Gene_Locus Report

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Gene_locus Report for: anaco-a0a199via8

Ananas comosus (Pineapple) (Ananas ananas). Protein bem46

Relationship
Family|ABHD13-BEM46
Block| X
Position in NCBI Life Tree|Ananas comosus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Eukaryota: N E > Viridiplantae: N E > Streptophyta: N E > Streptophytina: N E > Embryophyta: N E > Tracheophyta: N E > Euphyllophyta: N E > Spermatophyta: N E > Magnoliophyta: N E > Mesangiospermae: N E > Liliopsida: N E > Petrosaviidae: N E > commelinids: N E > Poales: N E > Bromeliaceae: N E > Bromelioideae: N E > Ananas: N E > Ananas comosus: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : LSRQ01001732
1 UniProt : A0A199VIA8
1 UniProt : A0A199VIA8
1 Interpro : A0A199VIA8
1 Pfam : A0A199VIA8
1 PIRSF : A0A199VIA8
1 SUPERFAM : A0A199VIA8
Sequence
Graphical view for this peptide sequence: anaco-a0a199via8
Colored MSA for ABHD13-BEM46 (raw)
MASWLKALAYGAGGIVVAGMAALVALQERLVYVPVLPGLARSYAITPARL
RLHYDDVWLRSSDGVRLHSWFIKHSPHCRGPTILFFQENAGNIAHRLEFV
RLMMQRLQCNVFMLSYRGYGESDGYPSQHGIIKDAQAALDHLTQRNDIDT
SRIVVFGRSLGGAVGTVLAKNNPDKVSALILENTFTSILDMAGIMLPFLK
WFIGGSASKGPKVLNCLVRSPWSTIDAIGEVKQPILFISGLQDELVPPSH
MRVLYEKAIQHNNNCLFIDFPSGMHMDTWISGGDRYWRVLQLFLDQYVPE
RQRGDLNCKADSGDDGN
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MASWLKALAYGAGGIVVAGMAALVALQERLVYVPVLPGLARSYAITPARL
RLHYDDVWLRSSDGVRLHSWFIKHSPHCRGPTILFFQENAGNIAHRLEFV
RLMMQRLQCNVFMLSYRGYGESDGYPSQHGIIKDAQAALDHLTQRNDIDT
SRIVVFGRSLGGAVGTVLAKNNPDKVSALILENTFTSILDMAGIMLPFLK
WFIGGSASKGPKVLNCLVRSPWSTIDAIGEVKQPILFISGLQDELVPPSH
MRVLYEKAIQHNNNCLFIDFPSGMHMDTWISGGDRYWRVLQLFLDQYVPE
RQRGDLNCKADSGDDGN


Reference
    Title: The draft genome of MD-2 pineapple using hybrid error correction of long reads
    Redwan RM, Saidin A, Kumar SV
    Ref: DNA Research, 23:427, 2016 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
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