Gene_Locus Report

Biblio print

Add to basket

Go to basket

Tree Display

AceDB Schema

XML Display

Feedback

Gene_locus Report for: chabu-a0a388kgf1

Chara braunii (Braun's stonewort). protein bem46-like

Relationship
Family|ABHD13-BEM46
Block| X
Position in NCBI Life Tree|Chara braunii
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Charophyceae: N E > Charales: N E > Characeae: N E > Chara: N E > Chara braunii: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : BFEA01000110
1 UniProt : A0A388KGF1
1 UniProt : A0A388KGF1
1 Interpro : A0A388KGF1
1 Pfam : A0A388KGF1
1 PIRSF : A0A388KGF1
1 SUPERFAM : A0A388KGF1
Sequence
Graphical view for this peptide sequence: chabu-a0a388kgf1
Colored MSA for ABHD13-BEM46 (raw)
MTGFFNGLLYGLGGLASVCLILLVAFQEKLVYVPVLPGLTREYPIFPSRF
RLQYEDVWLRAKDGVKLHSWFIKFDPPIRDIAHRLEFIDIMMQYLRCNVF
MLSYRGYGASDGSPSQWGLTQDAQAALEHLLARDDIDQKRIAVFGRSLGG
AVAVQLVKNNPGKVSVVILENTFTSILEMAGIMMPFLKHVIGHRWKPLNF
LVRSQWRSLDAIEQIREPILFISGLKDEMIPPTHMKKLYEAAKSARPRLM
VEFSTGMHMDTWIHGKDAYWRAISNFLNQYASGADDRDTM
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MTGFFNGLLYGLGGLASVCLILLVAFQEKLVYVPVLPGLTREYPIFPSRF
RLQYEDVWLRAKDGVKLHSWFIKFDPPIRDIAHRLEFIDIMMQYLRCNVF
MLSYRGYGASDGSPSQWGLTQDAQAALEHLLARDDIDQKRIAVFGRSLGG
AVAVQLVKNNPGKVSVVILENTFTSILEMAGIMMPFLKHVIGHRWKPLNF
LVRSQWRSLDAIEQIREPILFISGLKDEMIPPTHMKKLYEAAKSARPRLM
VEFSTGMHMDTWIHGKDAYWRAISNFLNQYASGADDRDTM


Reference
    Title: The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization
    Nishiyama T, Sakayama H, de Vries J, Buschmann H, Saint-Marcoux D, Ullrich KK, Haas FB, Vanderstraeten L, Becker D and Rensing SA <50 more author(s)>
    Ref: Cell, 174:448, 2018 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer