Gene_locus Report for: emeni-q5b938

(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Fungi: N E > Dikarya: N E > Ascomycota: N E > saccharomyceta: N E > Pezizomycotina: N E > leotiomyceta: N E > Eurotiomycetes: N E > Eurotiomycetidae: N E > Eurotiales: N E > Aspergillaceae: N E > Aspergillus: N E > Aspergillus nidulans: N E

6_AlphaBeta_hydrolase : emeni-q5ax50Emericella nidulans (Aspergillus nidulans) Aspergillus nidulans FGSC A4 Putative uncharacterized protein, emeni-q5b5j7Emericella nidulans (Aspergillus nidulans) Putative uncharacterized protein, emeni-q5ba78Emericella nidulans (Aspergillus nidulans) Aspergillus nidulans FGSC A4 Putative uncharacterized protein.
A85-IroE-IroD-Fes-Yiel : emeni-AnEstB Emericella nidulans (Aspergillus nidulans) siderophore-degrading esterase AnEstB, emeni-q5av79 Emericella nidulans (Aspergillus nidulans) siderophore-degrading esterase AnEstA.
ABHD11-Acetyl_transferase : emeni-c8vu15Emericella nidulans (Aspergillus nidulans). Alpha/beta hydrolase, putative (AFU_orthologue AFUA_1G02390).
Acidic_Lipase : emeni-q5b446Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRR 194 / M139) (Aspergillus nidulans) Triglyceride lipase-cholesterol esterase, putative (AFU_orthologue; AFUA_5G08960), emeni-q5bcd2Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRR 194 / M139) (Aspergillus nidulans) Ab-hydrolase associated lipase, putative (AFU_orthologue; AFUA_2G14600).
Arb2_domain : emend-q7z8l7Emericella nidulans (Aspergillus nidulans). Putative histone deacetylase Arb2 domain.
BD-FAE : emeni-q5az32Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRR 194 / M139) (Aspergillus nidulans) Polyketide synthase, putative (JCVI).
Carboxypeptidase_S10 : emeni-CBPYAEmericella nidulans (Aspergillus nidulans) carboxypeptidase.
Duf_726 : emeni-q5azl2Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans) Putative uncharacterized protein, emeni-q5b602Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans) Putative uncharacterized protein.
Duf_829 : emeni-q5b1v2Emericella nidulans (Aspergillus nidulans) Putative uncharacterized protein, emeni-q5bar0Emericella nidulans (Aspergillus nidulans) Putative uncharacterized protein, emeni-q5beh9Emericella nidulans (Aspergillus nidulans) Putative uncharacterized protein, emeni-q5bgk7Emericella nidulans (Aspergillus nidulans) Putative uncharacterized protein.
Duf_1100-S : emeni-q5ara9Aspergillus nidulans FGSC A4 Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRR 194 / M139) (Aspergillus nidulans) hypothetical protein.
Esterase_phb : emeni-axe1Emericella nidulans (Aspergillus nidulans) AN6093-2 Acetylxylan esterase A.
FaeC : emeni-faecEmericella nidulans (Aspergillus nidulans) AN5267.2 Ferulic acid esterase C.
FSH1 : emeni-afocEmericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans). Asperfuranone biosynthesis protein B, emeni-dbaeEmericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans). Derivative of benzaldehyde biosynthesis cluster protein E.
Fungal-Bact_LIP : emeni-q5ay57Aspergillus nidulans FGSC A4 hypothetical protein, emeni-q5bcd1Aspergillus nidulans, Emericella nidulans, hypothetical protein.
Fusarinine_C_esterase_sidJ : emeni-q5ay37Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRR 194 / M139) (Aspergillus nidulans) Esterase, putative (AFU_orthologue; AFUA_7G00330).
Homoserine_transacetylase : emeni-CYSCEmericella nidulans (Aspergillus nidulans) putative homoserine o-acetyltransferase, emeni-met2Emericella nidulans (Aspergillus nidulans).
Hormone-sensitive_lipase_like : emeni-stciEmericella nidulans (and Aspergillus nidulans FGSC A4) stcI gene in sterigmatocystin biosynthetic cluster.
Kynurenine-formamidase : emeni-q5bdv9Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans). N-formylkynurenine formamidase.
LIDHydrolase : emeni-q5avd3Emericella nidulans (Aspergillus nidulans) Putative uncharacterized protein.
Lipase_3 : emeni-atg15Emericella nidulans (Aspergillus nidulans) putative lipase atg15 (EC 3.1.1.3) (autophagy-related protein 15).
MpaH : emeni-q5b719Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans). Toxin biosynthesis protein, putative (AFU_orthologue AFUA_4G12320).
Prolylcarboxypeptidase : emeni-q5awu9Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRR 194 / M139) (Aspergillus nidulans) Hypothetical serine carboxypeptidase (Eurofung).
Thioesterase : emeni-acvsEmericella nidulans (Aspergillus nidulans) Aspergillus nidulans FGSC A4 acv synthetase (acvs) Thioesterase domain, emeni-q4j6a7Emericella nidulans (Aspergillus nidulans) acv synthetase (fragment), emeni-stcaEmericella nidulans (Aspergillus nidulans) Aspergillus nidulans FGSC A4 putative sterigmatocystin biosynthesis polyketide synthase (pks)Thioesterase domain.
Thiohydrolase : emeni-q5ax97Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans). DltD N-terminal domain protein (AFU_orthologue AFUA_8G00380)

Title: The 2008 update of the Aspergillus nidulans genome annotation: a community effort
Wortman JR, Gilsenan JM, Joardar V, Deegan J, Clutterbuck J, Andersen MR, Archer D, Bencina M, Braus G and Turner G <76 more author(s)> Wortman JR, Gilsenan JM, Joardar V, Deegan J, Clutterbuck J, Andersen MR, Archer D, Bencina M, Braus G, Coutinho P, von Dohren H, Doonan J, Driessen AJ, Durek P, Espeso E, Fekete E, Flipphi M, Estrada CG, Geysens S, Goldman G, de Groot PW, Hansen K, Harris SD, Heinekamp T, Helmstaedt K, Henrissat B, Hofmann G, Homan T, Horio T, Horiuchi H, James S, Jones M, Karaffa L, Karanyi Z, Kato M, Keller N, Kelly DE, Kiel JA, Kim JM, van der Klei IJ, Klis FM, Kovalchuk A, Krasevec N, Kubicek CP, Liu B, Maccabe A, Meyer V, Mirabito P, Miskei M, Mos M, Mullins J, Nelson DR, Nielsen J, Oakley BR, Osmani SA, Pakula T, Paszewski A, Paulsen I, Pilsyk S, Pocsi I, Punt PJ, Ram AF, Ren Q, Robellet X, Robson G, Seiboth B, van Solingen P, Specht T, Sun J, Taheri-Talesh N, Takeshita N, Ussery D, vanKuyk PA, Visser H, van de Vondervoort PJ, de Vries RP, Walton J, Xiang X, Xiong Y, Zeng AP, Brandt BW, Cornell MJ, van den Hondel CA, Visser J, Oliver SG, Turner G (- 76)
Ref: Fungal Genet Biol, 46 Suppl 1:S2, 2009 : PubMed
Abstract


ESTHER: Wortman_2009_Fungal.Genet.Biol_46 Suppl 1_S2
PubMedSearch: Wortman 2009 Fungal.Genet.Biol 46 Suppl 1 S2
PubMedID: 19146970
Gene_locus related to this paper: emeni-axe1, emeni-c8v4m7, emeni-faec, emeni-ppme1, emeni-q5ara9, emeni-q5arf0, emeni-q5as30, emeni-q5ase8, emeni-q5av79, emeni-q5aw09, emeni-q5awc3, emeni-q5awc7, emeni-q5awu9, emeni-q5aww4, emeni-q5ax50, emeni-q5ay37, emeni-q5ay57, emeni-q5ay59, emeni-q5ayk9, emeni-q5ays5, emeni-q5az32, emeni-q5az91, emeni-q5az97, emeni-q5azp1, emeni-q5b0i6, emeni-q5b1h2, emeni-q5b2a9, emeni-q5b2p7, emeni-q5b3d2, emeni-q5b4q7, emeni-q5b5u7, emeni-q5b5y4, emeni-q5b9e7, emeni-q5b9i0, emeni-q5b364, emeni-q5b446, emeni-q5b938, emeni-q5ba78, emeni-q5bcd1, emeni-q5bcd2, emeni-q5bde7, emeni-q5bdr0, emeni-q5bf92, emeni-q7si80, emeni-q5bdv9, emeni-c8vu15, 9euro-a0a3d8t644, emeni-q5b719, emeni-q5ax97, emeni-tdia, emeni-afoc, emeni-dbae

