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References (16)

Title : Massive expansion of Ubiquitination-related gene families within the Chlamydiae - Domman_2014_Mol.Biol.Evol_31_2890
Author(s) : Domman D , Collingro A , Lagkouvardos I , Gehre L , Weinmaier T , Rattei T , Subtil A , Horn M
Ref : Molecular Biology Evolution , 31 :2890 , 2014
Abstract : Domman_2014_Mol.Biol.Evol_31_2890
ESTHER : Domman_2014_Mol.Biol.Evol_31_2890
PubMedSearch : Domman_2014_Mol.Biol.Evol_31_2890
PubMedID: 25069652
Gene_locus related to this paper: 9chla-a0a0c1h3n5 , parav-f8kzh9

Title : Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling - Clarke_2013_Genome.Biol_14_R11
Author(s) : Clarke M , Lohan AJ , Liu B , Lagkouvardos I , Roy S , Zafar N , Bertelli C , Schilde C , Kianianmomeni A , Burglin TR , Frech C , Turcotte B , Kopec KO , Synnott JM , Choo C , Paponov I , Finkler A , Heng Tan CS , Hutchins AP , Weinmeier T , Rattei T , Chu JS , Gimenez G , Irimia M , Rigden DJ , Fitzpatrick DA , Lorenzo-Morales J , Bateman A , Chiu CH , Tang P , Hegemann P , Fromm H , Raoult D , Greub G , Miranda-Saavedra D , Chen N , Nash P , Ginger ML , Horn M , Schaap P , Caler L , Loftus BJ
Ref : Genome Biol , 14 :R11 , 2013
Abstract : Clarke_2013_Genome.Biol_14_R11
ESTHER : Clarke_2013_Genome.Biol_14_R11
PubMedSearch : Clarke_2013_Genome.Biol_14_R11
PubMedID: 23375108
Gene_locus related to this paper: acaca-l8gel0 , acaca-l8gri8 , acaca-l8h8h3 , acaca-l8gtb6 , acaca-l8gr27 , acaca-l8h9l6 , acaca-l8hhi6 , acaca-l8grd3 , acaca-l8gju3 , acaca-l8h8t7 , acaca-l8h0a7

Title : The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer - Lucker_2013_Front.Microbiol_4_27
Author(s) : Lucker S , Nowka B , Rattei T , Spieck E , Daims H
Ref : Front Microbiol , 4 :27 , 2013
Abstract : Lucker_2013_Front.Microbiol_4_27
ESTHER : Lucker_2013_Front.Microbiol_4_27
PubMedSearch : Lucker_2013_Front.Microbiol_4_27
PubMedID: 23439773
Gene_locus related to this paper: 9bact-m1z099 , nitg3-m1z2n2

Title : Complete genome sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T - Pester_2012_J.Bacteriol_194_6300
Author(s) : Pester M , Brambilla E , Alazard D , Rattei T , Weinmaier T , Han J , Lucas S , Lapidus A , Cheng JF , Goodwin L , Pitluck S , Peters L , Ovchinnikova G , Teshima H , Detter JC , Han CS , Tapia R , Land ML , Hauser L , Kyrpides NC , Ivanova NN , Pagani I , Huntmann M , Wei CL , Davenport KW , Daligault H , Chain PS , Chen A , Mavromatis K , Markowitz V , Szeto E , Mikhailova N , Pati A , Wagner M , Woyke T , Ollivier B , Klenk HP , Spring S , Loy A
Ref : Journal of Bacteriology , 194 :6300 , 2012
Abstract : Pester_2012_J.Bacteriol_194_6300
ESTHER : Pester_2012_J.Bacteriol_194_6300
PubMedSearch : Pester_2012_J.Bacteriol_194_6300
PubMedID: 23105050
Gene_locus related to this paper: desaj-i4dc82 , desmd-j7j1v2 , desod-g7wg97 , desaj-i4d5q8

