Gene_Locus Report

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Gene_locus Report for: 9laco-a0a0r1rgu0

Lactobacillus oligofermentans DSM 15707 = LMG 22743. Accessory Sec system protein Asp2

Relationship
Family|Asp2
Block| X
Position in NCBI Life Tree|Lactobacillus oligofermentans DSM 15707 = LMG 22743
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Terrabacteria group: N E > Firmicutes: N E > Bacilli: N E > Lactobacillales: N E > Lactobacillaceae: N E > Lactobacillus: N E > Lactobacillus oligofermentans: N E > Lactobacillus oligofermentans DSM 15707 = LMG 22743: N E


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
3 Genbank : LN898144, AZFE01000031, WP_057890267
1 UniProt : A0A0R1RGU0
1 UniProt : A0A0R1RGU0
1 Interpro : A0A0R1RGU0
1 Pfam : A0A0R1RGU0
1 PIRSF : A0A0R1RGU0
1 SUPERFAM : A0A0R1RGU0
Sequence
Graphical view for this peptide sequence: 9laco-a0a0r1rgu0
Colored MSA for Asp2 (raw)
MATMVLPVIHIGTEPLALDDLLMNEFKYAWAKTVESPVYKDQPLVKDEKL
NSKIKRAIYLIDTSTPYATDYELLKELPANNVIFDTKVELSADIEDLFRI
KNWHRLDFTDVEALGNIISVNFYFEQGVYKIDFDELRISEQFSGTVQQTG
QTFRHLTGDFGNDWTRIASVADIIWLPEKISNRIVFEYATQGDAEIKVVA
QVTDSNSLEVTDQIELSGQAIERGLIVPAKAASRDMQIHILARGHGSVDL
GNIHFRRTRGEFGEVLVGGKQIVDKNDLNQELLIYFDPGDLQPPLNIYFS
GYQTAEKFEGVGMMARFGAPYMLVMDPRSEGGAFYQGSEEMENQLIDEIH
HNLNQLGFDHHDVILSGLSMGTYGALYYGAKLNPAGIVIGKPVIELGKVA
SGERILRPNTFGTSLDMLRNTMGGVDQDDIERMNQHFWDVFTQGDFSNTT
FAIAYMEQDDYDMTALPKLRAYLKENYPLVRLFSKGIEGRHNDNTYAVVQ
WFMKQYKSLLMLQFNRLIL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MATMVLPVIHIGTEPLALDDLLMNEFKYAWAKTVESPVYKDQPLVKDEKL
NSKIKRAIYLIDTSTPYATDYELLKELPANNVIFDTKVELSADIEDLFRI
KNWHRLDFTDVEALGNIISVNFYFEQGVYKIDFDELRISEQFSGTVQQTG
QTFRHLTGDFGNDWTRIASVADIIWLPEKISNRIVFEYATQGDAEIKVVA
QVTDSNSLEVTDQIELSGQAIERGLIVPAKAASRDMQIHILARGHGSVDL
GNIHFRRTRGEFGEVLVGGKQIVDKNDLNQELLIYFDPGDLQPPLNIYFS
GYQTAEKFEGVGMMARFGAPYMLVMDPRSEGGAFYQGSEEMENQLIDEIH
HNLNQLGFDHHDVILSGLSMGTYGALYYGAKLNPAGIVIGKPVIELGKVA
SGERILRPNTFGTSLDMLRNTMGGVDQDDIERMNQHFWDVFTQGDFSNTT
FAIAYMEQDDYDMTALPKLRAYLKENYPLVRLFSKGIEGRHNDNTYAVVQ
WFMKQYKSLLMLQFNRLIL


Reference
    Title: Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera
    Sun Z, Harris HM, McCann A, Guo C, Argimon S, Zhang W, Yang X, Jeffery IB, Cooney JC and O'Toole PW <21 more author(s)>
    Ref: Nat Commun, 6:8322, 2015 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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