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Gene_locus Report for: lepmc-q6q891

Leptosphaeria maculans (Blackleg fungus) pks1

Comment
Other strains: Leptosphaeria maculans (strain JN3 / isolate v23.1.3 / race Av1-4-5-6-7-8) (Blackleg fungus) (Phoma lingam)


Relationship
Family|Thioesterase
Block| X
Position in NCBI Life Tree|Leptosphaeria maculans
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Fungi: N E > Dikarya: N E > Ascomycota: N E > saccharomyceta: N E > Pezizomycotina: N E > leotiomyceta: N E > dothideomyceta: N E > Dothideomycetes: N E > Pleosporomycetidae: N E > Pleosporales: N E > Pleosporineae: N E > Leptosphaeriaceae: N E > Leptosphaeria: N E > Leptosphaeria maculans species complex: N E > Leptosphaeria maculans: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : AY553235
2 UniProt : Q6Q891, E5A5Q5
2 UniProt : Q6Q891, E5A5Q5
2 Interpro : Q6Q891, E5A5Q5
2 Pfam : Q6Q891, E5A5Q5
2 PIRSF : Q6Q891, E5A5Q5
2 SUPERFAM : Q6Q891, E5A5Q5
Sequence
Graphical view for this peptide sequence: lepmc-q6q891
Colored MSA for Thioesterase (raw)
LKIIAEESGIAVDELTDDTAFADAGVDSLCSLVIGSRLREELNLDLDPDF
SLFDSVATVGDLRTWFKGNVRDAVGDSQAKSSVAAPIESEDSPVELVPFC
RPANSVILQGNPKSARKTLFLLPDGSGTVFSYTTIPKLFSDIALIGLICP
YSRDAENMNCTYGSMMESFVNEIRRRQPVGPYHVGGWSSGGALAFMIAEL
LINQGEEVHSIIVIDAPVPQPMEKLPREFYEYCNSLGLFPQQAGASADSG
APDYLIAHFIAVVDVTMGYRSSPLNTHRMPKLGLIWASDTVLDEATAPKM
KGMHFMVNKRTDFGPDGWDEVLPGGEYDIVVAEGANHFTLMVSNQ
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

LKIIAEESGIAVDELTDDTAFADAGVDSLCSLVIGSRLREELNLDLDPDF
SLFDSVATVGDLRTWFKGNVRDAVGDSQAKSSVAAPIESEDSPVELVPFC
RPANSVILQGNPKSARKTLFLLPDGSGTVFSYTTIPKLFSDIALIGLICP
YSRDAENMNCTYGSMMESFVNEIRRRQPVGPYHVGGWSSGGALAFMIAEL
LINQGEEVHSIIVIDAPVPQPMEKLPREFYEYCNSLGLFPQQAGASADSG
APDYLIAHFIAVVDVTMGYRSSPLNTHRMPKLGLIWASDTVLDEATAPKM
KGMHFMVNKRTDFGPDGWDEVLPGGEYDIVVAEGANHFTLMVSNQ


References
    Title: Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations
    Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, Dominguez V, Anthouard V, Bally P and Howlett BJ <31 more author(s)>
    Ref: Nat Commun, 2:202, 2011 : PubMed

            

    Title: The sirodesmin biosynthetic gene cluster of the plant pathogenic fungus Leptosphaeria maculans
    Gardiner DM, Cozijnsen AJ, Wilson LM, Pedras MS, Howlett BJ
    Ref: Molecular Microbiology, 53:1307, 2004 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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