Gene_Locus Report

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Gene_locus Report for: ascsu-f1ktw1.2

Ascaris suum (Pig roundworm) (Ascaris lumbricoides) Serine protease

Comment
two genes concatened Pfam A Peptidase_S28 65 501 Pfam A Peptidase_S28 600 1030


Relationship
Family|Prolylcarboxypeptidase
Block| X
Position in NCBI Life Tree|Ascaris suum
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Opisthokonta: N E > Metazoa: N E > Eumetazoa: N E > Bilateria: N E > Protostomia: N E > Ecdysozoa: N E > Nematoda: N E > Chromadorea: N E > Ascaridida: N E > Ascaridoidea: N E > Ascarididae: N E > Ascaris: N E > Ascaris suum: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : JI165789
1 UniProt : F1KTW1
1 UniProt : F1KTW1
1 Interpro : F1KTW1
1 Pfam : F1KTW1
1 PIRSF : F1KTW1
1 SUPERFAM : F1KTW1
Sequence
Graphical view for this peptide sequence: ascsu-f1ktw1.2
Colored MSA for Prolylcarboxypeptidase (raw)
LVDYPPGFVAGNITMPVDHFDLTNMNTFDQRYWVNPQYAQPGGPHFLVIG
GEGRANVKWVTEPNLITMSMARKFNATVYMLEHRYYGDSFPTPDQSTENL
RWLTATQALADLAQFIMTMNERYNLVNPKWVTFGGSYPGMLSAWFRQFYP
QLSVGAVASSAPIEAKVDFYEYLIVVENALRVFNATCAENVKLAFDQIHQ
LSLTRTGRVTLSNLFTLKPEWNLTTEVTNLDIQYFFSILYDKFQGAVQYN
NDNTGSYATGGGIREVCGYMLNNAKTPMENVADVNIYMTNFSSGTFSYTD
NNYQNYIDYLKDVNAKSSSRSWTYQTCNEFGFFQSTDVGENIFGGPIPVN
IFIDMCQDVYGSKFTPRFVYEAVDKSQRFYGGRDYFKGTNVLFTNGNIDP
WHALSKYDGNGSVTTVLMNGTAHCADMYPPRDEDAADLAPTRELIGEKIA
EWLAITTSSAAEHIVHSLSPLLFYFIFMLIPRM
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

LVDYPPGFVAGNITMPVDHFDLTNMNTFDQRYWVNPQYAQPGGPHFLVIG
GEGRANVKWVTEPNLITMSMARKFNATVYMLEHRYYGDSFPTPDQSTENL
RWLTATQALADLAQFIMTMNERYNLVNPKWVTFGGSYPGMLSAWFRQFYP
QLSVGAVASSAPIEAKVDFYEYLIVVENALRVFNATCAENVKLAFDQIHQ
LSLTRTGRVTLSNLFTLKPEWNLTTEVTNLDIQYFFSILYDKFQGAVQYN
NDNTGSYATGGGIREVCGYMLNNAKTPMENVADVNIYMTNFSSGTFSYTD
NNYQNYIDYLKDVNAKSSSRSWTYQTCNEFGFFQSTDVGENIFGGPIPVN
IFIDMCQDVYGSKFTPRFVYEAVDKSQRFYGGRDYFKGTNVLFTNGNIDP
WHALSKYDGNGSVTTVLMNGTAHCADMYPPRDEDAADLAPTRELIGEKIA
EWLAITTSSAAEHIVHSLSPLLFYFIFMLIPRM


Reference
    Title: Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE
    Ref: Genome Res, 21:1462, 2011 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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