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| Title : Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States - Sanjar_2014_Genome.Announc_2_e01120 |
| Author(s) : Sanjar F , Hazen TH , Shah SM , Koenig SS , Agrawal S , Daugherty S , Sadzewicz L , Tallon LJ , Mammel MK , Feng P , Soderlund R , Tarr PI , Debroy C , Dudley EG , Cebula TA , Ravel J , Fraser CM , Rasko DA , Eppinger M |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Sanjar_2014_Genome.Announc_2_e01120 |
| ESTHER : Sanjar_2014_Genome.Announc_2_e01120 |
| PubMedSearch : Sanjar_2014_Genome.Announc_2_e01120 |
| PubMedID: 24407635 |
| Gene_locus related to this paper: ecoli-fes , ecoli-ycfp , ecoli-ypt1 , ecoli-yqia , ecoli-Z1930 |
| Title : Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains - Eppinger_2013_Genome.Announc_1_e0013412 |
| Author(s) : Eppinger M , Daugherty S , Agrawal S , Galens K , Sengamalay N , Sadzewicz L , Tallon L , Cebula TA , Mammel MK , Feng P , Soderlund R , Tarr PI , Debroy C , Dudley EG , Fraser CM , Ravel J |
| Ref : Genome Announc , 1 :e0013412 , 2013 |
| Abstract : Eppinger_2013_Genome.Announc_1_e0013412 |
| ESTHER : Eppinger_2013_Genome.Announc_1_e0013412 |
| PubMedSearch : Eppinger_2013_Genome.Announc_1_e0013412 |
| PubMedID: 23516226 |
| Gene_locus related to this paper: ecoli-fes , ecoli-estX , ecoli-ycfp , ecoli-yhet , ecoli-ypt1 , ecoli-yqia , ecoli-Z1341 , ecoli-Z1930 |
| Title : Whole-genome sequences of Bacillus subtilis and close relatives - Earl_2012_J.Bacteriol_194_2378 |
| Author(s) : Earl AM , Eppinger M , Fricke WF , Rosovitz MJ , Rasko DA , Daugherty S , Losick R , Kolter R , Ravel J |
| Ref : Journal of Bacteriology , 194 :2378 , 2012 |
| Abstract : Earl_2012_J.Bacteriol_194_2378 |
| ESTHER : Earl_2012_J.Bacteriol_194_2378 |
| PubMedSearch : Earl_2012_J.Bacteriol_194_2378 |
| PubMedID: 22493193 |
| Gene_locus related to this paper: bacsu-YBAC , bacsu-ytxm , bacsu-YVAK |
| Title : Biosynthesis of the Apoptolidins in Nocardiopsis sp. FU 40 - Du_2011_Tetrahedron_67_6568 |
| Author(s) : Du Y , Derewacz DK , Deguire SM , Teske J , Ravel J , Sulikowski GA , Bachmann BO |
| Ref : Tetrahedron , 67 :6568 , 2011 |
| Abstract : Du_2011_Tetrahedron_67_6568 |
| ESTHER : Du_2011_Tetrahedron_67_6568 |
| PubMedSearch : Du_2011_Tetrahedron_67_6568 |
| PubMedID: 21869849 |
| Title : Genome signatures of Escherichia coli O157:H7 isolates from the bovine host reservoir - Eppinger_2011_Appl.Environ.Microbiol_77_2916 |
| Author(s) : Eppinger M , Mammel MK , Leclerc JE , Ravel J , Cebula TA |
| Ref : Applied Environmental Microbiology , 77 :2916 , 2011 |
| Abstract : Eppinger_2011_Appl.Environ.Microbiol_77_2916 |
| ESTHER : Eppinger_2011_Appl.Environ.Microbiol_77_2916 |
| PubMedSearch : Eppinger_2011_Appl.Environ.Microbiol_77_2916 |
| PubMedID: 21421787 |
| Title : Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution - Fricke_2011_J.Bacteriol_193_3556 |
| Author(s) : Fricke WF , Mammel MK , McDermott PF , Tartera C , White DG , Leclerc JE , Ravel J , Cebula TA |
| Ref : Journal of Bacteriology , 193 :3556 , 2011 |
| Abstract : Fricke_2011_J.Bacteriol_193_3556 |
| ESTHER : Fricke_2011_J.Bacteriol_193_3556 |
| PubMedSearch : Fricke_2011_J.Bacteriol_193_3556 |
| PubMedID: 21602358 |
| Gene_locus related to this paper: salen-OPDB , salty-AES , salty-DLHH , salty-ENTF , salty-PLDB , salty-STM4506 , salty-STY3846 , salty-yafa , salty-YBFF , salty-ycfp , salty-YHET , salty-YQIA |
