Gene_Locus Report

Biblio print

Add to basket

Go to basket

Tree Display

AceDB Schema

XML Display

Feedback

Gene_locus Report for: olean-olei00960

Oleispira antarctica olei00960

Relationship
Family|RsbQ-like
Block| X
Position in NCBI Life Tree|Oleispira antarctica
(Below N is a link to NCBI taxonomic web page and E link to ESTHER at designed phylum.)
> cellular organisms: N E > Bacteria: N E > Proteobacteria: N E > Gammaproteobacteria: N E > Oceanospirillales: N E > Oceanospirillaceae: N E > Oleispira: N E > Oleispira antarctica: N E
Warning: This entry is a compilation of different species or line or strain with more than 90% amino acid identity. You can retrieve all strain data


Molecular evidence
Database
No mutation
1 structure:
3QVM: The structure of olei00960, a hydrolase from Oleispira antarctica
No kinetic





No Substrate
No inhibitor
2 UniProt : U3KRE9, R4YP81
1 Structure : 3QVM
2 UniProt : U3KRE9, R4YP81
2 Interpro : U3KRE9, R4YP81
2 Pfam : U3KRE9, R4YP81
2 PIRSF : U3KRE9, R4YP81
2 SUPERFAM : U3KRE9, R4YP81
Sequence
Graphical view for this peptide sequence: olean-olei00960
Colored MSA for RsbQ-like (raw)
MIKQDVICYEKEDVVKRNNINITGGGEKTVLLAHGFGCDQNMWRFMLPEL
EKQFTVIVFDYVGSGQSDLESFSTKRYSSLEGYAKDVEEILVALDLVNVS
IIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDL
EELINLMDKNYIGWANYLAPLVMGASHSSELIGELSGSFCTTDPIVAKTF
AKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYMAENIPNSQLEL
IQAEGHCLHMTDAGLITPLLIHFIQNNQTRA
Legend This sequence has been compared to family alignement (MSA)
red => minority aminoacid
blue => majority aminoacid
color intensity => conservation rate
title => sequence position(MSA position)aminoacid rate
Catalytic site
Catalytic site in the MSA

MIKQDVICYEKEDVVKRNNINITGGGEKTVLLAHGFGCDQNMWRFMLPEL
EKQFTVIVFDYVGSGQSDLESFSTKRYSSLEGYAKDVEEILVALDLVNVS
IIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDL
EELINLMDKNYIGWANYLAPLVMGASHSSELIGELSGSFCTTDPIVAKTF
AKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYMAENIPNSQLEL
IQAEGHCLHMTDAGLITPLLIHFIQNNQTRA


Reference
    Title: Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica
    Kube M, Chernikova TN, Al-Ramahi Y, Beloqui A, Lopez-Cortez N, Guazzaroni ME, Heipieper HJ, Klages S, Kotsyurbenko OR and Golyshin PN <26 more author(s)>
    Ref: Nat Commun, 4:2156, 2013 : PubMed

            


Other Papers


Send your questions or comments to :
Mail to: Nicolas Lenfant, Thierry Hotelier, Yves Bourne, Pascale Marchot and Arnaud Chatonnet.
Please cite: Lenfant 2013 Nucleic.Acids.Res. or Marchot Chatonnet 2012 Prot.Pept Lett.
For technical information about these pages see:
ESTHER Home Page and ACEDB Home Page
AcePerl Lincoln Stein Home Page
webmaster

Acknowledgements and disclaimer