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References (17)

Title : The genome of the Western clawed frog Xenopus tropicalis - Hellsten_2010_Science_328_633
Author(s) : Hellsten U , Harland RM , Gilchrist MJ , Hendrix D , Jurka J , Kapitonov V , Ovcharenko I , Putnam NH , Shu S , Taher L , Blitz IL , Blumberg B , Dichmann DS , Dubchak I , Amaya E , Detter JC , Fletcher R , Gerhard DS , Goodstein D , Graves T , Grigoriev IV , Grimwood J , Kawashima T , Lindquist E , Lucas SM , Mead PE , Mitros T , Ogino H , Ohta Y , Poliakov AV , Pollet N , Robert J , Salamov A , Sater AK , Schmutz J , Terry A , Vize PD , Warren WC , Wells D , Wills A , Wilson RK , Zimmerman LB , Zorn AM , Grainger R , Grammer T , Khokha MK , Richardson PM , Rokhsar DS
Ref : Science , 328 :633 , 2010
Abstract : Hellsten_2010_Science_328_633
ESTHER : Hellsten_2010_Science_328_633
PubMedSearch : Hellsten_2010_Science_328_633
PubMedID: 20431018
Gene_locus related to this paper: xenla-q6pcj9 , xentr-a9umk0 , xentr-abhdb , xentr-ACHE , xentr-b0bm77 , xentr-b1h0y7 , xentr-b2guc4 , xentr-b7zt03 , xentr-b7ztj4 , xentr-BCHE1 , xentr-BCHE2 , xentr-cxest2 , xentr-d2x2k4 , xentr-d2x2k6 , xentr-f6rff6 , xentr-f6v0g3 , xentr-f6v2j6 , xentr-f6v3z1 , xentr-f6y4c8 , xentr-f6yve5 , xentr-f7a4y9 , xentr-f7acc5 , xentr-f7e2e2 , xentr-LOC394897 , xentr-ndrg1 , xentr-q0vfb6 , xentr-f7cpl7 , xentr-f6yj44 , xentr-f7ejk4 , xentr-f6q8j8 , xentr-f6z8f0 , xentr-f7d709 , xentr-b0bmb8 , xentr-f7af63 , xentr-a0a1b8y2w9 , xentr-f7d4k9 , xentr-f6r032 , xentr-f6yvq3 , xentr-a0a1b8y2z3 , xentr-f7afg4 , xentr-f6xb15 , xentr-f7e1r2 , xentr-a4ihf1 , xentr-f7eue5 , xentr-f6u7u3 , xentr-f172a , xentr-f7equ8 , xentr-f7dd89 , xentr-a9jtx5

Title : Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40 T - Weiner_2008_PLoS.Genet_4_e1000087
Author(s) : Weiner RM , Taylor LE, 2nd , Henrissat B , Hauser L , Land M , Coutinho PM , Rancurel C , Saunders EH , Longmire AG , Zhang H , Bayer EA , Gilbert HJ , Larimer F , Zhulin IB , Ekborg NA , Lamed R , Richardson PM , Borovok I , Hutcheson S
Ref : PLoS Genet , 4 :e1000087 , 2008
Abstract : Weiner_2008_PLoS.Genet_4_e1000087
ESTHER : Weiner_2008_PLoS.Genet_4_e1000087
PubMedSearch : Weiner_2008_PLoS.Genet_4_e1000087
PubMedID: 18516288
Gene_locus related to this paper: sacd2-q21f03 , sacd2-q21l72 , sacd2-q21ms2 , sacd2-q21ll5

Title : The genome of Polaromonas sp. strain JS666: insights into the evolution of a hydrocarbon- and xenobiotic-degrading bacterium, and features of relevance to biotechnology - Mattes_2008_Appl.Environ.Microbiol_74_6405
Author(s) : Mattes TE , Alexander AK , Richardson PM , Munk AC , Han CS , Stothard P , Coleman NV
Ref : Applied Environmental Microbiology , 74 :6405 , 2008
Abstract : Mattes_2008_Appl.Environ.Microbiol_74_6405
ESTHER : Mattes_2008_Appl.Environ.Microbiol_74_6405
PubMedSearch : Mattes_2008_Appl.Environ.Microbiol_74_6405
PubMedID: 18723656
Gene_locus related to this paper: polsj-hboh

