AL, Barlow DE, Russell JN, Jr., Crookes-Goodson WJ
    Ref: Applied Environmental Microbiology, 82:6080, 2016 : PubMed

            

    Title: Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5
    Paulsen IT, Press CM, Ravel J, Kobayashi DY, Myers GS, Mavrodi DV, DeBoy RT, Seshadri R, Ren Q and Loper JE <19 more author(s)>
    Ref: Nat Biotechnol, 23:873, 2005 : PubMed

            


Other Papers

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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