Gene_Locus Report

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Gene_locus Report for: cofca-a0a068tws6

Coffea canephora (Robusta coffee). Uncharacterized protein

Relationship
Family|UCP031088
Block| X
Position in NCBI Life Tree|Coffea canephora
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > asterids: N E > lamiids: N E > Gentianales: N E > Rubiaceae: N E > Ixoroideae: N E > Gardenieae complex: N E > Bertiereae - Coffeeae clade: N E > Coffeeae: N E > Coffea: N E > Coffea canephora: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : HG739089
1 UniProt : A0A068TWS6
1 UniProt : A0A068TWS6
1 Interpro : A0A068TWS6
1 Pfam : A0A068TWS6
1 PIRSF : A0A068TWS6
1 SUPERFAM : A0A068TWS6
Sequence
Graphical view for this peptide sequence: cofca-a0a068tws6
Colored MSA for UCP031088 (raw)
MTILAQSDIRSAMHFATAFRHPSTGFNLSRAIIFRQSPLLPLRRLAIRVK
AFSTDTDKSSSSAGASSTDVGKLPEKPPICTADELHYVTVKNSQWRLALW
RYSPPPQAPRRNHPLLLLSGVGTNAIGYDLSPGSSFARYMCGQGFDTWIL
EVRGAGLSMQESDAKDIEKSAYAISEEMEAAAEGATNGAPSAVQKSTVNQ
NKSAESKVSAVNEDVLGIPTAWDESKLVAKLTETFISLSERFSGFLNESQ
SRIMSAKLFDQISKLLEDSFLFERFNEVRGKLLNLLETRQSSAVAGQIRD
LSQKLVNIVEEGQRSVSPQLYDLQERLATTIEDFQKQLDLIVKYDWDFDH
YLEEDVPVVMEYIRAQSGSRDGKLLAIGHSMGGILLYAMLSRCAFKGRES
GLAATVTLASSLDYTTSKSSLKLLLPLADPAQILNVPVVPLGALLSAAYP
LSSSPPYVLSWLVDLISAPDMMHPELLKKLVLNNFCTIPAKLVLQLTTAF
REGGLRDRSGNFFYKEHLHKCDVPVLAIAGDRDLICPPEAVYETVKLLPE
NLVSYKVFGEQDGQHYAHYDLVGGRMAAEQVYPCIIEFLSHHD
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MTILAQSDIRSAMHFATAFRHPSTGFNLSRAIIFRQSPLLPLRRLAIRVK
AFSTDTDKSSSSAGASSTDVGKLPEKPPICTADELHYVTVKNSQWRLALW
RYSPPPQAPRRNHPLLLLSGVGTNAIGYDLSPGSSFARYMCGQGFDTWIL
EVRGAGLSMQESDAKDIEKSAYAISEEMEAAAEGATNGAPSAVQKSTVNQ
NKSAESKVSAVNEDVLGIPTAWDESKLVAKLTETFISLSERFSGFLNESQ
SRIMSAKLFDQISKLLEDSFLFERFNEVRGKLLNLLETRQSSAVAGQIRD
LSQKLVNIVEEGQRSVSPQLYDLQERLATTIEDFQKQLDLIVKYDWDFDH
YLEEDVPVVMEYIRAQSGSRDGKLLAIGHSMGGILLYAMLSRCAFKGRES
GLAATVTLASSLDYTTSKSSLKLLLPLADPAQILNVPVVPLGALLSAAYP
LSSSPPYVLSWLVDLISAPDMMHPELLKKLVLNNFCTIPAKLVLQLTTAF
REGGLRDRSGNFFYKEHLHKCDVPVLAIAGDRDLICPPEAVYETVKLLPE
NLVSYKVFGEQDGQHYAHYDLVGGRMAAEQVYPCIIEFLSHHD



No Reference

Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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