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| Title : The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization - McCormick_2018_Plant.J_93_338 |
| Author(s) : McCormick RF , Truong SK , Sreedasyam A , Jenkins J , Shu S , Sims D , Kennedy M , Amirebrahimi M , Weers BD , McKinley B , Mattison A , Morishige DT , Grimwood J , Schmutz J , Mullet JE |
| Ref : Plant J , 93 :338 , 2018 |
| Abstract : McCormick_2018_Plant.J_93_338 |
| ESTHER : McCormick_2018_Plant.J_93_338 |
| PubMedSearch : McCormick_2018_Plant.J_93_338 |
| PubMedID: 29161754 |
| Gene_locus related to this paper: sorbi-a0a194ysf6 , sorbi-a0a1b6pnr2 , sorbi-a0a1b6qcb9 , sorbi-c5xx30 , sorbi-a0a1b6psg4 , sorbi-a0a1z5rj80 , sorbi-a0a1b6qfm2 , sorbi-a0a1b6qmu5 , sorbi-c6jru0 |
| Title : Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34 - Anderson_2016_Stand.Genomic.Sci_11_70 |
| Author(s) : Anderson IJ , DasSarma P , Lucas S , Copeland A , Lapidus A , Del Rio TG , Tice H , Dalin E , Bruce DC , Goodwin L , Pitluck S , Sims D , Brettin TS , Detter JC , Han CS , Larimer F , Hauser L , Land M , Ivanova N , Richardson P , Cavicchioli R , DasSarma S , Woese CR , Kyrpides NC |
| Ref : Stand Genomic Sci , 11 :70 , 2016 |
| Abstract : Anderson_2016_Stand.Genomic.Sci_11_70 |
| ESTHER : Anderson_2016_Stand.Genomic.Sci_11_70 |
| PubMedSearch : Anderson_2016_Stand.Genomic.Sci_11_70 |
| PubMedID: 27617060 |
| Gene_locus related to this paper: hallt-metxa |
| Title : Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA) - Mavromatis_2010_Stand.Genomic.Sci_2_9 |
| Author(s) : Mavromatis K , Sikorski J , Lapidus A , Glavina Del Rio T , Copeland A , Tice H , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Meincke L , Sims D , Chertkov O , Han C , Brettin T , Detter JC , Wahrenburg C , Rohde M , Pukall R , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Klenk HP , Kyrpides NC |
| Ref : Stand Genomic Sci , 2 :9 , 2010 |
| Abstract : Mavromatis_2010_Stand.Genomic.Sci_2_9 |
| ESTHER : Mavromatis_2010_Stand.Genomic.Sci_2_9 |
| PubMedSearch : Mavromatis_2010_Stand.Genomic.Sci_2_9 |
| PubMedID: 21304673 |
| Title : Complete genome sequence of Conexibacter woesei type strain (ID131577) - Pukall_2010_Stand.Genomic.Sci_2_212 |
| Author(s) : Pukall R , Lapidus A , Glavina Del Rio T , Copeland A , Tice H , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Mavromatis K , Ivanova N , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Meincke L , Sims D , Brettin T , Detter JC , Rohde M , Goker M , Bristow J , Eisen JA , Markowitz V , Kyrpides NC , Klenk HP , Hugenholtz P |
| Ref : Stand Genomic Sci , 2 :212 , 2010 |
| Abstract : Pukall_2010_Stand.Genomic.Sci_2_212 |
| ESTHER : Pukall_2010_Stand.Genomic.Sci_2_212 |
| PubMedSearch : Pukall_2010_Stand.Genomic.Sci_2_212 |
| PubMedID: 21304704 |
| Gene_locus related to this paper: conwi-d3fc89 |
| Title : Whole genome sequences of two Xylella fastidiosa strains (M12 and M23) causing almond leaf scorch disease in California - Chen_2010_J.Bacteriol_192_4534 |
| Author(s) : Chen J , Xie G , Han S , Chertkov O , Sims D , Civerolo EL |
| Ref : Journal of Bacteriology , 192 :4534 , 2010 |
| Abstract : Chen_2010_J.Bacteriol_192_4534 |
