Gene_locus Report for: mouse-ACOT6 Mus musculus (Mouse)acyl-CoA thioesterase 6 (EC 3.1.2.2). Weakly similar to peroxisomal acyl-coenzyme A thioester hydrolase2
Comment
The mouse ACOT gene cluster comprises six genes with localizations in cytosol (ACOT1), mitochondria (ACOT2), and peroxisomes (ACOT3-6). The corresponding human gene cluster contains only three genes (ACOT1, ACOT2, and ACOT4) coding for full-length thioesterase proteins only ACOT4 is peroxisomal Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Deuterostomia: N E > Chordata: N E > Craniata: N E > Vertebrata: N E > Gnathostomata: N E > Teleostomi: N E > Euteleostomi: N E > Sarcopterygii: N E > Dipnotetrapodomorpha: N E > Tetrapoda: N E > Amniota: N E > Mammalia: N E > Theria: N E > Eutheria: N E > Boreoeutheria: N E > Euarchontoglires: N E > Glires: N E > Rodentia: N E > Myomorpha: N E > Muroidea: N E > Muridae: N E > Murinae: N E > Mus [genus]: N E > Mus [subgenus]: N E > Mus musculus: N E A85-EsteraseD-FGH :
mouse-ES10 Mus musculus esterase 10 .
ABHD6-Lip :
mouse-ABHD6 Mus musculus (Mouse) Monoacylglycerol lipase ABHD6 .
ABHD8 :
mouse-Abhd8 Mus musculus Q9JMF5-Abhd8 (Mouse) epoxide hydrolase (EC 3.3.2.3) .
ABHD10 :
mouse-abhda .
ABHD11-Acetyl_transferase :
mouse-Abhd11 Mus musculus (Mouse) Abhydrolase domain-containing protein 11 Williams-Beuren syndrome chromosomal region 21 protein .
ABHD12-PHARC :
mouse-abd12 Mus musculus (Mouse) abhydrolase domain-containing protein 12 protein c20orf22 CT022 (fragment) ,
mouse-g3uzn6 Mus musculus (Mouse) Protein Abhd12b .
ABHD13-BEM46 :
mouse-Q80UX8 Mus musculus (Mouse) 1110065l07rik protein flj14906 fis Alpha/beta hydrolase domain-containing protein 13 .
ABHD16 :
mouse-Abhd16a Mus musculus (Mouse) Phosphatidylserine lipase ABHD16A, bat5 (hla-b-associated transcript 5) (ng26 protein) ,
mouse-Abhd16b Mus musculus (Mouse) similar to chromosome 20 open reading frame 135 .
ABHD17-depalmitoylase :
mouse-q7m759 Mus musculus (Mouse) cgi67 serine protease precursor ,
mouse-Q8VCV1 Mus musculus (Mouse) hypothetical protein ,
mouse-Q99JW1 Mus musculus (Mouse) similar to cgi-67 protein AB17A .
ABHD18 :
mouse-Q8C1A9 Mus musculus (Mouse)3110057O12RIK Hypothetical alpha/beta-Hydrolases/putative DNA-binding domain .
abh_upf0017 :
mouse-ABH15 Mus musculus (Mouse) alpha/beta-hydrolases domain-containing protein 15 ,
mouse-abhd1 Mus musculus (Mouse) lung alpha/beta hydrolase 1 (Labh1-pending) ,
mouse-abhd3 Mus musculus (Mouse) lung alpha/beta hydrolase fold protein 3 ,
mouse-ABHD2 Mus musculus (Mouse) alpha/beta hydrolase-2 fold protein 2210009N18RIK .
ACHE :
mouse-ACHE .
Acidic_Lipase :
mouse-1lipg Mus musculus (Mouse) (EC 3.1.1.3) (Gastric lipase) (GL) 2310051b21rik protein ,
mouse-1llip Mus musculus (C57 Black/6X CBA) LAL mRNA for lysosomal acid lipase ,
mouse-LIPK Mus musculus (Mouse) LIPK Lipl2 weakly similar to triacylglycerol lipase ,
mouse-LIPM Mus musculus (Mouse) LIPM Lipm Lipl3 riken cdna 4632427c23 gene ,
mouse-LIPN Mus musculus (Mouse) lipase-like, ab-hydrolase domain containing 3 (fragment) ,
mouse-Lipo1 Mus musculus (Mouse) lipase, gastric (EC 3.1.1.3) (gastric lipase) (gl) ,
mouse-Lipo2 Mus musculus (Mouse) Lipo2 Lipase ,
mouse-Lipo4 Mus musculus (Mouse) Lipo4 Lipase .
ACPH_Peptidase_S9 :
mouse-apeh Mus musculus (Mouse) hydrolase) (aph) (acylaminoacyl-peptidase) .
Acyl-CoA_Thioesterase :
mouse-acnt1 Mus musculus (Mouse) Acyl-coenzyme A amino acid N-acyltransferase 1 ,
mouse-acot1 Mus musculus (Mouse) hydrolase) ACOT1 (cte-I) cytosolic long chain Acyl-CoA thioesterase ,
mouse-acot2 Mus musculus (Mouse) (EC 3.1.2.2) very-long-chain Acyl-CoA thioesterase (MTE-I) ACOT2 ,
mouse-acot3 Mus musculus (Mouse) (peroxisomal long-chain Acyl-CoA thioesterase 2) (pte-IA) (EC 3.1.2.2) ,
mouse-acot4 Mus musculus (Mouse) peroxisomal long chain Acyl-CoA thioesterase Ib (pte-Ib) (pte-2b) ,
mouse-acot5 Mus musculus (Mouse) (peroxisomal cytosolic Acyl-CoA thioesterase Ic) ,
mouse-BAAT Mus musculus (Mouse) bile acid CoA: amino acid n-acyltransferase (EC 3.1.2.2) ,
mouse-Q8BGG9 Mus musculus (Mouse) Similar to bile acid coenzyme A: amino acid N-acyltransferase .
Arb2_FAM172A :
mouse-f172a Mus musculus (Mouse). Cotranscriptional regulator FAM172A .
Arylacetamide_deacetylase :
mouse-adcl3 Mus musculus (Mouse) Arylacetamide deacetylase-like 3 ,
mouse-adcl4 Mus musculus (Mouse) Arylacetamide deacetylase-like 4 Hypothetical esterase/lipase/thioesterase family active site containing protein ,
mouse-aryla Mus musculus (Mouse) arylacetamide deacetylase and 5033417e09rik protein ,
mouse-Q8BLF1 Mus musculus (Mouse) KIAA1363 NCEH1 neutral cholesterol ester hydrolase 1 B230106I24RIK ,
mouse-b1avu7 Mus musculus (Mouse). Uncharacterized protein ,
mouse-b2rwd2 Mus musculus (Mouse). Arylacetamide deacetylase-like 2 ,
mouse-j3qpi0 Mus musculus (Mouse). Uncharacterized protein ,
mouse-w4vsp6 Mus musculus (Mouse). MCG67716 .
BCHE :
mouse-BCHE Mus musculus mRNA for butyrylcholinesterase .
Carboxypeptidase_S10 :
mouse-CPMac Mus musculus RIKEN 4933436L16RIK CPMac ,
mouse-Ppgb ,
mouse-RISC Mus musculus RISC retinoid-inducible serine carboxypeptidase HSCP1 (serine carboxypeptidase 1) .
