Gene_Locus Report

Biblio print

Add to basket

Go to basket

Tree Display

AceDB Schema

XML Display

Feedback

Gene_locus Report for: ascsu-f1l2m0

Ascaris suum (Pig roundworm) (Ascaris lumbricoides) Serine protease

Comment
F1LI13 only fragment


Relationship
Family|Prolylcarboxypeptidase
Block| X
Position in NCBI Life Tree|Ascaris suum
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Protostomia: N E > Ecdysozoa: N E > Nematoda: N E > Chromadorea: N E > Ascaridida: N E > Ascaridoidea: N E > Ascarididae: N E > Ascaris: N E > Ascaris suum: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : JI170181, JI233388
2 UniProt : F1L2M0, F1LI13
2 UniProt : F1L2M0, F1LI13
2 Interpro : F1L2M0, F1LI13
2 Pfam : F1L2M0, F1LI13
2 PIRSF : F1L2M0, F1LI13
2 SUPERFAM : F1L2M0, F1LI13
Sequence
Graphical view for this peptide sequence: ascsu-f1l2m0
Colored MSA for Prolylcarboxypeptidase (raw)
MPLSFFGRPTGGFLHGGLNNRDAHASVSSDQFAATIETFYVTQPIDHSNP
PLGTWQQRVQYNPRFYRNESIIFLLIGGESPAAEKWVAQPNITYLRWAEK
YGAAVFQLEHRFFGKSRPYNDLKTSSLKYCTVDQALEDLASFIRQMNAKY
GYVNPRWVTFGGSYPGSLSAWFQVRYPDLTVGAVASSAPLTFLLDYYGYA
MVMENVIRNTSAECHEKIGNAITVILNKALTVAGREELSTKLKLKPAFNE
TTLTVRDLHNMMAYLFGGLQNVVQYTYDARNSITMGGFNVRNMCNAITSS
TSTDPVIQMRAIIDWIYTFYPSDDGTIANRYSDLIGLLSNTTFDDENGSE
NAAMRGWMWLCCNELGVLQTTDHGRNIFGNMLPLNYFIDICIDAFGDTVN
IVSIRDNNLAFRNRYGDANNYKAKNIVLPNGSFDPWHPLGTYENYPELHQ
KAILIEGTAHCADMYPAWSEEPSTLAPVRAEIEAELEYFIKESSSEATTA
ASEITTSTSGVIAASIPLLATTAVLVATH
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MPLSFFGRPTGGFLHGGLNNRDAHASVSSDQFAATIETFYVTQPIDHSNP
PLGTWQQRVQYNPRFYRNESIIFLLIGGESPAAEKWVAQPNITYLRWAEK
YGAAVFQLEHRFFGKSRPYNDLKTSSLKYCTVDQALEDLASFIRQMNAKY
GYVNPRWVTFGGSYPGSLSAWFQVRYPDLTVGAVASSAPLTFLLDYYGYA
MVMENVIRNTSAECHEKIGNAITVILNKALTVAGREELSTKLKLKPAFNE
TTLTVRDLHNMMAYLFGGLQNVVQYTYDARNSITMGGFNVRNMCNAITSS
TSTDPVIQMRAIIDWIYTFYPSDDGTIANRYSDLIGLLSNTTFDDENGSE
NAAMRGWMWLCCNELGVLQTTDHGRNIFGNMLPLNYFIDICIDAFGDTVN
IVSIRDNNLAFRNRYGDANNYKAKNIVLPNGSFDPWHPLGTYENYPELHQ
KAILIEGTAHCADMYPAWSEEPSTLAPVRAEIEAELEYFIKESSSEATTA
ASEITTSTSGVIAASIPLLATTAVLVATH


Reference
    Title: Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE
    Ref: Genome Res, 21:1462, 2011 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer