Gene_locus Report for: 9zzzz-a0a0g3fes0 uncultured organism EH47 Uncharacterized protein
Comment
EH47 promiscuous activity 23/96 substrates Martinez-Martinez et al. 2018 Relationship
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.) unclassified sequences: N E > environmental samples: N E > uncultured organism: N E 5_AlphaBeta_hydrolase :
9zzzz-EH82 uncultured organism EH82 EH76 Uncharacterized protein .
6_AlphaBeta_hydrolase :
9zzzz-a0a3g1qtk3 uncultured organism Alpha/beta hydrolases pLP25 Pho25C phosphatase/phytase ,
9zzzz-a0a223he11 uncultured organism Lipase/esterase EstDL33 3-hydroxypalmitic acid methyl ester hydrolase ,
9zzzz-a0a223heg6 uncultured organism Lipase/esterase ELP104 3-hydroxypalmitic acid methyl ester hydrolase ,
9zzzz-a0a223he13 uncultured organism Lipase/esterase ELP96 3-hydroxypalmitic acid methyl ester hydrolase ,
9zzzz-a0a0g3feh8 uncultured organism EH123 Uncharacterized protein ,
9zzzz-a0a0g3feg9 uncultured organism EH103 Uncharacterized protein ,
9bact-t1w006 uncultured bacterium EH72 Esterase ,
9zzzz-g3crf7 uncultured organism AB hydrolase-1 domain-containing protein ,
9zzzz-g3cre9 uncultured organism. Putative uncharacterized protein ,
9zzzz-g3cre1 environmental samples uncultured organism Uncharacterized protein ,
9zzzz-g3crf1 environmental samples uncultured organism Putative uncharacterized proteinpLE02 .
A85-Feruloyl-Esterase :
9zzzz-a0a0g3fh10 uncultured organism EH144 Uncharacterized protein ,
9zzzz-a0a0g3fkz4 uncultured organism EH135 Uncharacterized protein ,
9zzzz-a0a0g3fh07 uncultured organism EH134 Uncharacterized protein ,
9zzzz-a0a0g3feq8 uncultured organism EH126 Uncharacterized protein .
A85-IroE-IroD-Fes-Yiel :
uncor-Q99IX4 uncultured organism hypothetical 32.6 kda protein .
ABHD6-Lip :
9zzzz-a0a0g3fh19 uncultured organism EH122 Uncharacterized protein ,
9zzzz-a0a0g3fkz8 uncultured organism EH104 Uncharacterized protein ,
9zzzz-a0a0g3fei1 uncultured organism EH81 Uncharacterized protein ,
9zzzz-m1p1l5 uncultured organism Alpha/beta superfamily hydrolase/acyltransferase .
ABHD11-Acetyl_transferase :
9zzzz-q5g036 uncultured organism putative lipase .
AlphaBeta_hydrolase :
9zzzz-a0a0g3fj48 uncultured organism PLA depolymerase GEN0160 .
Bacterial_lip_FamI.8 :
9zzzz-a0a0g3fh31 uncultured organism EH131 Uncharacterized protein .
BD-FAE :
9bact-a0a1s5qly8 uncultured organism EH108 Uncharacterized protein ,
9bact-a0a1s5qmh4 uncultured organism EH90 Uncharacterized protein ,
9zzzz-KY483647 uncultured organism EH77 Uncharacterized protein ,
9zzzz-g3crf0 uncultured organism AB hydrolase-3 domain-containing protein .
CarbLipBact_2 :
9zzzz-a0a0g3fes4 uncultured organism EH100 Uncharacterized protein .
Carbon-carbon_bond_hydrolase :
9zzzz-g3crc8 environmental samples uncultured organism Uncharacterized protein .
Carb_B_Bacteria :
9zzzz-t1w7u0 uncultured organism Carboxylesterase family ,
9zzzz-t1w4p0 uncultured organism; Sphingomonas sp. Carboxylesterase family ,
9zzzz-t1w943 uncultured organism Carboxylesterase family ,
9zzzz-t1w5l7 uncultured organism Carboxylesterase family ,
9zzzz-a0a0g3feu0 uncultured organism. Uncharacterized protein .
Chlorophyllase :
9zzzz-a0a0g3fh34 uncultured organism EH132 Uncharacterized protein ,
9zzzz-g3crc6 uncultured organism. Putative uncharacterized protein EstGS .
Dienelactone_hydrolase :
9zzzz-g3crd8 environmental samples uncultured organism DLH domain-containing protein .
Duf_3089 :
9zzzz-a0a0g3fh03 uncultured organism EH142 Uncharacterized protein .
Epoxide_hydrolase :
9zzzz-c3v8m6 uncultured organism Epoxide hydrolase ,
9zzzz-c3v8m7 uncultured organism Epoxide hydrolase .
