Gene_Locus Report

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Gene_locus Report for: 9laco-a0a0r1vad0

Lactobacillus gastricus DSM 16045. Asp2-like accessory secretory protein

Relationship
Family|Asp2
Block| X
Position in NCBI Life Tree|Lactobacillus gastricus DSM 16045
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Firmicutes: N E > Bacilli: N E > Lactobacillales: N E > Lactobacillaceae: N E > Lactobacillus: N E > Lactobacillus gastricus: N E > Lactobacillus gastricus DSM 16045: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
2 Genbank : AZFN01000030, WP_056937958
1 UniProt : A0A0R1VAD0
1 UniProt : A0A0R1VAD0
1 Interpro : A0A0R1VAD0
1 Pfam : A0A0R1VAD0
1 PIRSF : A0A0R1VAD0
1 SUPERFAM : A0A0R1VAD0
Sequence
Graphical view for this peptide sequence: 9laco-a0a0r1vad0
Colored MSA for Asp2 (raw)
MDNFVLISHHDQTSQAPSDDDNVRWLWAAPGTVGQLDRRLKAENKAKKEL
LYRGFNGGALLLAMPTDEDLVILQKNLDAYRVFAIPELFEQKLSPAAQYF
ITSKLVTKLTGKSVAEMLEWLTERLYGGQTGIKLYTNAIEVAPTYHGRIN
YQGGTGVEIEDDFGDQFVPMFTWRWNMYVDPHRTLEYWPEYEKDAGIEVK
LGIRQNVGYEDHPVTVFSEDELKQSVRISGIPGQSQMSATLYIKGRGKIK
VGPLHYRWSRLGLGEFFPGGERIVDANRQEIDVYFNPGDLTPPLNIYFSG
YRMAEGFEGFYMMRSFKKPFMLIADPRVEGGGFYVGSEELEERIIQKIYE
KLDWLGFDHSQVITSGMSMGTFGAMYYGAQLGAHAIILSKPLASIGNIAL
NEGRQRFGGFPTSLDVLQANGPDQDPQHDGMTKAKAMNQKFWDVIDHADL
TKTQFAVGYMEQDDYDTTAFRDLMRHIRQSHQRVHVISKSYPGHHGDMSA
QLTSWFKQQYRTILREDF
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MDNFVLISHHDQTSQAPSDDDNVRWLWAAPGTVGQLDRRLKAENKAKKEL
LYRGFNGGALLLAMPTDEDLVILQKNLDAYRVFAIPELFEQKLSPAAQYF
ITSKLVTKLTGKSVAEMLEWLTERLYGGQTGIKLYTNAIEVAPTYHGRIN
YQGGTGVEIEDDFGDQFVPMFTWRWNMYVDPHRTLEYWPEYEKDAGIEVK
LGIRQNVGYEDHPVTVFSEDELKQSVRISGIPGQSQMSATLYIKGRGKIK
VGPLHYRWSRLGLGEFFPGGERIVDANRQEIDVYFNPGDLTPPLNIYFSG
YRMAEGFEGFYMMRSFKKPFMLIADPRVEGGGFYVGSEELEERIIQKIYE
KLDWLGFDHSQVITSGMSMGTFGAMYYGAQLGAHAIILSKPLASIGNIAL
NEGRQRFGGFPTSLDVLQANGPDQDPQHDGMTKAKAMNQKFWDVIDHADL
TKTQFAVGYMEQDDYDTTAFRDLMRHIRQSHQRVHVISKSYPGHHGDMSA
QLTSWFKQQYRTILREDF


Reference
    Title: Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera
    Sun Z, Harris HM, McCann A, Guo C, Argimon S, Zhang W, Yang X, Jeffery IB, Cooney JC and O'Toole PW <21 more author(s)>
    Ref: Nat Commun, 6:8322, 2015 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
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