Gene_Locus Report

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Gene_locus Report for: 9zzzz-x1tg33

marine sediment metagenome. Uncharacterized protein

Relationship
Family|Xaa-Pro-like_dom
Block| X
Position in NCBI Life Tree|marine sediment metagenome
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> unclassified sequences: N E > metagenomes: N E > ecological metagenomes: N E > marine sediment metagenome: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : BARW01032914
1 UniProt : X1TG33
1 UniProt : X1TG33
1 Interpro : X1TG33
1 Pfam : X1TG33
1 PIRSF : X1TG33
1 SUPERFAM : X1TG33
Sequence
Graphical view for this peptide sequence: 9zzzz-x1tg33
Colored MSA for Xaa-Pro-like_dom (raw)
MDMIMESYALRYQEAGFAVLTFDYRHFGESEGEPRQLILIPYQLEDFTAA
IEYARSLKEISPARIALWGTSASGGYGIIIAAKDKNIACVCAQCPGLDPH
ASGEMFFKKLGIGYMLRLFVHGQRDMMRFRLGLSPHKIPIVGKPGSMAFF
PISDAYDGYSKLASENFINEICARVILRSHGFKPVEHLRNVQCPILIQIC
DNDSLAPISNKIAKEL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MDMIMESYALRYQEAGFAVLTFDYRHFGESEGEPRQLILIPYQLEDFTAA
IEYARSLKEISPARIALWGTSASGGYGIIIAAKDKNIACVCAQCPGLDPH
ASGEMFFKKLGIGYMLRLFVHGQRDMMRFRLGLSPHKIPIVGKPGSMAFF
PISDAYDGYSKLASENFINEICARVILRSHGFKPVEHLRNVQCPILIQIC
DNDSLAPISNKIAKEL


Reference
    Title: High frequency of phylogenetically diverse reductive dehalogenase-homologous genes in deep subseafloor sedimentary metagenomes
    Kawai M, Futagami T, Toyoda A, Takaki Y, Nishi S, Hori S, Arai W, Tsubouchi T, Morono Y and Takami H <4 more author(s)>
    Ref: Front Microbiol, 5:80, 2014 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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