| ESTHER : Chen_2010_J.Bacteriol_192_4534 |
| PubMedSearch : Chen_2010_J.Bacteriol_192_4534 |
| PubMedID: 20601474 |
| Gene_locus related to this paper: xylfa-cxest , xylfa-metx , xylfa-pip , xylfa-XF0015 , xylfa-XF1029 , xylfa-XF1253 , xylfa-XF1282 , xylfa-XF1356 , xylfa-XF2330 , xylfa-XF2551 |
| Title : Complete genome sequence of Sulfurimonas autotrophica type strain (OK10) - Sikorski_2010_Stand.Genomic.Sci_3_194 |
| Author(s) : Sikorski J , Munk C , Lapidus A , Ngatchou Djao OD , Lucas S , Glavina Del Rio T , Nolan M , Tice H , Han C , Cheng JF , Tapia R , Goodwin L , Pitluck S , Liolios K , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Sims D , Meincke L , Brettin T , Detter JC , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Lang E , Spring S , Goker M , Woyke T , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP |
| Ref : Stand Genomic Sci , 3 :194 , 2010 |
| Abstract : Sikorski_2010_Stand.Genomic.Sci_3_194 |
| ESTHER : Sikorski_2010_Stand.Genomic.Sci_3_194 |
| PubMedSearch : Sikorski_2010_Stand.Genomic.Sci_3_194 |
| PubMedID: 21304749 |
| Gene_locus related to this paper: sulao-e0up24 , sulao-e0ute6 , sulao-metxa |
| Title : Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255) - Saunders_2009_Stand.Genomic.Sci_1_174 |
| Author(s) : Saunders E , Pukall R , Abt B , Lapidus A , Glavina Del Rio T , Copeland A , Tice H , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Meincke L , Sims D , Brettin T , Detter JC , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Han C |
| Ref : Stand Genomic Sci , 1 :174 , 2009 |
| Abstract : Saunders_2009_Stand.Genomic.Sci_1_174 |
| ESTHER : Saunders_2009_Stand.Genomic.Sci_1_174 |
| PubMedSearch : Saunders_2009_Stand.Genomic.Sci_1_174 |
| PubMedID: 21304654 |
| Gene_locus related to this paper: eggle-c8wmc6 , eggle-c8wpb6 |
| Title : The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar-contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer - Yagi_2009_Environ.Microbiol_11_2253 |
| Author(s) : Yagi JM , Sims D , Brettin T , Bruce D , Madsen EL |
| Ref : Environ Microbiol , 11 :2253 , 2009 |
| Abstract : Yagi_2009_Environ.Microbiol_11_2253 |
| ESTHER : Yagi_2009_Environ.Microbiol_11_2253 |
| PubMedSearch : Yagi_2009_Environ.Microbiol_11_2253 |
| PubMedID: 19453698 |
| Gene_locus related to this paper: polna-hboh |
| Title : Complete genome sequence of Kytococcus sedentarius type strain (541) - Sims_2009_Stand.Genomic.Sci_1_12 |
| Author(s) : Sims D , Brettin T , Detter JC , Han C , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Chen F , Lucas S , Tice H , Cheng JF , Bruce D , Goodwin L , Pitluck S , Ovchinnikova G , Pati A , Ivanova N , Mavrommatis K , Chen A , Palaniappan K , D'Haeseleer P , Chain P , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Schneider S , Goker M , Pukall R , Kyrpides NC , Klenk HP |
| Ref : Stand Genomic Sci , 1 :12 , 2009 |
| Abstract : Sims_2009_Stand.Genomic.Sci_1_12 |
| ESTHER : Sims_2009_Stand.Genomic.Sci_1_12 |
| PubMedSearch : Sims_2009_Stand.Genomic.Sci_1_12 |
| PubMedID: 21304632 |
| Gene_locus related to this paper: kytsd-c7nfq8 , kytsd-c7nib9 , kytsd-c7niy9 , kytsd-c7nl26 , kytsd-c7nj46 , kytsd-c7nig1 |