| Title : Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium - Eppinger_2010_J.Bacteriol_192_1685 |
| Author(s) : Eppinger M , Worsham PL , Nikolich MP , Riley DR , Sebastian Y , Mou S , Achtman M , Lindler LE , Ravel J |
| Ref : Journal of Bacteriology , 192 :1685 , 2010 |
| Abstract : Eppinger_2010_J.Bacteriol_192_1685 |
| ESTHER : Eppinger_2010_J.Bacteriol_192_1685 |
| PubMedSearch : Eppinger_2010_J.Bacteriol_192_1685 |
| PubMedID: 20061468 |
| Gene_locus related to this paper: yerpe-BIOH , yerpe-dlhh , yerpe-PIP , yerpe-PLDB , yerpe-PTRB , yerpe-Y0507 , yerpe-y1616 , yerpe-y3224 , yerpe-YPLA , yerpe-YPO0180 , yerpe-YPO0667 , yerpe-YPO0986 , yerpe-YPO1501 , yerpe-YPO1997 , yerpe-YPO2526 , yerpe-YPO2814 |
| Title : Draft genome sequences of Yersinia pestis isolates from natural foci of endemic plague in China - Eppinger_2009_J.Bacteriol_191_7628 |
| Author(s) : Eppinger M , Guo Z , Sebastian Y , Song Y , Lindler LE , Yang R , Ravel J |
| Ref : Journal of Bacteriology , 191 :7628 , 2009 |
| Abstract : Eppinger_2009_J.Bacteriol_191_7628 |
| ESTHER : Eppinger_2009_J.Bacteriol_191_7628 |
| PubMedSearch : Eppinger_2009_J.Bacteriol_191_7628 |
| PubMedID: 19820101 |
| Gene_locus related to this paper: yerpe-BIOH , yerpe-dlhh , yerpe-PIP , yerpe-PLDB , yerpe-PTRB , yerpe-Y0507 , yerpe-y3224 , yerpe-YPLA , yerpe-YPO0180 , yerpe-YPO0667 , yerpe-YPO0773 , yerpe-YPO0986 , yerpe-YPO1501 , yerpe-YPO1997 , yerpe-YPO2526 , yerpe-YPO2814 |
| Title : Evidence that human Chlamydia pneumoniae was zoonotically acquired - Myers_2009_J.Bacteriol_191_7225 |
| Author(s) : Myers GS , Mathews SA , Eppinger M , Mitchell C , O'Brien KK , White OR , Benahmed F , Brunham RC , Read TD , Ravel J , Bavoil PM , Timms P |
| Ref : Journal of Bacteriology , 191 :7225 , 2009 |
| Abstract : Myers_2009_J.Bacteriol_191_7225 |
| ESTHER : Myers_2009_J.Bacteriol_191_7225 |
| PubMedSearch : Myers_2009_J.Bacteriol_191_7225 |
| PubMedID: 19749045 |
| Gene_locus related to this paper: chlpn-CPJ0342 , chlpn-CPN0271 , chlpn-q9k1u7 |
| Title : Antimicrobial resistance-conferring plasmids with similarity to virulence plasmids from avian pathogenic Escherichia coli strains in Salmonella enterica serovar Kentucky isolates from poultry - Fricke_2009_Appl.Environ.Microbiol_75_5963 |
| Author(s) : Fricke WF , McDermott PF , Mammel MK , Zhao S , Johnson TJ , Rasko DA , Fedorka-Cray PJ , Pedroso A , Whichard JM , Leclerc JE , White DG , Cebula TA , Ravel J |
| Ref : Applied Environmental Microbiology , 75 :5963 , 2009 |
| Abstract : Fricke_2009_Appl.Environ.Microbiol_75_5963 |
| ESTHER : Fricke_2009_Appl.Environ.Microbiol_75_5963 |
| PubMedSearch : Fricke_2009_Appl.Environ.Microbiol_75_5963 |
| PubMedID: 19648374 |
| Gene_locus related to this paper: ecoli-IROD , shidy-q67dv1 |
| Title : The complete genome sequence of Bacillus anthracis Ames Ancestor - Ravel_2009_J.Bacteriol_191_445 |
| Author(s) : Ravel J , Jiang L , Stanley ST , Wilson MR , Decker RS , Read TD , Worsham P , Keim PS , Salzberg SL , Fraser-Liggett CM , Rasko DA |
| Ref : Journal of Bacteriology , 191 :445 , 2009 |
| Abstract : Ravel_2009_J.Bacteriol_191_445 |
| ESTHER : Ravel_2009_J.Bacteriol_191_445 |
| PubMedSearch : Ravel_2009_J.Bacteriol_191_445 |
| PubMedID: 18952800 |
| Gene_locus related to this paper: bacan-BA1866 , bacan-BA3703 , bacan-BA3805 , bacan-DHBF , bacce-BC0192 , bacce-BC1788 , bacce-BC4862 , bacce-PHAC , bacan-a0a6l7h3w8 |
