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Gene_locus Report for: gibin-a0a420svd8

Gibberella intermedia (Bulb rot disease fungus) (Fusarium proliferatum). Uncharacterized protein

Comment
n-term disordered cidic domain excluded. Other strains: Gibberella intermedia (Bulb rot disease fungus) (Fusarium proliferatum) (strain ET1); Fusarium fujikuroi species complex Gibberella intermedia (Bulb rot disease fungus)


Relationship
Family|FaeC
Block| X
Position in NCBI Life Tree|Gibberella intermedia
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Fungi: N E > Dikarya: N E > Ascomycota: N E > saccharomyceta: N E > Pezizomycotina: N E > leotiomyceta: N E > sordariomyceta: N E > Sordariomycetes: N E > Hypocreomycetidae: N E > Hypocreales: N E > Nectriaceae: N E > Fusarium: N E > Fusarium fujikuroi species complex: N E > Fusarium proliferatum: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
Sequence
Graphical view for this peptide sequence: gibin-a0a420svd8
Colored MSA for FaeC (raw)
AVSTAVSSPGSGSSDGCGKQSSLTSGTYSVTVNGRTRSYILDVPKSYNSS
KGYKLIFGLHWRGGTMEDVATGQTVEAGVWNYYGLKRLAEDSAIFVAPQG
IDNGWGNSNGDDVKFIDAIMEHVEADLCVDQSQRFATGFSFGGAMTYSLA
CSRADKLRAVAVLSGAQLSGCEGGNDPVPYLGIHGVDDGILSISIGHSLR
DKFVLNNGCQAQSAPEPSSGSLTHTKTTYTCNSGYPVTWIAFDGGHIASP
QAGATTDSGLRTWAPGETWEFFSQFS
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

AVSTAVSSPGSGSSDGCGKQSSLTSGTYSVTVNGRTRSYILDVPKSYNSS
KGYKLIFGLHWRGGTMEDVATGQTVEAGVWNYYGLKRLAEDSAIFVAPQG
IDNGWGNSNGDDVKFIDAIMEHVEADLCVDQSQRFATGFSFGGAMTYSLA
CSRADKLRAVAVLSGAQLSGCEGGNDPVPYLGIHGVDDGILSISIGHSLR
DKFVLNNGCQAQSAPEPSSGSLTHTKTTYTCNSGYPVTWIAFDGGHIASP
QAGATTDSGLRTWAPGETWEFFSQFS


Reference
    Title: Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae
    Armitage AD, Taylor A, Sobczyk MK, Baxter L, Greenfield BPJ, Bates HJ, Wilson F, Jackson AC, Ott S and Clarkson JP <1 more author(s)>
    Ref: Sci Rep, 8:13530, 2018 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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