| Title : Complete genome sequence of Streptobacillus moniliformis type strain (9901) - Nolan_2009_Stand.Genomic.Sci_1_300 |
| Author(s) : Nolan M , Gronow S , Lapidus A , Ivanova N , Copeland A , Lucas S , Del Rio TG , Chen F , Tice H , Pitluck S , Cheng JF , Sims D , Meincke L , Bruce D , Goodwin L , Brettin T , Han C , Detter JC , Ovchinikova G , Pati A , Mavromatis K , Mikhailova N , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Rohde M , Sproer C , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Chain P |
| Ref : Stand Genomic Sci , 1 :300 , 2009 |
| Abstract : Nolan_2009_Stand.Genomic.Sci_1_300 |
| ESTHER : Nolan_2009_Stand.Genomic.Sci_1_300 |
| PubMedSearch : Nolan_2009_Stand.Genomic.Sci_1_300 |
| PubMedID: 21304670 |
| Gene_locus related to this paper: strm9-d1ayq9 , strm9-d1avt1 |
| Title : Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575) - Spring_2009_Stand.Genomic.Sci_1_242 |
| Author(s) : Spring S , Lapidus A , Schroder M , Gleim D , Sims D , Meincke L , Glavina Del Rio T , Tice H , Copeland A , Cheng JF , Lucas S , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavromatis K , Mikhailova N , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CD , Chain P , Saunders E , Brettin T , Detter JC , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Han C |
| Ref : Stand Genomic Sci , 1 :242 , 2009 |
| Abstract : Spring_2009_Stand.Genomic.Sci_1_242 |
| ESTHER : Spring_2009_Stand.Genomic.Sci_1_242 |
| PubMedSearch : Spring_2009_Stand.Genomic.Sci_1_242 |
| PubMedID: 21304664 |
| Gene_locus related to this paper: desas-c8vw82 , desas-c8vxd2 |
| Title : Complete genome sequence of Desulfomicrobium baculatum type strain (X) - Copeland_2009_Stand.Genomic.Sci_1_29 |
| Author(s) : Copeland A , Spring S , Goker M , Schneider S , Lapidus A , Del Rio TG , Tice H , Cheng JF , Chen F , Nolan M , Bruce D , Goodwin L , Pitluck S , Ivanova N , Mavrommatis K , Ovchinnikova G , Pati A , Chen A , Palaniappan K , Land M , Hauser L , Chang YJ , Jeffries CC , Meincke L , Sims D , Brettin T , Detter JC , Han C , Chain P , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Kyrpides NC , Klenk HP , Lucas S |
| Ref : Stand Genomic Sci , 1 :29 , 2009 |
| Abstract : Copeland_2009_Stand.Genomic.Sci_1_29 |
| ESTHER : Copeland_2009_Stand.Genomic.Sci_1_29 |
| PubMedSearch : Copeland_2009_Stand.Genomic.Sci_1_29 |
| PubMedID: 21304634 |
| Gene_locus related to this paper: desbd-c7ln23 , desbd-c7lrc0 , desbd-c7lw38 , desbd-c7ls17 |
| Title : Complete genome sequence of Cryptobacterium curtum type strain (12-3) - Mavrommatis_2009_Stand.Genomic.Sci_1_93 |
| Author(s) : Mavrommatis K , Pukall R , Rohde C , Chen F , Sims D , Brettin T , Kuske C , Detter JC , Han C , Lapidus A , Copeland A , Glavina Del Rio T , Nolan M , Lucas S , Tice H , Cheng JF , Bruce D , Goodwin L , Pitluck S , Ovchinnikova G , Pati A , Ivanova N , Chen A , Palaniappan K , Chain P , D'Haeseleer P , Goker M , Bristow J , Eisen JA , Markowitz V , Hugenholtz P , Rohde M , Klenk HP , Kyrpides NC |
| Ref : Stand Genomic Sci , 1 :93 , 2009 |
| Abstract : Mavrommatis_2009_Stand.Genomic.Sci_1_93 |
| ESTHER : Mavrommatis_2009_Stand.Genomic.Sci_1_93 |
| PubMedSearch : Mavrommatis_2009_Stand.Genomic.Sci_1_93 |
| PubMedID: 21304644 |