Gene_locus Report for: copc7-a8n8h4 Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGS 9003) (Inky cap fungus) (Hormographiella aspergillata) Dipeptidyl-peptidase and tripeptidyl-peptidase
Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Fungi: N E > Dikarya: N E > Basidiomycota: N E > Agaricomycotina: N E > Agaricomycetes: N E > Agaricomycetidae: N E > Agaricales: N E > Psathyrellaceae: N E > Coprinopsis: N E > Coprinopsis cinerea: N E 6_AlphaBeta_hydrolase :
copc7-a8p0p4 Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata) Putative uncharacterized protein .
A85-EsteraseD-FGH :
copc7-a8n2b8 Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata) Esterase D .
Acetylxylan_esterase :
copc7-a8nq30 Coprinopsis cinerea (Inky cap fungus) (Hormographiella aspergillata) Cutinase .
Acidic_Lipase :
copc7-a8n6a5 Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGS 9003) (Inky cap fungus) (Hormographiella aspergillata) Triacylglycerol lipase .
Carboxypeptidase_S10 :
copc7-a8n941 Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGS 9003) (Inky cap fungus) (Hormographiella aspergillata) Putative uncharacterized protein ,
copc7-kex1 Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGS 9003) (Inky cap fungus) (Hormographiella aspergillata) Carboxypeptidase D .
CGI-58_ABHD5_ABHD4 :
copc7-a8nwm2 Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) (Inky can fungus) (Hormographiella aspergillata) Abhydrolase domain-containing protein 4 .
Cutinase :
copci-b9u444 Coprinopsis cinerea (Inky cap fungus) (Hormographiella aspergillata) Cutinase ,
copc7-a8nb05 Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGS 9003) (Inky cap fungus) (Hormographiella aspergillata) Triacylglycerol lipase ,
copc7-a8nha0 Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGS 9003) (Inky cap fungus) (Hormographiella aspergillata) Cutinase ,
copci-b9u443 Coprinopsis cinerea (Inky cap fungus) (Hormographiella aspergillata) Cutinase CcCut ,
copc7-a8nh79 Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGS 9003) (Inky cap fungus) (Hormographiella aspergillata) Cutinase .
Duf_726 :
copc7-a8n3x4 Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata) Putative uncharacterized protein ,
copc7-a8ner2 Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata) DUF726 domain-containing protein .
Epoxide_hydrolase :
copc7-a8n3e0 Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata) Putative uncharacterized protein ,
copc7-a8n3e1 Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata) Putative uncharacterized protein ,
copc7-a8nqv8 Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata) Putative uncharacterized protein .
Esterase_phb :
copc7-axe1 Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata). Acetylxylan esterase .
FaeC :
copc7-a8nzs7 Coprinopsis cinerea (Inky cap fungus) (Hormographiella aspergillata). Fungal cellulose binding domain-containing protein .
Fungal_carboxylesterase_lipase :
copc7-a8n3l7 Coprinopsis cinerea (Hormographiella aspergillata) (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) Putative uncharacterized protein ,
copc7-a8n4l7 Coprinopsis cinerea (Hormographiella aspergillata) (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) Putative uncharacterized protein ,
copc7-a8n596 Coprinopsis cinerea (Hormographiella aspergillata) (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) Putative uncharacterized protein ,
copc7-a8nc68 Coprinopsis cinerea (Hormographiella aspergillata) (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) Putative uncharacterized protein ,
copc7-a8ncq6 Coprinopsis cinerea (Hormographiella aspergillata) (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) Putative uncharacterized protein ,
copc7-a8ncq7 Coprinopsis cinerea (Hormographiella aspergillata) (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) Putative uncharacterized protein ,
copc7-a8ncr0 Coprinopsis cinerea (Hormographiella aspergillata) (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) Putative uncharacterized protein ,
copc7-a8nei8 Coprinopsis cinerea (Hormographiella aspergillata) (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) Putative uncharacterized protein ,
copc7-a8niw4 Coprinopsis cinerea (Hormographiella aspergillata) (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) Putative uncharacterized protein ,
copc7-a8nql9 Coprinopsis cinerea (Hormographiella aspergillata) (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) Putative uncharacterized protein ,
copc7-a8nuu9 Coprinopsis cinerea (Hormographiella aspergillata) (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) Putative uncharacterized protein ,
copc7-a8p0k3 Coprinopsis cinerea (Hormographiella aspergillata) (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) Putative uncharacterized protein ,
copc7-a8pag1 Coprinopsis cinerea (Hormographiella aspergillata) (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) Putative uncharacterized protein ,
copc7-a8pag3 Coprinopsis cinerea (Hormographiella aspergillata) (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) Putative uncharacterized protein ,
copc7-a8pch2 Coprinopsis cinerea (Hormographiella aspergillata) (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) Putative uncharacterized protein ,
copc7-d6rnh7 Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) (Inky cacap fungus) (Hormographiella aspergillata) Putative uncharacterized protein .
Glucuronoyl_esterase :
copc7-a8nll5 Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGS 9003) (Inky cap fungus) (Hormographiella aspergillata) Cip2 ,
copc7-a8nll6 Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGS 9003) (Inky cap fungus) (Hormographiella aspergillata) Cip2 ,
copc7-a8nll9 Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata) Cip2 ,
copc7-a8nb00.1 Coprinopsis cinerea (Hormographiella aspergillata) Cip2 ,
copc7-a8nb00.2 Coprinopsis cinerea (Hormographiella aspergillata) Cip2 ,
copc7-a8nb00.3 Coprinopsis cinerea (Hormographiella aspergillata) Cip2 ,
copc7-a8nb00.4 Coprinopsis cinerea (Hormographiella aspergillata) Cip2 ,
copc7-a8nb00.5 Coprinopsis cinerea (Hormographiella aspergillata) Cip2 ,
copc7-a8nb00.6 Coprinopsis cinerea (Hormographiella aspergillata) Cip2 ,
copc7-a8nb00.7 Coprinopsis cinerea (Hormographiella aspergillata) Cip2 ,
copc7-a8nb00.10 Coprinopsis cinerea (Hormographiella aspergillata) Cip2 ,
copc7-a8nlk5 Coprinopsis cinerea (Inky cap fungus) (Hormographiella aspergillata) Cip2 .
Hormone-sensitive_lipase_like :
copc7-a8nqf4 Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGS 9003) (Inky cap fungus) (Hormographiella aspergillata) Putative uncharacterized protein .
LIDHydrolase :
copc7-a8n2c2 Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) (Inky ca fungus) (Hormographiella aspergillata) Predicted protein .
Monoglyceridelipase_lysophospholip :
copc7-a8n702 Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata) Putative uncharacterized protein .
PMH_Peptidase_S9 :
copc7-d6rlx1 Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGS 9003) (Inky cap fungus) (Hormographiella aspergillata) Peptidase .
PPase_methylesterase_euk :
copc7-a8nvb5 Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata) Protein phosphatase methylesterase 1 .
Proline_iminopeptidase :
copc7-d6rm78 Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata). Proline iminopeptidase .
Prolylcarboxypeptidase :
copc7-a8nqg3 Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGS 9003) (Inky cap fungus) (Hormographiella aspergillata) Putative uncharacterized protein ,
copc7-a8nz18 Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGS 9003) (Inky cap fungus) (Hormographiella aspergillata) Endoprotease .
Steryl_acetyl_hydrolase :
copc7-a8nkc7 Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata) Putative uncharacterized protein Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: copc7-a8n8h4 Colored MSA for DPP4N_Peptidase_S9 (raw)
LRKLTMDHIFNGTFSARTTQLNWVPEGLRKITMDHIFNGTFSPQSTSLHW
IPEAGDGVFSVSTDGSINLVSLSTNSTRKLVDLADIRDEQGNPLAIADWK
VSPDMHHILVKADYRKQWRHSSFGNYYVHNLETKQTWPIIPPSSPSKTAY
ATWSPTGEAIAYVVENDLYVIPTADPSAEHIRVTTTGNATFFHGVPDWVY
EEEVFSGDHALWFSPDSSKIAFLSFDETEVPEFTFPIYNPTEDATTVNPY
TTEVVMKYPKPGYPNPIVSVHVFDLERYLNEHEGSGGPDGTEVLTLDWPN
RQAANNSVIMEIAWLSNSSLIVKEVNRNADDGHAILFDLSNEESVRARAT
GQIVRKLGKDGEQGDDGWIDADQAIYPLYLPDGEDAYLDIVPSKDGFNHI
ALFRPATSSEPQWLTTGDWEVTGLIRAVDTKKGLVYFTAAKSERQASIER
HLFSVPLPLDGSTPVATDSPTPLTDITKPGYYGTSFSPQAGYYVLTYSGP
SVPWQRVIQVDNSSFEYVLNTNDRLKAVDAEYESPIVTYSTLMSDGYELN
VKETRPPKFDDSGRTKYPVLFYVYGGPFSQQVDARWPRTAWSNYLAAGLG
YIVVSVDGRGTGYKGRKLRNPVKNNLGFFETIDQIEAARQYVRKPYVDSK
RIGIWGWSYGGFMSSKVVEANEGVHTLAMAVAPVTSWLLYDTIYTERYMN
LPALNPGGYVNASISNVTGFHNVDYLLAHGSGDDNVHYSNSAHLLDMFTQ
AKVRKYRFRMFTDSDHSIARRGANREVYEYLTAFLEEKWGKGPKRRG
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
L R K L T M D H I F N G T F S A R T T Q L N W V P E G L R K I T M D H I F N G T F S P Q S T S L H W I P E A G D G V F S V S T D G S I N L V S L S T N S T R K L V D L A D I R D E Q G N P L A I A D W K V S P D M H H I L V K A D Y R K Q W R H S S F G N Y Y V H N L E T K Q T W P I I P P S S P S K T A Y A T W S P T G E A I A Y V V E N D L Y V I P T A D P S A E H I R V T T T G N A T F F H G V P D W V Y E E E V F S G D H A L W F S P D S S K I A F L S F D E T E V P E F T F P I Y N P T E D A T T V N P Y T T E V V M K Y P K P G Y P N P I V S V H V F D L E R Y L N E H E G S G G P D G T E V L T L D W P N R Q A A N N S V I M E I A W L S N S S L I V K E V N R N A D D G H A I L F D L S N E E S V R A R A T G Q I V R K L G K D G E Q G D D G W I D A D Q A I Y P L Y L P D G E D A Y L D I V P S K D G F N H I A L F R P A T S S E P Q W L T T G D W E V T G L I R A V D T K K G L V Y F T A A K S E R Q A S I E R H L F S V P L P L D G S T P V A T D S P T P L T D I T K P G Y Y G T S F S P Q A G Y Y V L T Y S G P S V P W Q R V I Q V D N S S F E Y V L N T N D R L K A V D A E Y E S P I V T Y S T L M S D G Y E L N V K E T R P P K F D D S G R T K Y P V L F Y V Y G G P F S Q Q V D A R W P R T A W S N Y L A A G L G Y I V V S V D G R G T G Y K G R K L R N P V K N N L G F F E T I D Q I E A A R Q Y V R K P Y V D S K R I G I W G W S Y G G F M S S K V V E A N E G V H T L A M A V A P V T S W L L Y D T I Y T E R Y M N L P A L N P G G Y V N A S I S N V T G F H N V D Y L L A H G S G D D N V H Y S N S A H L L D M F T Q A K V R K Y R F R M F T D S D H S I A R R G A N R E V Y E Y L T A F L E E K W G K G P K R R G
Reference