| Title : Comparative genomics of the IncA\/C multidrug resistance plasmid family - Fricke_2009_J.Bacteriol_191_4750 |
| Author(s) : Fricke WF , Welch TJ , McDermott PF , Mammel MK , Leclerc JE , White DG , Cebula TA , Ravel J |
| Ref : Journal of Bacteriology , 191 :4750 , 2009 |
| Abstract : Fricke_2009_J.Bacteriol_191_4750 |
| ESTHER : Fricke_2009_J.Bacteriol_191_4750 |
| PubMedSearch : Fricke_2009_J.Bacteriol_191_4750 |
| PubMedID: 19482926 |
| Title : Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5 - Fricke_2008_J.Bacteriol_190_6779 |
| Author(s) : Fricke WF , Wright MS , Lindell AH , Harkins DM , Baker-Austin C , Ravel J , Stepanauskas R |
| Ref : Journal of Bacteriology , 190 :6779 , 2008 |
| Abstract : Fricke_2008_J.Bacteriol_190_6779 |
| ESTHER : Fricke_2008_J.Bacteriol_190_6779 |
| PubMedSearch : Fricke_2008_J.Bacteriol_190_6779 |
| PubMedID: 18708504 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-estX , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-YfhR , ecosm-b1lhu2 |
| Title : The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates - Rasko_2008_J.Bacteriol_190_6881 |
| Author(s) : Rasko DA , Rosovitz MJ , Myers GS , Mongodin EF , Fricke WF , Gajer P , Crabtree J , Sebaihia M , Thomson NR , Chaudhuri R , Henderson IR , Sperandio V , Ravel J |
| Ref : Journal of Bacteriology , 190 :6881 , 2008 |
| Abstract : Rasko_2008_J.Bacteriol_190_6881 |
| ESTHER : Rasko_2008_J.Bacteriol_190_6881 |
| PubMedSearch : Rasko_2008_J.Bacteriol_190_6881 |
| PubMedID: 18676672 |
| Gene_locus related to this paper: ecoli-Aes , ecoli-rutD , ecoli-bioh , ecoli-C4836 , ecoli-dlhh , ecoli-entf , ecoli-fes , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-yeiG , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yiel , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-ypt1 , ecoli-yqia , ecoli-Z2445 , ecoli-YfhR |
| Title : Complete sequence analysis of novel plasmids from emetic and periodontal Bacillus cereus isolates reveals a common evolutionary history among the B. cereus-group plasmids, including Bacillus anthracis pXO1 - Rasko_2007_J.Bacteriol_189_52 |
| Author(s) : Rasko DA , Rosovitz MJ , Okstad OA , Fouts DE , Jiang L , Cer RZ , Kolsto AB , Gill SR , Ravel J |
| Ref : Journal of Bacteriology , 189 :52 , 2007 |
| Abstract : Rasko_2007_J.Bacteriol_189_52 |
| ESTHER : Rasko_2007_J.Bacteriol_189_52 |
| PubMedSearch : Rasko_2007_J.Bacteriol_189_52 |
| PubMedID: 17041058 |
| Gene_locus related to this paper: bacce-c2zyv1 , bacce-q20cj0 , bacce-q20cj2 , bacti-q3elq7 |
| Title : The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever - Eppinger_2007_PLoS.Genet_3_e142 |
| Author(s) : Eppinger M , Rosovitz MJ , Fricke WF , Rasko DA , Kokorina G , Fayolle C , Lindler LE , Carniel E , Ravel J |
| Ref : PLoS Genet , 3 :e142 , 2007 |
| Abstract : Eppinger_2007_PLoS.Genet_3_e142 |
| ESTHER : Eppinger_2007_PLoS.Genet_3_e142 |
| PubMedSearch : Eppinger_2007_PLoS.Genet_3_e142 |
| PubMedID: 17784789 |
| Gene_locus related to this paper: yerpe-BIOH , yerpe-dlhh , yerpe-PIP , yerpe-PTRB , yerpe-Y0507 , yerpe-y1616 , yerpe-y3224 , yerpe-YPLA , yerpe-YPO0180 , yerpe-YPO0667 , yerpe-YPO0773 , yerpe-YPO0986 , yerpe-YPO1501 , yerpe-YPO1997 , yerpe-YPO2526 , yerpe-YPO2814 |
| Title : Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens - Myers_2006_Genome.Res_16_1031 |
