Gene_Locus Report

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Gene_locus Report for: vibpa-VP1181

Vibrio parahaemolyticus lactonizing lipase

Comment
Other strains: Vibrio parahaemolyticus (serotype O3:K6 (strain RIMD 2210633); AN-5034; AQ3810; AQ4037; K5030; Peru-466)


Relationship
Family|Bacterial_lip_FamI.1
Block| L
Position in NCBI Life Tree|Vibrio parahaemolyticus
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Vibrionales: N E > Vibrionaceae: N E > Vibrio: N E > Vibrio harveyi group: N E > Vibrio parahaemolyticus: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
No structure
No kinetic





No Substrate
No inhibitor
1 Genbank : AP005077
1 UniProt : Q87QG8
1 UniProt : Q87QG8
1 Interpro : Q87QG8
1 Pfam : Q87QG8
1 PIRSF : Q87QG8
1 SUPERFAM : Q87QG8
Sequence
Graphical view for this peptide sequence: vibpa-VP1181
Colored MSA for Bacterial_lip_FamI.1 (raw)
MKLKLIAVLLFTLITLPIASANTATGYTQTKYPIVLVHGLFGFDSLAGVD
YFFGIPHSLTKDGATVYVAQVSATNSSEARGEQLLSQVETLLAATGANKV
NLIGHSHGGPTARYVASVRPDLVASVTSIGGVNKGSKVADLVRGTVPEGS
GTEQLAVKLAQGLTTLINLLSGGSDLDQDPLASLAALTTEGSLAFNQHYP
EGIPTSECGDGDLLAPNGVYYYSWTGSSTFSNVFDPTDAAMMVLGLAFDG
PNDGLVGACSTHLGKVIRDDYKMNHLDEINGLLGIHHLFETDPVTLYRQH
ANRLKLQGL
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MKLKLIAVLLFTLITLPIASANTATGYTQTKYPIVLVHGLFGFDSLAGVD
YFFGIPHSLTKDGATVYVAQVSATNSSEARGEQLLSQVETLLAATGANKV
NLIGHSHGGPTARYVASVRPDLVASVTSIGGVNKGSKVADLVRGTVPEGS
GTEQLAVKLAQGLTTLINLLSGGSDLDQDPLASLAALTTEGSLAFNQHYP
EGIPTSECGDGDLLAPNGVYYYSWTGSSTFSNVFDPTDAAMMVLGLAFDG
PNDGLVGACSTHLGKVIRDDYKMNHLDEINGLLGIHHLFETDPVTLYRQH
ANRLKLQGL


References
    Title: Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence
    Chen Y, Stine OC, Badger JH, Gil AI, Nair GB, Nishibuchi M, Fouts DE
    Ref: BMC Genomics, 12:294, 2011 : PubMed

            

    Title: Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae
    Makino K, Oshima K, Kurokawa K, Yokoyama K, Uda T, Tagomori K, Iijima Y, Najima M, Nakano M and Iida T <7 more author(s)>
    Ref: Lancet, 361:743, 2003 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
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