Gene_locus Report for: leumm-q03y60

(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Firmicutes: N E > Bacilli: N E > Lactobacillales: N E > Leuconostocaceae: N E > Leuconostoc: N E > Leuconostoc mesenteroides: N E > Leuconostoc mesenteroides subsp. mesenteroides: N E

Title: Complete genome sequence of Leuconostoc mesenteroides subsp. mesenteroides strain J18, isolated from kimchi
Jung JY, Lee SH, Jeon CO
Ref: Journal of Bacteriology, 194:730, 2012 : PubMed
Abstract


ESTHER: Jung_2012_J.Bacteriol_194_730
PubMedSearch: Jung 2012 J.Bacteriol 194 730
PubMedID: 22247530
Gene_locus related to this paper: leumm-q03y60, leume-a0a0n1s1e2

Abstract

Leuconostoc mesenteroides subsp. mesenteroides is one of the most predominant lactic acid bacterial groups during kimchi fermentation. Here, we report the complete genome sequence of L. mesenteroides subsp. mesenteroides J18, which was isolated from kimchi. The genome of the strain consists of a 1,896,561-bp chromosome and five plasmids.



        

Title: Comparative genomics of the lactic acid bacteria
Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V and Mills D <40 more author(s)> Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, Huang K, Goodstein DM, Hawkins T, Plengvidhya V, Welker D, Hughes J, Goh Y, Benson A, Baldwin K, Lee JH, Diaz-Muniz I, Dosti B, Smeianov V, Wechter W, Barabote R, Lorca G, Altermann E, Barrangou R, Ganesan B, Xie Y, Rawsthorne H, Tamir D, Parker C, Breidt F, Broadbent J, Hutkins R, O'Sullivan D, Steele J, Unlu G, Saier M, Klaenhammer T, Richardson P, Kozyavkin S, Weimer B, Mills D (- 40)
Ref: Proc Natl Acad Sci U S A, 103:15611, 2006 : PubMed
Abstract


ESTHER: Makarova_2006_Proc.Natl.Acad.Sci.U.S.A_103_15611
PubMedSearch: Makarova 2006 Proc.Natl.Acad.Sci.U.S.A 103 15611
PubMedID: 17030793
Gene_locus related to this paper: 9laco-c0xef2, lacba-pepx, lacba-q03pm4, lacba-q03sl1, lacc3-pepx, lacc3-q03b36, lacc3-q033u9, lacc3-q035l1, lacc3-q036j3, lacc3-q036j8, laccb-b3wcx2, lacda-q1g8l1, lacdb-q04b33, lacdb-q04bn2, lacdb-q04ci8, lacdb-q04cw3, lacdl-pepx, lacdl-pip, lacga-q040j4, lacga-q040j9, lacga-q040s2, lacga-q042h9, lacga-q043a3, lacga-q043m1, lacga-q045l3, lacga-q046w1, lacga-q047a5, lacjo-q74hh0, lacjo-q74ii3, lacla-pepx, laclk-d2bl62, lacls-q02y15, lacls-q030e4, lacls-q030p2, lacrh-pepr, leumc-c2kjv5, leumm-q03x93, leumm-q03y60, leumm-q03y71, leumm-q03z72, oenob-q04d10, oenob-q04f06, oenob-q04f19, oenob-q04fw8, oenob-q04ga3, oenob-q04h47, oenoe-a0nif9, oenoe-a0nl98, oenoe-d3lb54, pedpa-pepx, pedpa-q03gh4, pedpa-q03h47, pedpa-q03hj2, strt1-q5lz16, strt1-q5lza1, strt2-q5m420, strtr-pepx, oenoe-k6pl10, lacba-pip, lacca-k0n1x0, lacpa-s2ter8, lacpa-s2rz88, pedpa-q03hz6, oenob-q04dp7

Abstract

Lactic acid-producing bacteria are associated with various plant and animal niches and play a key role in the production of fermented foods and beverages. We report nine genome sequences representing the phylogenetic and functional diversity of these bacteria. The small genomes of lactic acid bacteria encode a broad repertoire of transporters for efficient carbon and nitrogen acquisition from the nutritionally rich environments they inhabit and reflect a limited range of biosynthetic capabilities that indicate both prototrophic and auxotrophic strains. Phylogenetic analyses, comparison of gene content across the group, and reconstruction of ancestral gene sets indicate a combination of extensive gene loss and key gene acquisitions via horizontal gene transfer during the coevolution of lactic acid bacteria with their habitats.