| Author(s) : Myers GS , Rasko DA , Cheung JK , Ravel J , Seshadri R , DeBoy RT , Ren Q , Varga J , Awad MM , Brinkac LM , Daugherty SC , Haft DH , Dodson RJ , Madupu R , Nelson WC , Rosovitz MJ , Sullivan SA , Khouri H , Dimitrov GI , Watkins KL , Mulligan S , Benton J , Radune D , Fisher DJ , Atkins HS , Hiscox T , Jost BH , Billington SJ , Songer JG , McClane BA , Titball RW , Rood JI , Melville SB , Paulsen IT |
| Ref : Genome Res , 16 :1031 , 2006 |
| Abstract : Myers_2006_Genome.Res_16_1031 |
| ESTHER : Myers_2006_Genome.Res_16_1031 |
| PubMedSearch : Myers_2006_Genome.Res_16_1031 |
| PubMedID: 16825665 |
| Gene_locus related to this paper: clope-CPE0307 , clope-CPE0432 , clope-CPE1581 , clope-CPE1596 , clope-CPE1989 , clope-CPE2231 , clope-lipa , clope-LIPB , clope-PLDB |
| Title : Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species - Fouts_2005_PLoS.Biol_3_e15 |
| Author(s) : Fouts DE , Mongodin EF , Mandrell RE , Miller WG , Rasko DA , Ravel J , Brinkac LM , DeBoy RT , Parker CT , Daugherty SC , Dodson RJ , Durkin AS , Madupu R , Sullivan SA , Shetty JU , Ayodeji MA , Shvartsbeyn A , Schatz MC , Badger JH , Fraser CM , Nelson KE |
| Ref : PLoS Biol , 3 :e15 , 2005 |
| Abstract : Fouts_2005_PLoS.Biol_3_e15 |
| ESTHER : Fouts_2005_PLoS.Biol_3_e15 |
| PubMedSearch : Fouts_2005_PLoS.Biol_3_e15 |
| PubMedID: 15660156 |
| Gene_locus related to this paper: camje-CJ0796C , camjr-q5ht69 , camjr-q5ht95 , camjr-q5huc7 , camjr-q5hwg6 , camju-a3yll6 |
| Title : The biosynthetic gene cluster for a monocyclic beta-lactam antibiotic, nocardicin A - Gunsior_2004_Chem.Biol_11_927 |
| Author(s) : Gunsior M , Breazeale SD , Lind AJ , Ravel J , Janc JW , Townsend CA |
| Ref : Chemical Biology , 11 :927 , 2004 |
| Abstract : Gunsior_2004_Chem.Biol_11_927 |
| ESTHER : Gunsior_2004_Chem.Biol_11_927 |
| PubMedSearch : Gunsior_2004_Chem.Biol_11_927 |
| PubMedID: 15271351 |
| Gene_locus related to this paper: 9noca-q5j1q6 |
| Title : Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath) - Ward_2004_PLoS.Biol_2_e303 |
| Author(s) : Ward N , Larsen O , Sakwa J , Bruseth L , Khouri H , Durkin AS , Dimitrov G , Jiang L , Scanlan D , Kang KH , Lewis M , Nelson KE , Methe B , Wu M , Heidelberg JF , Paulsen IT , Fouts D , Ravel J , Tettelin H , Ren Q , Read T , DeBoy RT , Seshadri R , Salzberg SL , Jensen HB , Birkeland NK , Nelson WC , Dodson RJ , Grindhaug SH , Holt I , Eidhammer I , Jonasen I , Vanaken S , Utterback T , Feldblyum TV , Fraser CM , Lillehaug JR , Eisen JA |
| Ref : PLoS Biol , 2 :e303 , 2004 |
| Abstract : Ward_2004_PLoS.Biol_2_e303 |
| ESTHER : Ward_2004_PLoS.Biol_2_e303 |
| PubMedSearch : Ward_2004_PLoS.Biol_2_e303 |
| PubMedID: 15383840 |
| Gene_locus related to this paper: metca-q60a38 , metca-q60bu6 , metca-q60cn0 , metca-q605j8 , metca-q606x9 , metca-q607f7 , metca-q607m2 , metca-q609v0 |
| Title : Identification of new, conserved, non-ribosomal peptide synthetases from fluorescent pseudomonads involved in the biosynthesis of the siderophore pyoverdine - Mossialos_2002_Mol.Microbiol_45_1673 |
| Author(s) : Mossialos D , Ochsner U , Baysse C , Chablain P , Pirnay JP , Koedam N , Budzikiewicz H , Fernandez DU , Schafer M , Ravel J , Cornelis P |
| Ref : Molecular Microbiology , 45 :1673 , 2002 |
| Abstract : Mossialos_2002_Mol.Microbiol_45_1673 |
| ESTHER : Mossialos_2002_Mol.Microbiol_45_1673 |
| PubMedSearch : Mossialos_2002_Mol.Microbiol_45_1673 |
| PubMedID: 12354233 |
| Gene_locus related to this paper: psefl-Q8RQA8 |