PHA_synth_I

Relationship

Family: PHA_synth_I

Block: X

Parent Family: Abhydrolase_6

Comment

(The family Pha_synthase was split in four families (PHA_synth_I, PHA_synth_II, PHA_synth_III, PhaC_cen_dom ) according to Interpro and Tigrpfam. PhaC_cen_dom groups enzyme with the central domain but not the class I,II,III domains)This entry represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerises hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of the cell. Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus. This entry represents the central domain of the bacterial poly-beta-hydroxybutyrate polymerase (PhaC). Polyhydroxyalkanoic acids (PHAs) are carbon and energy reserve polymers produced in some bacteria when carbon sources are plentiful and another nutrient, such as nitrogen, phosphate, oxygen, or sulphur, becomes limiting. PHAs composed of monomeric units ranging from 3 to 14 carbons exist in nature. When the carbon source is exhausted, PHA is utilised by the bacterium. PhaC links D-(-)-3-hydroxybutyrl-CoA to an existing PHA molecule by the formation of an ester bond PHA_synth_I TIGR01838 PHA_synth_II TIGR01839. The nucleophilic residue of the catalytic triad is a cysteine (with exceptions)

Database

Interpro : IPR010941 PhaC_cen_dom Poly-beta-hydroxybutyrate polymerase, central domain , IPR010963 Poly(R)-hydroxyalkanoic acid synthase, class I

PIRSF : No PIRSF

Pdoc : No Pdoc

Pfam : PF07167 PhaC_N

Prints : No Print

EC Number : No EC Number

Sequences

Peptide in Fasta
Nucleotide in Fasta
Alignment with Multalin Text only
Seed alignment with MAFFT No colour
Alignment with MAFFT No colour
Dendrogram The dnd file

References (5)

Title : Polyhydroxyalkanoate synthase (PhaC): The key enzyme for biopolyester synthesis - Neoh_2022_Curr.Res.Biotechnol_4_87
Author(s) : Neoh SZ , Chek MF , Tan HT , Linares-Pasten JA , Nandakumar A , Hakoshima T , Sudesh K
Ref : Current Research in Biotechnology , 4 :87 , 2022
Abstract : Neoh_2022_Curr.Res.Biotechnol_4_87
ESTHER : Neoh_2022_Curr.Res.Biotechnol_4_87
PubMedSearch : Neoh_2022_Curr.Res.Biotechnol_4_87
PubMedID:

Title : Asymmetric Open-Closed Dimer Mechanism of Polyhydroxyalkanoate Synthase PhaC - Chek_2020_iScience_23_101084
Author(s) : Chek MF , Kim SY , Mori T , Tan HT , Sudesh K , Hakoshima T
Ref : iScience , 23 :101084 , 2020
Abstract : Chek_2020_iScience_23_101084
ESTHER : Chek_2020_iScience_23_101084
PubMedSearch : Chek_2020_iScience_23_101084
PubMedID: 32388399
Gene_locus related to this paper: 9neis-e1apk1

Title : Structure of polyhydroxyalkanoate (PHA) synthase PhaC from Chromobacterium sp. USM2, producing biodegradable plastics - Chek_2017_Sci.Rep_7_5312
Author(s) : Chek MF , Kim SY , Mori T , Arsad H , Samian MR , Sudesh K , Hakoshima T
Ref : Sci Rep , 7 :5312 , 2017
Abstract : Chek_2017_Sci.Rep_7_5312
ESTHER : Chek_2017_Sci.Rep_7_5312
PubMedSearch : Chek_2017_Sci.Rep_7_5312
PubMedID: 28706283
Gene_locus related to this paper: 9neis-e1apk1

Title : Polyester synthases: natural catalysts for plastics - Rehm_2003_Biochem.J_376_15
Author(s) : Rehm BH
Ref : Biochemical Journal , 376 :15 , 2003
Abstract : Rehm_2003_Biochem.J_376_15
ESTHER : Rehm_2003_Biochem.J_376_15
PubMedSearch : Rehm_2003_Biochem.J_376_15
PubMedID: 12954080

Title : Cloning, molecular analysis, and expression of the polyhydroxyalkanoic acid synthase (phaC) gene from Chromobacterium violaceum - Kolibachuk_1999_Appl.Environ.Microbiol_65_3561
Author(s) : Kolibachuk D , Miller A , Dennis D
Ref : Applied Environmental Microbiology , 65 :3561 , 1999
Abstract : Kolibachuk_1999_Appl.Environ.Microbiol_65_3561
ESTHER : Kolibachuk_1999_Appl.Environ.Microbiol_65_3561
PubMedSearch : Kolibachuk_1999_Appl.Environ.Microbiol_65_3561
PubMedID: 10427049
Gene_locus related to this paper: chrvi-PHAC , vibpa-PHAC

Structures (4)

Genes Proteins in PHA_synth_I family (93)

Fragments of genes in PHA_synth_I family (1)

Structures in PHA_synth_I family (4)

Substrates in PHA_synth_I family (3)

No Inhibitor