Title: Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)Stajich JE , Wilke SK , Ahren D , Au CH , Birren BW , Borodovsky M , Burns C , Canback B , Casselton LA and Pukkila PJ <39 more author(s)> Stajich JE , Wilke SK , Ahren D , Au CH , Birren BW , Borodovsky M , Burns C , Canback B , Casselton LA , Cheng CK , Deng J , Dietrich FS , Fargo DC , Farman ML , Gathman AC , Goldberg J , Guigo R , Hoegger PJ , Hooker JB , Huggins A , James TY , Kamada T , Kilaru S , Kodira C , Kues U , Kupfer D , Kwan HS , Lomsadze A , Li W , Lilly WW , Ma LJ , Mackey AJ , Manning G , Martin F , Muraguchi H , Natvig DO , Palmerini H , Ramesh MA , Rehmeyer CJ , Roe BA , Shenoy N , Stanke M , Ter-Hovhannisyan V , Tunlid A , Velagapudi R , Vision TJ , Zeng Q , Zolan ME , Pukkila PJ (- 39) Ref: Proc Natl Acad Sci U S A, 107 :11889, 2010 : PubMed Abstract ESTHER: Stajich_2010_Proc.Natl.Acad.Sci.U.S.A_107_11889 PubMedSearch: Stajich 2010 Proc.Natl.Acad.Sci.U.S.A 107 11889 PubMedID: 20547848 Gene_locus related to this paper: copc7-a8n2b8 ,
copc7-a8n3e0 ,
copc7-a8n3e1 ,
copc7-a8n6a5 ,
copc7-a8n8h4 ,
copc7-a8n702 ,
copc7-a8n941 ,
copc7-a8nkc7 ,
copc7-a8nll5 ,
copc7-a8nll6 ,
copc7-a8nqf4 ,
copc7-a8nqg3 ,
copc7-a8nqv8 ,
copc7-a8nvb5 ,
copc7-a8nwm2 ,
copc7-a8nz18 ,
copc7-a8p0p4 ,
copc7-d6rlx1 ,
copc7-d6rnh7 ,
copc7-kex1 ,
copci-b9u444 ,
copc7-a8nb05 ,
copc7-a8nha0 ,
copci-b9u443 ,
copc7-a8nq30 ,
copc7-a8nh79 ,
copc7-d6rm78 ,
copc7-a8nzs7 ,
copc7-axe1 Abstract
The mushroom Coprinopsis cinerea is a classic experimental model for multicellular development in fungi because it grows on defined media, completes its life cycle in 2 weeks, produces some 10(8) synchronized meiocytes, and can be manipulated at all stages in development by mutation and transformation. The 37-megabase genome of C. cinerea was sequenced and assembled into 13 chromosomes. Meiotic recombination rates vary greatly along the chromosomes, and retrotransposons are absent in large regions of the genome with low levels of meiotic recombination. Single-copy genes with identifiable orthologs in other basidiomycetes are predominant in low-recombination regions of the chromosome. In contrast, paralogous multicopy genes are found in the highly recombining regions, including a large family of protein kinases (FunK1) unique to multicellular fungi. Analyses of P450 and hydrophobin gene families confirmed that local gene duplications drive the expansions of paralogous copies and the expansions occur in independent lineages of Agaricomycotina fungi. Gene-expression patterns from microarrays were used to dissect the transcriptional program of dikaryon formation (mating). Several members of the FunK1 kinase family are differentially regulated during sexual morphogenesis, and coordinate regulation of adjacent duplications is rare. The genomes of C. cinerea and Laccaria bicolor, a symbiotic basidiomycete, share extensive regions of synteny. The largest syntenic blocks occur in regions with low meiotic recombination rates, no transposable elements, and tight gene spacing, where orthologous single-copy genes are overrepresented. The chromosome assembly of C. cinerea is an essential resource in understanding the evolution of multicellularity in the fungi.
Other Papers