Est9X :
9zzzz-a0a0g3fet6 uncultured organism EH71 Uncharacterized protein .
Esterase_phb :
9zzzz-a0a0g3feh5 uncultured organism EH137 Uncharacterized protein .
Glucuronoyl_esterase :
9zzzz-t1wak7 environmental samples uncultured organism Uncharacterized protein .
Homoserine_transacetylase :
9zzzz-a0a0g3fj60 environmental samples uncultured organism, EH28 Uncharacterized protein .
Hormone-sensitive_lipase_like :
9zzzz-XtjR8 uncultured organism hydrolase XtjR8 phthalate-hydrolase from a metagenomic library of lotus pond sludge ,
9zzzz-EstJ6 Uncultured organism clone estj6 EstJ6 phthalate-degrading hydrolase ,
9zzzz-a0a0g3fj39 uncultured organism PLA depolymerase GEN0105 ,
9bact-DMWf18.543 uncultured organism esterase DMWf18-543 ,
9bact-DMWf18.558 uncultured organism esterase DMWf18.558 ,
9zzzz-a0a0g3fh42 uncultured organism EH99 Uncharacterized protein ,
9zzzz-KY483651 uncultured organism EH91 Uncharacterized protein ,
9zzzz-EH87 uncultured organism EH87 Uncharacterized protein ,
9zzzz-a0a0g3fet2 uncultured organism EH79 Uncharacterized protein ,
9zzzz-a0a0g3fj57 Uncultured organism EH52 clone MGS0005 hypothetical protein ,
9zzzz-a0a0g3fh39 Uncultured organism EH43 clone MGS0089 hypothetical protein ,
9zzzz-a0a0g3fl25 Uncultured organism, EH21, clone MGS0091 hypothetical protein ,
9zzzz-q5g037 uncultured organism putative lipase ,
9zzzz-g3crg3 uncultured organism AB hydrolase-3 domain-containing protein ,
9zzzz-g3crf4 uncultured organism Abhydrolase_3 domain-containing protein ,
9zzzz-a0a0g3fej4 uncultured organism. clone MGS0095 EH18 Uncharacterized protein ,
9zzzz-g3crf5 uncultured organism. Putative uncharacterized protein ,
9zzzz-g3crf8 environmental samples uncultured organism Abhydrolase_3 domain-containing protein ,
9zzzz-g3crg1 environmental samples uncultured organism Abhydrolase_3 domain-containing protein ,
9zzzz-g3cre8 environmental samples uncultured organism Abhydrolase_3 domain-containing protein ,
9zzzz-g3crd0 environmental samples uncultured organism Abhydrolase_3 domain-containing protein ,
9zzzz-g3crc9 environmental samples uncultured organism Abhydrolase_3 domain-containing protein ,
9zzzz-g3crf6 environmental samples uncultured organism Abhydrolase_3 domain-containing protein ,
9zzzz-a0a0g3fej0 environmental samples uncultured organism clone MGS0090 EH16 Uncharacterized protein ,
9zzzz-g3crf9 environmental samples uncultured organism Abhydrolase_3 domain-containing protein ,
9zzzz-g3crg2 environmental samples uncultured organism Abhydrolase_3 domain-containing protein ,
9zzzz-g3crd6 environmental samples uncultured organism Abhydrolase_3 domain-containing protein ,
9zzzz-a0a0g3fj64 environmental samples uncultured organism clone MGS0077 EH6 Uncharacterized protein ,
9zzzz-g3cre3 environmental samples uncultured organism Abhydrolase_3 domain-containing protein ,
9zzzz-g3crd2 environmental samples uncultured organism Abhydrolase_3 domain-containing protein pLE02 ,
9zzzz-g3crc7 environmental samples uncultured organism Putative uncharacterized proteinpLE02 ,
9zzzz-a0a0g3feg6 environmental samples uncultured organism GEN0093 EH10 Uncharacterized protein ,
9zzzz-a0a0g3feu6 environmental samples uncultured organism clone MGS0103 EH13 Uncharacterized protein .
Lipase_2 :
uncor-Q91UY0 uncultured organism alkaline lipase (EC 3.1.1.3) ,
9zzzz-g3cre2 environmental samples uncultured organism Abhydrolase_3 domain-containing protein ,
9zzzz-g3cre4 environmental samples uncultured organism Abhydrolase_3 domain-containing protein .
Lipase_3 :
9zzzz-g3cre0 environmental samples uncultured organism Uncharacterized protein EstGH .
Lipase_bact_N_lipase :
9zzzz-a0a0g3fe15 uncultured organism EH75 Uncharacterized protein .
LYsophospholipase_carboxylesterase :
9zzzz-g3cre6 environmental samples uncultured organism Abhydrolase_2 domain-containing protein .
Monoglyceridelipase_lysophospholip :
9zzzz-d8vn29 uncultured organism Hydrolase alpha/beta fold family protein .
PGAP1 :
9zzzz-a0a0g3fj44 uncultured organism EH145 Uncharacterized protein Molecular evidence
Database
No mutation No structure No kinetic No Substrate No inhibitor
Sequence
Graphical view for this peptide sequence: 9zzzz-a0a0g3fes0 Colored MSA for 6_AlphaBeta_hydrolase (raw)
MFWNAKNGSVKIGDTQMEYVSFGYGSKTFIVLPGLSDGLLTVKGKALLLA
KPYVRFFKDYTVYMFSRKDKMPENYSIRDMAADQAKALEELGISKVSIMG
YSQGGMIAQFLAIDYPKLVEKLVIAVSAPRVNDIIHNAVSSWIEMAASSD
HKSLMIDTAEKMYSENYLKKYRKMYPIIGKVGKPRNYDRFMINAKAILSF
DAYEELNKIVCPTYIIGGEEDKTVGVKASYEMNERIENSVLHIYKGLGHA
PHEEAEDFYQIVYDFLEA
Legend
This sequence has been compared to family alignement (MSA) red => minority aminoacid blue => majority aminoacid color intensity => conservation rate title => sequence position(MSA position)aminoacid rate Catalytic site Catalytic site in the MSA
M F W N A K N G S V K I G D T Q M E Y V S F G Y G S K T F I V L P G L S D G L L T V K G K A L L L A K P Y V R F F K D Y T V Y M F S R K D K M P E N Y S I R D M A A D Q A K A L E E L G I S K V S I M G Y S Q G G M I A Q F L A I D Y P K L V E K L V I A V S A P R V N D I I H N A V S S W I E M A A S S D H K S L M I D T A E K M Y S E N Y L K K Y R K M Y P I I G K V G K P R N Y D R F M I N A K A I L S F D A Y E E L N K I V C P T Y I I G G E E D K T V G V K A S Y E M N E R I E N S V L H I Y K G L G H A P H E E A E D F Y Q I V Y D F L E A
Reference
Title: Determinants and prediction of esterase substrate promiscuity patternsMartinez-Martinez M , Coscolin C , Santiago G , Chow J , Stogios PJ , Bargiela R , Gertler C , Navarro-Fernandez J , Bollinger A and Ferrer M <32 more author(s)> Martinez-Martinez M , Coscolin C , Santiago G , Chow J , Stogios PJ , Bargiela R , Gertler C , Navarro-Fernandez J , Bollinger A , Thies S , Mendez-Garcia C , Popovic A , Brown G , Chernikova TN , Garcia-Moyano A , Bjergah GE , Perez-Garcia P , Hai T , Del Pozo MV , Stokke R , Steen IH , Cui H , Xu X , Nocek BP , Alcaide M , Distaso M , Mesa V , Pelaez AI , Sanchez J , Buchholz PCF , Pleiss J , Fernandez-Guerra A , Glockner FO , Golyshina OV , Yakimov MM , Savchenko A , Jaeger KE , Yakunin AF , Streit WR , Golyshin PN , Guallar V , Ferrer M (- 32) Ref: ACS Chemical Biology, 13 :225, 2018 : PubMed Abstract ESTHER: Martinez-Martinez_2018_ACS.Chem.Biol_13_225 PubMedSearch: Martinez-Martinez 2018 ACS.Chem.Biol 13 225 PubMedID: 29182315 Gene_locus related to this paper: 9zzzz-a0a2k8jn75 ,
9zzzz-a0a2k8jt94 ,
9zzzz-a0a0g3fj44 ,
9zzzz-a0a0g3fh10 ,
9zzzz-a0a0g3fh03 ,
9bact-a0a1s5qkj8 ,
9zzzz-a0a0g3feh5 ,
9zzzz-a0a0g3fkz4 ,
9zzzz-a0a0g3fh07 ,
9zzzz-a0a0g3fh34 ,
9zzzz-a0a0g3fh31 ,
9bact-KY458167 ,
alcbs-q0vqa3 ,
9bact-a0a1s5qki8 ,
9zzzz-a0a0g3feq8 ,
9zzzz-a0a0g3feh8 ,
9zzzz-a0a0g3fh19 ,
9bact-KY203037 ,
9bact-a0a1s5ql22 ,
9bact-a0a1s5qm34 ,
9bact-KY203034 ,
9bact-r9qzg0 ,
9bact-a0a1s5qly8 ,
9zzzz-a0a0g3fkz8 ,
9zzzz-a0a0g3feg9 ,
9zzzz-KY203033 ,
9zzzz-a0a0g3fes4 ,
9zzzz-a0a0g3fh42 ,
9bact-a0a1s5qlx2 ,
9zzzz-KY483651 ,
9bact-a0a1s5qmh4 ,
9zzzz-KY203032 ,
9zzzz-EH87 ,
9zzzz-a0a0g3fei1 ,
9zzzz-a0a0g3fet2 ,
9zzzz-KY483647 ,
9zzzz-EH82 ,
9zzzz-a0a0g3fe15 ,
9bact-KY203031 ,
9bact-t1w006 ,
9zzzz-a0a0g3fet6 ,
9bact-KY458164 ,
geoth-g8myf3 ,
9bact-a0a1s5ql04 ,
9gamm-a0a1y0ihk7 ,
9bact-a0a1s5qly6 ,
9bact-a0a1s5qkg4 ,
9bact-a0a1s5qkm4 ,
9gamm-s5tv80 ,
9gamm-a0a0c4zhg2 ,
9zzzz-t1b379 ,
9gamm-KY483646 ,
9bact-KY458160 ,
9zzzz-a0a0g3fj57 ,
9gamm-s5t8349 ,
9arch-KY203036 ,
9bact-KY458168 ,
9zzzz-a0a0g3fes0 ,
9zzzz-t1be47 ,
9bact-KY458159 ,
9zzzz-a0a0g3fh39 ,
9bact-t1vzd5 ,
9prot-EH41 ,
9bact-Lip114 ,
alcbs-q0vt77 ,
9bact-a0a1s5qke6 ,
9bact-a0a1s5qkf3 ,
9prot-SRP030024 ,
9gamm-s5t532 ,
9bact-a0a1s5qkl2 ,
9bact-a0a1s5qkk8 ,
9zzzz-KY203030 ,
9zzzz-t1d4I7 ,
9prot-KY019260 ,
9bact-a0a1s5qm38 ,
9arch-KY458161 ,
9prot-KY010302 ,
9zzzz-a0a0g3fl25 ,
9actn-KY010298 ,
9gamm-s5u059 ,
9bact-a0a1s5qmi7 ,
9bact-KY010297 ,
9bact-KY483642 ,
9bact-a0a1s5qkj1 ,
9bact-KY010299 ,
9bact-KY483648 ,
alcbs-q0vtl7 ,
9bact-a0a1s5qf1 ,
9bact-a0a1s5qkg0 ,
9bact-a0a0h4tgu6 ,
9bact-MilE3 ,
9bact-LAE6 ,
9alte-MGS-MT1 ,
9bact-r9qzf7 ,
9gamm-k0c6t6 ,
alcbs-q0vl36 ,
alcbs-q0vlq1 ,
alcbs-q0vq49 ,
bacsu-pnbae ,
canar-LipB ,
canan-lipasA ,
geost-lipas ,
marav-a1u5n0 ,
pseps-i7k8x5 ,
staep-GEHD ,
symth-q67mr3 ,
altma-s5cfn7 ,
cycsp-k0c2b8 ,
alcbs-q0vlk5 ,
9bact-k7qe48 ,
9bact-MGS-M1 ,
9bact-MGS-M2 ,
9bact-a0a0b5kns5 ,
9zzzz-a0a0g3fej4 ,
9zzzz-a0a0g3fj60 ,
9zzzz-a0a0g3fej0 ,
9zzzz-a0a0g3fj64 ,
9bact-a0a0b5kc16 ,
9zzzz-a0a0g3feg6 ,
9zzzz-a0a0g3feu6 Abstract
Esterases receive special attention because their wide distribution in biological systems and environments and their importance for physiology and chemical synthesis. The prediction of esterases substrate promiscuity level from sequence data and the molecular reasons why certain such enzymes are more promiscuous than others, remain to be elucidated. This limits the surveillance of the sequence space for esterases potentially leading to new versatile biocatalysts and new insights into their role in cellular function. Here we performed an extensive analysis of the substrate spectra of 145 phylogenetically and environmentally diverse microbial esterases, when tested with 96 diverse esters. We determined the primary factors shaping their substrate range by analyzing substrate range patterns in combination with structural analysis and protein-ligand simulations. We found a structural parameter that helps ranking (classifying) promiscuity level of esterases from sequence data at 94% accuracy. This parameter, the active site effective volume, exemplifies the topology of the catalytic environment by measuring the active site cavity volume corrected by the relative solvent accessible surface area (SASA) of the catalytic triad. Sequences encoding esterases with active site effective volumes (cavity volume/SASA) above a threshold show greater substrate spectra, which can be further extended in combination with phylogenetic data. This measure provides also a valuable tool for interrogating substrates capable of being converted. This measure, found to be transferred to phosphatases of the haloalkanoic acid dehalogenase superfamily and possibly other enzymatic systems, represents a powerful tool for low-cost bioprospecting for esterases with broad substrate ranges, in large scale sequence datasets.
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