Abstract

The identification and annotation of protein-coding genes is one of the primary goals of whole-genome sequencing projects, and the accuracy of predicting the primary protein products of gene expression is vital to the interpretation of the available data and the design of downstream functional applications. Nevertheless, the comprehensive annotation of eukaryotic genomes remains a considerable challenge. Many genomes submitted to public databases, including those of major model organisms, contain significant numbers of wrong and incomplete gene predictions. We present a community-based reannotation of the Aspergillus nidulans genome with the primary goal of increasing the number and quality of protein functional assignments through the careful review of experts in the field of fungal biology.



        

Title: Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae
Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Basturkmen M, Spevak CC and Birren BW <40 more author(s)> Galagan JE, Calvo SE, Cuomo C, Ma LJ, Wortman JR, Batzoglou S, Lee SI, Basturkmen M, Spevak CC, Clutterbuck J, Kapitonov V, Jurka J, Scazzocchio C, Farman M, Butler J, Purcell S, Harris S, Braus GH, Draht O, Busch S, d'Enfert C, Bouchier C, Goldman GH, Bell-Pedersen D, Griffiths-Jones S, Doonan JH, Yu J, Vienken K, Pain A, Freitag M, Selker EU, Archer DB, Penalva MA, Oakley BR, Momany M, Tanaka T, Kumagai T, Asai K, Machida M, Nierman WC, Denning DW, Caddick M, Hynes M, Paoletti M, Fischer R, Miller B, Dyer P, Sachs MS, Osmani SA, Birren BW (- 40)
Ref: Nature, 438:1105, 2005 : PubMed
Abstract


ESTHER: Galagan_2005_Nature_438_1105
PubMedSearch: Galagan 2005 Nature 438 1105
PubMedID: 16372000
Gene_locus related to this paper: emeni-axe1, emeni-BST1, emeni-c8vrl3, emeni-CUTI3, emeni-faec, emeni-ppme1, emeni-q5aqv0, emeni-q5ara9, emeni-q5av79, emeni-q5avd3, emeni-q5awc7, emeni-q5awq3, emeni-q5awu9, emeni-q5aww7, emeni-q5ax50, emeni-q5ay37, emeni-q5ay57, emeni-q5ayk9, emeni-q5az32, emeni-q5azl2, emeni-q5azp1, emeni-q5b1v2, emeni-q5b2c1, emeni-q5b3d2, emeni-q5b5j7, emeni-q5b7i6, emeni-q5b8p6, emeni-q5b9e7, emeni-q5b246, emeni-q5b446, emeni-q5b602, emeni-q5b938, emeni-q5ba78, emeni-q5bad3, emeni-q5bar0, emeni-q5bcd1, emeni-q5bcd2, emeni-q5bcf8, emeni-q5bdr0, emeni-q5beh9, emeni-q5bgk7, emeni-q7si80, emeni-q5bdv9, emeni-c8vu15, 9euro-a0a3d8t644, emeni-q5b719, emeni-q5ax97, emeni-tdia, emeni-afoc, emeni-dbae

Abstract

The aspergilli comprise a diverse group of filamentous fungi spanning over 200 million years of evolution. Here we report the genome sequence of the model organism Aspergillus nidulans, and a comparative study with Aspergillus fumigatus, a serious human pathogen, and Aspergillus oryzae, used in the production of sake, miso and soy sauce. Our analysis of genome structure provided a quantitative evaluation of forces driving long-term eukaryotic genome evolution. It also led to an experimentally validated model of mating-type locus evolution, suggesting the potential for sexual reproduction in A. fumigatus and A. oryzae. Our analysis of sequence conservation revealed over 5,000 non-coding regions actively conserved across all three species. Within these regions, we identified potential functional elements including a previously uncharacterized TPP riboswitch and motifs suggesting regulation in filamentous fungi by Puf family genes. We further obtained comparative and experimental evidence indicating widespread translational regulation by upstream open reading frames. These results enhance our understanding of these widely studied fungi as well as provide new insight into eukaryotic genome evolution and gene regulation.