Title : Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth - Lee_2008_BMC.Genomics_9_247
Author(s) : Lee JH , Karamychev VN , Kozyavkin SA , Mills D , Pavlov AR , Pavlova NV , Polouchine NN , Richardson PM , Shakhova VV , Slesarev AI , Weimer B , O'Sullivan DJ
Ref : BMC Genomics , 9 :247 , 2008
Abstract : Lee_2008_BMC.Genomics_9_247
ESTHER : Lee_2008_BMC.Genomics_9_247
PubMedSearch : Lee_2008_BMC.Genomics_9_247
PubMedID: 18505588
Gene_locus related to this paper: bifli-c2gxu7 , biflo-BL0073 , biflo-BL0336 , biflo-BL0581 , biflo-BL0582 , biflo-BL0682 , biflo-BL0787 , biflo-BL0807 , biflo-BL1109 , biflo-BL1514 , biflo-PAP , biflo-PTRB

Title : The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome - Sela_2008_Proc.Natl.Acad.Sci.U.S.A_105_18964
Author(s) : Sela DA , Chapman J , Adeuya A , Kim JH , Chen F , Whitehead TR , Lapidus A , Rokhsar DS , Lebrilla CB , German JB , Price NP , Richardson PM , Mills DA
Ref : Proc Natl Acad Sci U S A , 105 :18964 , 2008
Abstract : Sela_2008_Proc.Natl.Acad.Sci.U.S.A_105_18964
ESTHER : Sela_2008_Proc.Natl.Acad.Sci.U.S.A_105_18964
PubMedSearch : Sela_2008_Proc.Natl.Acad.Sci.U.S.A_105_18964
PubMedID: 19033196
Gene_locus related to this paper: bifli-c2gxu7 , biflo-BL0073 , biflo-BL0336 , biflo-BL0581 , biflo-BL0582 , biflo-BL0787 , biflo-BL0807 , biflo-BL1514 , biflo-PTRB , bifln-c2gtr2

Title : The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis - Martin_2008_Nature_452_88
Author(s) : Martin F , Aerts A , Ahren D , Brun A , Danchin EG , Duchaussoy F , Gibon J , Kohler A , Lindquist E , Pereda V , Salamov A , Shapiro HJ , Wuyts J , Blaudez D , Buee M , Brokstein P , Canback B , Cohen D , Courty PE , Coutinho PM , Delaruelle C , Detter JC , Deveau A , Difazio S , Duplessis S , Fraissinet-Tachet L , Lucic E , Frey-Klett P , Fourrey C , Feussner I , Gay G , Grimwood J , Hoegger PJ , Jain P , Kilaru S , Labbe J , Lin YC , Legue V , Le Tacon F , Marmeisse R , Melayah D , Montanini B , Muratet M , Nehls U , Niculita-Hirzel H , Oudot-Le Secq MP , Peter M , Quesneville H , Rajashekar B , Reich M , Rouhier N , Schmutz J , Yin T , Chalot M , Henrissat B , Kues U , Lucas S , Van de Peer Y , Podila GK , Polle A , Pukkila PJ , Richardson PM , Rouze P , Sanders IR , Stajich JE , Tunlid A , Tuskan G , Grigoriev IV
Ref : Nature , 452 :88 , 2008
Abstract : Martin_2008_Nature_452_88
ESTHER : Martin_2008_Nature_452_88
PubMedSearch : Martin_2008_Nature_452_88
PubMedID: 18322534
Gene_locus related to this paper: lacbs-b0cns1 , lacbs-b0cpl4 , lacbs-b0cr62 , lacbs-b0cr66 , lacbs-b0csq9 , lacbs-b0ct56 , lacbs-b0ctt5 , lacbs-b0cuw1 , lacbs-b0cv23 , lacbs-b0cxm7 , lacbs-b0cz37 , lacbs-b0czx3 , lacbs-b0d0z5 , lacbs-b0d4i0 , lacbs-b0d4j3 , lacbs-b0d5n6 , lacbs-b0d8k0 , lacbs-b0d263 , lacbs-b0dhh1 , lacbs-b0dkp6 , lacbs-b0dmr2 , lacbs-b0dmt4 , lacbs-b0dsx5 , lacbs-b0dt05 , lacbs-b0dtw4 , lacbs-b0du88 , lacbs-b0dsl6

Title : The Calyptogena magnifica chemoautotrophic symbiont genome - Newton_2007_Science_315_998
Author(s) : Newton IL , Woyke T , Auchtung TA , Dilly GF , Dutton RJ , Fisher MC , Fontanez KM , Lau E , Stewart FJ , Richardson PM , Barry KW , Saunders E , Detter JC , Wu D , Eisen JA , Cavanaugh CM
Ref : Science , 315 :998 , 2007
Abstract : Newton_2007_Science_315_998
ESTHER : Newton_2007_Science_315_998
PubMedSearch : Newton_2007_Science_315_998
PubMedID: 17303757
Gene_locus related to this paper: rutmc-a1aw39 , rutmc-a1ax96

Title : Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis - Jeffries_2007_Nat.Biotechnol_25_319
Author(s) : Jeffries TW , Grigoriev IV , Grimwood J , Laplaza JM , Aerts A , Salamov A , Schmutz J , Lindquist E , Dehal P , Shapiro H , Jin YS , Passoth V , Richardson PM
Ref : Nat Biotechnol , 25 :319 , 2007
Abstract : Jeffries_2007_Nat.Biotechnol_25_319
ESTHER : Jeffries_2007_Nat.Biotechnol_25_319
PubMedSearch : Jeffries_2007_Nat.Biotechnol_25_319
PubMedID: 17334359
Gene_locus related to this paper: picst-a3geu9 , picst-a3gfu2 , picst-a3ggh9 , picst-a3gha8 , picst-a3ghe3 , picst-a3gi73 , picst-a3lmu3 , picst-a3ln06 , picst-a3ln59 , picst-a3lnv8 , picst-a3lp77 , picst-a3lqt4 , picst-a3lrt0 , picst-a3ls15 , picst-a3lsj8 , picst-a3lu11 , picst-a3luu0 , picst-a3lv87 , picst-a3lvi5 , picst-a3lvu9 , picst-a3lvv2 , picst-a3lwa4 , picst-a3lxl2 , picst-a3lxs8 , picst-a3lyi3 , picst-atg15 , picst-bna7 , picst-a3lyh1 , picst-a3lnc5 , picst-a3lr32

Title : Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1 - Kane_2007_J.Bacteriol_189_1931
Author(s) : Kane SR , Chakicherla AY , Chain PS , Schmidt R , Shin MW , Legler TC , Scow KM , Larimer FW , Lucas SM , Richardson PM , Hristova KR
Ref : Journal of Bacteriology , 189 :1931 , 2007
Abstract : Kane_2007_J.Bacteriol_189_1931
ESTHER : Kane_2007_J.Bacteriol_189_1931
PubMedSearch : Kane_2007_J.Bacteriol_189_1931
PubMedID: 17158667
Gene_locus related to this paper: metpp-a2scm2 , metpp-a2set2 , metpp-a2sg50 , metpp-a2sg73 , metpp-a2si41 , metpp-a2siz8 , metpp-a2skw2 , metpp-a2slp5 , metpp-a2slq1 , metpp-a2slq8 , metpp-a2sly3 , metpp-metx , metpp-a2smg5 , metpp-a2skr2 , metpp-a2sg36 , metpp-a2sjv0

Title : The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans - Beller_2006_J.Bacteriol_188_1473
Author(s) : Beller HR , Chain PS , Letain TE , Chakicherla A , Larimer FW , Richardson PM , Coleman MA , Wood AP , Kelly DP
Ref : Journal of Bacteriology , 188 :1473 , 2006
Abstract : Beller_2006_J.Bacteriol_188_1473
ESTHER : Beller_2006_J.Bacteriol_188_1473
PubMedSearch : Beller_2006_J.Bacteriol_188_1473
PubMedID: 16452431
Gene_locus related to this paper: thida-q3sez3 , thida-q3sfi8 , thida-q3sfs9 , thida-q3sgm5 , thida-q3sh03 , thida-q3sij1 , thida-q3sja9 , thida-q3sk45 , thida-q3slh7 , thida-q3slx8

Title : The genome of the obligately intracellular bacterium Ehrlichia canis reveals themes of complex membrane structure and immune evasion strategies - Mavromatis_2006_J.Bacteriol_188_4015
Author(s) : Mavromatis K , Doyle CK , Lykidis A , Ivanova N , Francino MP , Chain P , Shin M , Malfatti S , Larimer F , Copeland A , Detter JC , Land M , Richardson PM , Yu XJ , Walker DH , McBride JW , Kyrpides NC
Ref : Journal of Bacteriology , 188 :4015 , 2006
Abstract : Mavromatis_2006_J.Bacteriol_188_4015
ESTHER : Mavromatis_2006_J.Bacteriol_188_4015
PubMedSearch : Mavromatis_2006_J.Bacteriol_188_4015
PubMedID: 16707693
Gene_locus related to this paper: ehrcj-q3ys50

Title : Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum - Hallam_2006_Proc.Natl.Acad.Sci.U.S.A_103_18296
Author(s) : Hallam SJ , Konstantinidis KT , Putnam N , Schleper C , Watanabe Y , Sugahara J , Preston C , de la Torre J , Richardson PM , DeLong EF
Ref : Proc Natl Acad Sci U S A , 103 :18296 , 2006
Abstract : Hallam_2006_Proc.Natl.Acad.Sci.U.S.A_103_18296
ESTHER : Hallam_2006_Proc.Natl.Acad.Sci.U.S.A_103_18296
PubMedSearch : Hallam_2006_Proc.Natl.Acad.Sci.U.S.A_103_18296
PubMedID: 17114289
Gene_locus related to this paper: censy-a0rvz5 , censy-a0rx82 , censy-a0rx85 , censy-a0rxe4

Title : Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000 - Feil_2005_Proc.Natl.Acad.Sci.U.S.A_102_11064
Author(s) : Feil H , Feil WS , Chain P , Larimer F , DiBartolo G , Copeland A , Lykidis A , Trong S , Nolan M , Goltsman E , Thiel J , Malfatti S , Loper JE , Lapidus A , Detter JC , Land M , Richardson PM , Kyrpides NC , Ivanova N , Lindow SE
Ref : Proc Natl Acad Sci U S A , 102 :11064 , 2005
Abstract : Feil_2005_Proc.Natl.Acad.Sci.U.S.A_102_11064
ESTHER : Feil_2005_Proc.Natl.Acad.Sci.U.S.A_102_11064
PubMedSearch : Feil_2005_Proc.Natl.Acad.Sci.U.S.A_102_11064
PubMedID: 16043691
Gene_locus related to this paper: psesm-METX , psesm-q87y20 , psesm-q889k3 , psesy-PIP , psesy-PSPTO2134 , psesy-PSPTO3135 , psesy-SYLD , psesy-SYPC , psesy-SYRE , pseu2-q4zlt8 , pseu2-q4zm40 , pseu2-q4zmb0 , pseu2-q4zmc0 , pseu2-q4zmh2 , pseu2-q4zmw4 , pseu2-q4zn59 , pseu2-q4znb2 , pseu2-q4znm5 , pseu2-q4zpb0 , pseu2-q4zph7 , pseu2-q4zpw6 , pseu2-q4zq18 , pseu2-q4zq29 , pseu2-q4zqk3 , pseu2-q4zr46 , pseu2-q4zrk3 , pseu2-q4zrq0 , pseu2-q4zrr1 , pseu2-q4zrt9 , pseu2-q4zs33 , pseu2-q4zs84 , pseu2-q4zs88 , pseu2-q4zsh3 , pseu2-q4zt45 , pseu2-q4zt74 , pseu2-q4zta6 , pseu2-q4zte9 , pseu2-q4zts5 , pseu2-q4zun8 , pseu2-q4zuv2 , pseu2-q4zuw1 , pseu2-q4zv19 , pseu2-q4zv57 , pseu2-q4zvi1 , pseu2-q4zvi2 , pseu2-q4zw50 , pseu2-q4zwq3 , pseu2-q4zwv7 , pseu2-q4zxj5 , pseu2-q4zxs0 , pseu2-q4zz02 , pseu2-q4zzm1 , pseu2-q4zzm4 , pseu2-q500r7 , pseu2-q4zqx8

Title : Community structure and metabolism through reconstruction of microbial genomes from the environment - Tyson_2004_Nature_428_37
Author(s) : Tyson GW , Chapman J , Hugenholtz P , Allen EE , Ram RJ , Richardson PM , Solovyev VV , Rubin EM , Rokhsar DS , Banfield JF
Ref : Nature , 428 :37 , 2004
Abstract : Tyson_2004_Nature_428_37
ESTHER : Tyson_2004_Nature_428_37
PubMedSearch : Tyson_2004_Nature_428_37
PubMedID: 14961025

Title : Reverse methanogenesis: testing the hypothesis with environmental genomics - Hallam_2004_Science_305_1457
Author(s) : Hallam SJ , Putnam N , Preston CM , Detter JC , Rokhsar D , Richardson PM , DeLong EF
Ref : Science , 305 :1457 , 2004
Abstract : Hallam_2004_Science_305_1457
ESTHER : Hallam_2004_Science_305_1457
PubMedSearch : Hallam_2004_Science_305_1457
PubMedID: 15353801
Gene_locus related to this paper: 9arch-q64ad0 , 9arch-q64bc9 , 9arch-q648n1

Title : Differentiation effects of ciliary neurotrophic factor on human neuroblastoma cells - Lawrance_1995_J.Neurochem_64_1483
Author(s) : Lawrance G , Rylett RJ , Richardson PM , Dunn RJ , Dow KE , Riopelle RJ
Ref : Journal of Neurochemistry , 64 :1483 , 1995
Abstract : Lawrance_1995_J.Neurochem_64_1483
ESTHER : Lawrance_1995_J.Neurochem_64_1483
PubMedSearch : Lawrance_1995_J.Neurochem_64_1483
PubMedID: 7891074