(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) > cellular organisms: NE > Bacteria: NE > Terrabacteria group: NE > Firmicutes: NE > Bacilli: NE > Lactobacillales: NE > Leuconostocaceae: NE > Oenococcus: NE > Oenococcus oeni: NE
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can retrieve all strain data
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) Oenococcus oeni PSU-1: N, E.
Oenococcus oeni ATCC BAA-1163: N, E.
Oenococcus oeni AWRIB429: N, E.
LegendThis sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA MKHKTKILHLKNGYDLWGASFGDPNSPIKILALHGGPGDDADEFIVWADQ LKKFARIDAEVFVYEQLGSFHSESPDFSKKENVDNYLNYNYYINEVEEVR QLFDLDNFYLAGHSWGGILAYEYMLRSEYRQHLKAGIVFSMNDNIDDYVK QINKELLDMFGEQEFKYMKRIETSGDFSQKHYHQNLIELYKEHLNRDPNY NPDDGMKMMAEDVYHHFQGNNEFVVTGEMKNWNVSSRLPEFDIPVLETVG EFDTMSVESAKRSARKLPRGRFALTENGGHSHAQDHPKEFFEHLGSFIKD VKAGNV
Many bacteria display substantial intra-specific genomic diversity that produces significant phenotypic variation between strains of the same species. Understanding the genetic basis of these strain-specific phenotypes is especially important for industrial microorganisms where these characters match individual strains to specific industrial processes. Oenococcus oeni, a bacterium used during winemaking, is one such industrial species where large numbers of strains show significant differences in commercially important industrial phenotypes. To ascertain the basis of these phenotypic differences, the genomic content of ten wine strains of O. oeni were mapped by array-based comparative genome hybridization (aCGH). These strains comprised a genomically diverse group in which large sections of the reference genome were often absent from individual strains. To place the aCGH results in context, whole genome sequence was obtained for one of these strains and compared with two previously sequenced, unrelated strains. While the three strains shared a core group of conserved ORFs, up to 10% of the coding potential of any one strain was specific to that isolate. The genome of O. oeni is therefore likely to be much larger than that present in any single strain and it is these strain-specific regions that are likely to be responsible for differences in industrial phenotypes.
Lactic acid-producing bacteria are associated with various plant and animal niches and play a key role in the production of fermented foods and beverages. We report nine genome sequences representing the phylogenetic and functional diversity of these bacteria. The small genomes of lactic acid bacteria encode a broad repertoire of transporters for efficient carbon and nitrogen acquisition from the nutritionally rich environments they inhabit and reflect a limited range of biosynthetic capabilities that indicate both prototrophic and auxotrophic strains. Phylogenetic analyses, comparison of gene content across the group, and reconstruction of ancestral gene sets indicate a combination of extensive gene loss and key gene acquisitions via horizontal gene transfer during the coevolution of lactic acid bacteria with their habitats.
Oenococcus oeni (strain BAA-331 / PSU-1) alpha/beta superfamily hydrolase