Gene_Locus Report

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Gene_locus Report for: capba-a0a2g2vcw4

Capsicum baccatum (Peruvian pepper); Capsicum annuum (Capsicum pepper); Capsicum chinense (Scotch bonnet) (Bonnet pepper). protein bem46-like

Comment
Other strains: Capsicum baccatum (Peruvian pepper); Capsicum annuum (Capsicum pepper); Capsicum chinense (Scotch bonnet) (Bonnet pepper)


Relationship
Family|ABHD13-BEM46
Block| X
Position in NCBI Life Tree|Capsicum baccatum
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > eudicotyledons: N E > Gunneridae: N E > Pentapetalae: N E > asterids: N E > lamiids: N E > Solanales: N E > Solanaceae: N E > Solanoideae: N E > Capsiceae: N E > Capsicum: N E > Capsicum baccatum: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
Sequence
Graphical view for this peptide sequence: capba-a0a2g2vcw4
Colored MSA for ABHD13-BEM46 (raw)
MVSYVSLLLYGVGGIVVAGMAILVAFQEKLVYVPVLPGLTKSYPITPARL
RLLYEDVWLRSSDGVRLHAWFIKLLPDCRGPTIIFFQENAGNIAHRLEMV
RIMLQRLQCNVFMLSYRGYGASDGCPSQHGITKDAQAALDHLVQRNDIDT
SRIVVFGRSLGGAVGSVLTKNNPDKVAGLILENTFTSILDMAGVLLPFLK
WIIGGSGSKGFKLLNFVVRSPWNTVDVIGEIKQPILFLSGLQDEMVPPFH
MQMLYAKAAAHNRQCLFVEFPNGMHMDTWLAGGDHYWRTIQNFLEETVPE
TKDDDSKKEKELSSKQNVSSDFVPS
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MVSYVSLLLYGVGGIVVAGMAILVAFQEKLVYVPVLPGLTKSYPITPARL
RLLYEDVWLRSSDGVRLHAWFIKLLPDCRGPTIIFFQENAGNIAHRLEMV
RIMLQRLQCNVFMLSYRGYGASDGCPSQHGITKDAQAALDHLVQRNDIDT
SRIVVFGRSLGGAVGSVLTKNNPDKVAGLILENTFTSILDMAGVLLPFLK
WIIGGSGSKGFKLLNFVVRSPWNTVDVIGEIKQPILFLSGLQDEMVPPFH
MQMLYAKAAAHNRQCLFVEFPNGMHMDTWLAGGDHYWRTIQNFLEETVPE
TKDDDSKKEKELSSKQNVSSDFVPS


Reference
    Title: New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication
    Kim S, Park J, Yeom SI, Kim YM, Seo E, Kim KT, Kim MS, Lee JM, Cheong K and Choi D <27 more author(s)>
    Ref: Genome Biol, 18:210, 2017 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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