Carb_B_Chordata :
mouse-cauxin Mus musculus (Mouse) est5a (Ces5a) est7 (Ces7) carboxylesterase-like urinary excreted protein ,
mouse-Ces1a Mus musculus Ces1a LOC2445 Q5FWH4 ,
mouse-Ces1b Mus musculus (Mouse) Putative uncharacterized protein Gm5158 ,
mouse-Ces1c Mus musculus mRNA for carboxylesterase, Ces1c lung surfactant convertase, Liver carboxylesterase N, PES-N clone MGC:18575 ,
mouse-Ces1d Mus musculus (Mouse) triacylglycerol hydrolase (tgh) Fatty acid ethyl ester synthase Carboxylesterase 3 (EC 3.1.1.1) ,
mouse-Ces1e Mus musculus esterase-22 (egasyn) Es-22 E.R.-targeting prot. of beta-glucuronidase ,
mouse-Ces1f Mus musculus (Mouse) carboxylesterase ML1, CESmML1 61.6 kda protein ES-4 (EC 3.1.1.1) ,
mouse-Ces1g Mus musculus Ces1g EST1 RIKEN 2cxes mRNA for carboxylesterase ,
mouse-Ces1h Mus musculus Ces1h RIKEN cDNA 2310039D24 gene (2310039D24Rik),XP_134476 ,
mouse-Ces2a Mus musculus (Mouse) Protein Ces2a Ces6 carboxylesterase 6 (Intestine, liver) AI266984 ,
mouse-Ces2b Mus musculus (Mouse) Ces2b hypothetical protein bc015286 ,
mouse-Ces2c ,
mouse-Ces2d-ps Mus musculus (Mouse) Ces2d-ps carboxylesterase 2D, pseudogene ,
mouse-Ces2e Mus musculus Ces2e Ces5 carboxylesterase, Pyrethroid hydrolase ,
mouse-Ces2f Mus musculus (Mouse) Ces2f Uncharacterized protein ,
mouse-Ces2g Mus musculus (Mouse) hypothetical 62.7 kda protein ,
mouse-Ces2h Mus musculus Ces2h carboxylesterase 2 isoform 1 ,
mouse-Ces3a Mus musculus Ces3a liver carboxylesterase esterase 31 Es31 ,
mouse-Ces3b Mus musculus (Mouse) Liver carboxylesterase 31-like, Es31L ,
mouse-Ces4a Mus musculus (Mouse) Carboxylesterase 4A (Ces4a) Carboxylesterase 8 (Ces8) pI 6.1 esterase (ES-10) ES-HVEL .
CGI-58_ABHD5_ABHD4 :
mouse-abhd4 Mus musculus (Mouse) abhydrolase domain-containing protein 4 similar to hypothetical protein flj12816 ,
mouse-abhd5 Mus musculus (Mouse) cgi-58 RIKEN AK004873 gene .
Cholesterol_esterase :
mouse-pches Mus musculus pancreatic/mammary gland cholesterol esterase .
CIB-CCG1-interacting-factor-B :
mouse-c1ib Mus musculus (Mouse) ccg1-interacting factor b ,
mouse-Dorz1 Mus musculus (Mouse)1110013B16RIK Dorz1 similar to dkfzp564o243 protein .
CMBL :
mouse-CMBL Mus musculus (Mouse) Carboxymethylenebutenolidase homolog .
DPP4N_Peptidase_S9 :
mouse-dpp4 M.musculus mRNA for dipeptidyl peptidase IV ,
mouse-DPP6 Mus musculus (Mouse) dipeptidyl aminopeptidase-like protein 6 (fragment) ,
mouse-dpp8 Mus musculus RIKEN dpp8 ,
mouse-dpp9 Mus musculus (Mouse) dipeptidyl peptidase 9 homolog mflj00334 protein ,
mouse-dpp10 Mus musculus DPP-10 Dipeptidyl peptidase IV-related protein RIKEN cDNA 6430601K09 gene (6430601K09Rik), mRNA ,
mouse-FAP Mus musculus (Mouse) fibroblast activation protein .
Duf_676 :
mouse-F135A Mus musculus (Mouse) hypothetical Esterase/lipase/thioesterase family active site containing protein ,
mouse-Q9DAI6 Mus musculus (Mouse) family active site containing protein, similarity 135, member B .
Duf_726 :
mouse-tmco4 Mus musculus (Mouse) Transmembrane and coiled-coil domain-containing protein 4 .
Duf_829 :
mouse-tmm53 Mus musculus (Mouse) Transmembrane protein 53 .
Epoxide_hydrolase :
mouse-EPHX1 Mus musculus (Mouse) epoxide hydrolase mEH (EC 3.3.2.3) ,
mouse-ephx3 Mus musculus (Mouse) Abhd9 ephx3 Epoxide_hydrolase sequence ,
mouse-ephx4 Mus musculus (Mouse) epoxide hydrolase-related protein ,
mouse-hyes .
FSH1 :
mouse-OVCA2 Mus musculus (Mouse) 2310011m22rik protein (ovca2) .
Hepatic_Lipase :
mouse-1hlip Mus musculus (Mouse), Mus spretus (Western Mediterranean mouse) (Algerian mouse) hepatic triacylglycerol lipase .
Hormone-sensitive_lipase_like :
mouse-hslip Mus musculus mRNA for hormone sensitive lipase .
Hydrolase_RBBP9_YdeN :
mouse-rbbp9 Mus musculus (Mouse), Mus spretus (Western Mediterranean mouse), (Retinoblastoma-binding protein 9 protein) B5T overexpressed gene protein (bog protein) .
Kynurenine-formamidase :
mouse-KFA Mus musculus Kynurenine formamidase (EC 3.5.1.9) Afmid Ammd cDNA 9030621K19 gene (9030621K19Rik) .
LIDHydrolase :
mouse-Ldah Mus musculus (Mouse) lipid droplet-associated hydrolase (LDAH) C2orf43 CB043 UPF0554 .
Lipase_3 :
mouse-DGLB Mus musculus (Mouse) Daglb Sn1-specific diacylglycerol lipase beta 64.9 kda protein ,
mouse-q6wqj1 Mus musculus (Mouse) Dagla neural stem cell-derived dendrite regulator DAGLA .
Lipoprotein_Lipase :
mouse-Lipg Mus musculus (Mouse) Lipg endothelial lipase ,
mouse-lipli Mus musculus lipoprotein lipase .
LYsophospholipase_carboxylesterase :
mouse-lypl1 Mus musculus (Mouse) lysophospholipase-like protein 1 (EC 3.1.2.-) 26.3 kda protein ,
mouse-lypla1 Mus musculus lysophospholipase 1 (Lypla1)(lysopla I), mRNA ,
mouse-lypla2 Mus musculus lysophospholipase 2 (Lypla2), mRNA .
Maspardin-ACP33-SPG21_like :
mouse-SPG21 Mus musculus (Mouse) hypothetical Maspardin-ACP33-SPG21 Spg21 Spastic paraplegia 21 homolog (Human) .
MEST-like :
mouse-MEST Mus musculus Mouse and Mus musculus molossinus (Japanese house mouse) Mesoderm-specific transcript protein .
Monoglyceridelipase_lysophospholip :
mouse-MGLL Mus musculus (Mouse) monoglyceride lipase (EC 3.1.1.23) .
Ndr_family :
mouse-ndr1 Mus musculus (Mouse) ndr1 ,
mouse-ndr2 ,
mouse-ndr3 Mus musculus (Mouse) ndrg3 protein (ndr3 protein) ,
mouse-ndr4 Mus musculus (Mouse) NDRG4 ndrg4 protein mkiaa1180 .
Neuroligin :
mouse-1neur ,
mouse-2neur ,
mouse-3neur ,
mouse-4neur Mus musculus (Mouse) neuroligin 4 .
NLS3-Tex30 :
mouse-Kansl3 Mus musculus (Mouse) Q8C0P9 4632411B12RIK serum inhibited-related protein homolog ,
mouse-Tex30 Mus musculus (Mouse) Tex30 Testis-expressed sequence 30 protein, C13orf27 homolog .
PAF-Acetylhydrolase :
mouse-paf2 Mus musculus (Mouse) similar to platelet-activating factor acetylhydrolase 2 (40 kda) ,
mouse-pafa Mus musculus plasma PAF acetylhydrolase .
Palmitoyl-protein_thioesterase :
mouse-ppt Mus musculus (Mouse) palmitoyl-protein thioesterase ,
mouse-PPT2 Mus musculus (Mouse) palmitoyl-protein thioesterase 2 .
Pancreatic_lipase :
mouse-1plip Mus musculus RIKEN Pancreatic lipase ,
mouse-1plrp Mus musculus (Mouse) pancreatic lipase related protein 1 ,
mouse-LIPR2 Mus musculus mRNA for cytotoxic T lymphocyte lipase .
PC-sterol_acyltransferase :
mouse-C87498 Mus musculus (Mouse) similar to LCAT-like lysophospholipase (llpl) ,
mouse-lcat Mus musculus mRNA for phosphatidylcholine-sterol acyltransferase ( lecithin: cholesterol acyltransferase) .
Pectinacetylesterase-Notum :
mouse-notum Mus musculus (Mouse) Protein notum homolog .
PGAP1 :
mouse-q3uuq7 Mus musculus (Mouse) gpi deacylase full insert sequence. (fragment) ,
mouse-srac1 Mus musculus (Mouse) Protein SERAC1 .
Phospholipase :
mouse-LIPH Mus musculus (Mouse) similar to lacrimal lipase ,
mouse-psplip Mus musculus Similar to phosphatidylserine-specific phospholipase A1alpha ,
mouse-f6yqt7 Mus musculus (Mouse). Lipase, member I .
PPase_methylesterase_euk :
mouse-PPME1 Mus musculus (Mouse) similar to protein phosphatase methylesterase-1 .
Prolylcarboxypeptidase :
mouse-dpp2 Mus musculus (Mouse) Dipeptidyl aminopeptidase II Dipeptidyl peptidase 7 ,
mouse-pcp Mus musculus (Mouse) prcp protein 2510048k03rik protein prolylcarboxypeptidase ,
mouse-tssp Mus musculus (Mouse) thymus-specific serine protease precursor (EC 3.4.-.-) ottmusp00000000643 .
S9N_PPCE_Peptidase_S9 :
mouse-ppce Mus musculus (Mouse) (PE) prolyl endopeptidase POP PREP .
S9N_PREPL_Peptidase_S9 :
mouse-Q8C167 Mus musculus (Mouse) PERLP unknown (protein for mgc:7980) mkiaa0436 .
SERHL :
mouse-SERHL Mus musculus (Mouse) serine hydrolase-like protein 0610008b10rik protein and isoforms shl-2 (1110019m09rik protein) .
Thioesterase :
mouse-AI607300 Mus musculus (Mouse) hydrolase (mch) SAST ,
mouse-FASN Mus musculus (Mouse) fatty acid synthase FAS oleoyl-[acyl-carrier-protein] hydrolase (EC 3.1.2.14) Thioesterase domain .
Thyroglobulin :
mouse-thyro Mus musculus thyroglobulin cDNA .
Valacyclovir-hydrolase :
mouse-bphl Mus musculus (Mouse) biphenyl hydrolase-like, breast epithelial mucin-assoc AG BPHL (mcnaa), Valacyclovir hydrolase 2010012d11 rik protein Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can
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(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) Mus musculus molossinus:
N ,
E .
Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: mouse-ACOT6 Colored MSA for Acyl-CoA_Thioesterase (raw)
MAATLSVEPAGRSCWDEPLSIAVRGLAPEQPVTLRSVLRDEKGMLFRAHA
RYRADSHGELDLARTPALGGSFSGLEPMGLLWAMEPDRPFWRLIKRDVQI
PFVVELEVLDGHEPDGGQRLARAVHERHFMAPGVRRVPVREGRVRATLFL
PPGKGQFPGIIDLYGSIGGLCEHRASLLAGHGFAVLALAYFQFEDLPENL
SDVRLEYFEEALALMLRHPQVKGPNIGLIGVSKGADLCLSMAAFLKDNIT
ATVLINACVANTLVPLYYKDLFVPELGCDQTKNKSGLMDLRDMWNNPLEE
PNHQSLIPLEKAQGPFLFLVGMDDHNWKSDVYARIACERLQAHGKDRPQI
IYYPETGHCIEPPYFPPPIATVHFVLGEAVFNGGKPRAQSRAQLDAWQRI
QTFFQKYLNGEKPARHSKL
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M A A T L S V E P A G R S C W D E P L S I A V R G L A P E Q P V T L R S V L R D E K G M L F R A H A R Y R A D S H G E L D L A R T P A L G G S F S G L E P M G L L W A M E P D R P F W R L I K R D V Q I P F V V E L E V L D G H E P D G G Q R L A R A V H E R H F M A P G V R R V P V R E G R V R A T L F L P P G K G Q F P G I I D L Y G S I G G L C E H R A S L L A G H G F A V L A L A Y F Q F E D L P E N L S D V R L E Y F E E A L A L M L R H P Q V K G P N I G L I G V S K G A D L C L S M A A F L K D N I T A T V L I N A C V A N T L V P L Y Y K D L F V P E L G C D Q T K N K S G L M D L R D M W N N P L E E P N H Q S L I P L E K A Q G P F L F L V G M D D H N W K S D V Y A R I A C E R L Q A H G K D R P Q I I Y Y P E T G H C I E P P Y F P P P I A T V H F V L G E A V F N G G K P R A Q S R A Q L D A W Q R I Q T F F Q K Y L N G E K P A R H S K L
References
Title: Analysis of the mouse and human acyl-CoA thioesterase (ACOT) gene clusters shows that convergent, functional evolution results in a reduced number of human peroxisomal ACOTsHunt MC , Rautanen A , Westin MA , Svensson LT , Alexson SE Ref: FASEB Journal, 20 :1855, 2006 : PubMed Abstract ESTHER: Hunt_2006_FASEB.J_20_1855 PubMedSearch: Hunt 2006 FASEB.J 20 1855 PubMedID: 16940157 Gene_locus related to this paper: human-ACOT1 ,
human-ACOT2 ,
human-ACOT4 ,
human-ACOT6 ,
mouse-acot1 ,
mouse-acot2 ,
mouse-acot3 ,
mouse-acot4 ,
mouse-acot5 ,
mouse-ACOT6 Abstract
The maintenance of cellular levels of free fatty acids and acyl-CoAs, the activated form of free fatty acids, is extremely important, as imbalances in lipid metabolism have serious consequences for human health. Acyl-coenzyme A (CoA) thioesterases (ACOTs) hydrolyze acyl-CoAs to the free fatty acid and CoASH, and thereby have the potential to regulate intracellular levels of these compounds. We previously identified and characterized a mouse ACOT gene cluster comprised of six genes that apparently arose by gene duplications encoding acyl-CoA thioesterases with localizations in cytosol (ACOT1), mitochondria (ACOT2), and peroxisomes (ACOT3-6). However, the corresponding human gene cluster contains only three genes (ACOT1, ACOT2, and ACOT4) coding for full-length thioesterase proteins, of which only one is peroxisomal (ACOT4). We therefore set out to characterize the human genes, and we show here that the human ACOT4 protein catalyzes the activities of three mouse peroxisomal ACOTs (ACOT3, 4, and 5), being active on succinyl-CoA and medium to long chain acyl-CoAs, while ACOT1 and ACOT2 carry out similar functions to the corresponding mouse genes. These data strongly suggest that the human ACOT4 gene has acquired the functions of three mouse genes by a functional convergent evolution that also provides an explanation for the unexpectedly low number of human genes.
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAsOkazaki Y , Furuno M , Kasukawa T , Adachi J , Bono H , Kondo S , Nikaido I , Osato N , Saito R and Hayashizaki Y <127 more author(s)> Okazaki Y , Furuno M , Kasukawa T , Adachi J , Bono H , Kondo S , Nikaido I , Osato N , Saito R , Suzuki H , Yamanaka I , Kiyosawa H , Yagi K , Tomaru Y , Hasegawa Y , Nogami A , Schonbach C , Gojobori T , Baldarelli R , Hill DP , Bult C , Hume DA , Quackenbush J , Schriml LM , Kanapin A , Matsuda H , Batalov S , Beisel KW , Blake JA , Bradt D , Brusic V , Chothia C , Corbani LE , Cousins S , Dalla E , Dragani TA , Fletcher CF , Forrest A , Frazer KS , Gaasterland T , Gariboldi M , Gissi C , Godzik A , Gough J , Grimmond S , Gustincich S , Hirokawa N , Jackson IJ , Jarvis ED , Kanai A , Kawaji H , Kawasawa Y , Kedzierski RM , King BL , Konagaya A , Kurochkin IV , Lee Y , Lenhard B , Lyons PA , Maglott DR , Maltais L , Marchionni L , McKenzie L , Miki H , Nagashima T , Numata K , Okido T , Pavan WJ , Pertea G , Pesole G , Petrovsky N , Pillai R , Pontius JU , Qi D , Ramachandran S , Ravasi T , Reed JC , Reed DJ , Reid J , Ring BZ , Ringwald M , Sandelin A , Schneider C , Semple CA , Setou M , Shimada K , Sultana R , Takenaka Y , Taylor MS , Teasdale RD , Tomita M , Verardo R , Wagner L , Wahlestedt C , Wang Y , Watanabe Y , Wells C , Wilming LG , Wynshaw-Boris A , Yanagisawa M , Yang I , Yang L , Yuan Z , Zavolan M , Zhu Y , Zimmer A , Carninci P , Hayatsu N , Hirozane-Kishikawa T , Konno H , Nakamura M , Sakazume N , Sato K , Shiraki T , Waki K , Kawai J , Aizawa K , Arakawa T , Fukuda S , Hara A , Hashizume W , Imotani K , Ishii Y , Itoh M , Kagawa I , Miyazaki A , Sakai K , Sasaki D , Shibata K , Shinagawa A , Yasunishi A , Yoshino M , Waterston R , Lander ES , Rogers J , Birney E , Hayashizaki Y (- 127) Ref: Nature, 420 :563, 2002 : PubMed Abstract ESTHER: Okazaki_2002_Nature_420_563 PubMedSearch: Okazaki 2002 Nature 420 563 PubMedID: 12466851 Gene_locus related to this paper: mouse-1lipg ,
mouse-1llip ,
mouse-1plrp ,
mouse-3neur ,
mouse-ABH15 ,
mouse-abhd4 ,
mouse-abhd5 ,
mouse-Abhd8 ,
mouse-Abhd11 ,
mouse-abhda ,
mouse-acot4 ,
mouse-adcl4 ,
mouse-AI607300 ,
mouse-BAAT ,
mouse-bphl ,
mouse-C87498 ,
mouse-Ldah ,
mouse-Ces1d ,
mouse-Ces2e ,
mouse-CMBL ,
mouse-DGLB ,
mouse-dpp9 ,
mouse-ES10 ,
mouse-F135A ,
mouse-FASN ,
mouse-hslip ,
mouse-hyes ,
mouse-Kansl3 ,
mouse-LIPH ,
mouse-LIPK ,
mouse-lipli ,
mouse-LIPM ,
mouse-lypla1 ,
mouse-lypla2 ,
mouse-MEST ,
mouse-MGLL ,
mouse-ndr4 ,
mouse-OVCA2 ,
mouse-pafa ,
mouse-pcp ,
mouse-ppce ,
mouse-Ppgb ,
mouse-PPME1 ,
mouse-q3uuq7 ,
mouse-Q8BLF1 ,
mouse-ACOT6 ,
mouse-Q8C1A9 ,
mouse-Q9DAI6 ,
mouse-Q80UX8 ,
mouse-Q8BGG9 ,
mouse-Q8C167 ,
mouse-rbbp9 ,
mouse-SERHL ,
mouse-tssp Abstract
Only a small proportion of the mouse genome is transcribed into mature messenger RNA transcripts. There is an international collaborative effort to identify all full-length mRNA transcripts from the mouse, and to ensure that each is represented in a physical collection of clones. Here we report the manual annotation of 60,770 full-length mouse complementary DNA sequences. These are clustered into 33,409 'transcriptional units', contributing 90.1% of a newly established mouse transcriptome database. Of these transcriptional units, 4,258 are new protein-coding and 11,665 are new non-coding messages, indicating that non-coding RNA is a major component of the transcriptome. 41% of all transcriptional units showed evidence of alternative splicing. In protein-coding transcripts, 79% of splice variations altered the protein product. Whole-transcriptome analyses resulted in the identification of 2,431 sense-antisense pairs. The present work, completely supported by physical clones, provides the most comprehensive survey of a mammalian transcriptome so far, and is a valuable resource for functional genomics.
Other Papers
Mus musculus (Mouse) Abhydrolase domain-containing protein 10, mitochondrial