Title : The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations - Spang_2012_Environ.Microbiol_14_3122
Author(s) : Spang A , Poehlein A , Offre P , Zumbragel S , Haider S , Rychlik N , Nowka B , Schmeisser C , Lebedeva EV , Rattei T , Bohm C , Schmid M , Galushko A , Hatzenpichler R , Weinmaier T , Daniel R , Schleper C , Spieck E , Streit WR , Wagner M
Ref : Environ Microbiol , 14 :3122 , 2012
Abstract : Spang_2012_Environ.Microbiol_14_3122
ESTHER : Spang_2012_Environ.Microbiol_14_3122
PubMedSearch : Spang_2012_Environ.Microbiol_14_3122
PubMedID: 23057602
Gene_locus related to this paper: nitgg-k0im51

Title : Draft genome sequence of Lactobacillus casei W56 - Hochwind_2012_J.Bacteriol_194_6638
Author(s) : Hochwind K , Weinmaier T , Schmid M , van Hemert S , Hartmann A , Rattei T , Rothballer M
Ref : Journal of Bacteriology , 194 :6638 , 2012
Abstract : Hochwind_2012_J.Bacteriol_194_6638
ESTHER : Hochwind_2012_J.Bacteriol_194_6638
PubMedSearch : Hochwind_2012_J.Bacteriol_194_6638
PubMedID: 23144392
Gene_locus related to this paper: laccb-b3wcx2 , lacrh-pepr , lacca-b5qt93 , lacca-k0n1x0 , lacpa-s2ter8 , lacpa-s2rz88

Title : Complete genome sequence of Cronobacter turicensis LMG 23827, a food-borne pathogen causing deaths in neonates - Stephan_2011_J.Bacteriol_193_309
Author(s) : Stephan R , Lehner A , Tischler P , Rattei T
Ref : Journal of Bacteriology , 193 :309 , 2011
Abstract : Stephan_2011_J.Bacteriol_193_309
ESTHER : Stephan_2011_J.Bacteriol_193_309
PubMedSearch : Stephan_2011_J.Bacteriol_193_309
PubMedID: 21037008
Gene_locus related to this paper: crotz-rutd

Title : Genomic insights into the metabolic potential of the polycyclic aromatic hydrocarbon degrading sulfate-reducing Deltaproteobacterium N47 - Bergmann_2011_Environ.Microbiol_13_1125
Author(s) : Bergmann F , Selesi D , Weinmaier T , Tischler P , Rattei T , Meckenstock RU
Ref : Environ Microbiol , 13 :1125 , 2011
Abstract : Bergmann_2011_Environ.Microbiol_13_1125
ESTHER : Bergmann_2011_Environ.Microbiol_13_1125
PubMedSearch : Bergmann_2011_Environ.Microbiol_13_1125
PubMedID: 21176053
Gene_locus related to this paper: 9delt-e1ygc0

Title : Shotgun sequencing of Yersinia enterocolitica strain W22703 (biotype 2, serotype O:9): genomic evidence for oscillation between invertebrates and mammals - Fuchs_2011_BMC.Genomics_12_168
Author(s) : Fuchs TM , Brandt K , Starke M , Rattei T
Ref : BMC Genomics , 12 :168 , 2011
Abstract : Fuchs_2011_BMC.Genomics_12_168
ESTHER : Fuchs_2011_BMC.Genomics_12_168
PubMedSearch : Fuchs_2011_BMC.Genomics_12_168
PubMedID: 21453472
Gene_locus related to this paper: yere8-menh , yerbe-c4rym7 , yeren-k1bwy7

Title : Unity in variety--the pan-genome of the Chlamydiae - Collingro_2011_Mol.Biol.Evol_28_3253
Author(s) : Collingro A , Tischler P , Weinmaier T , Penz T , Heinz E , Brunham RC , Read TD , Bavoil PM , Sachse K , Kahane S , Friedman MG , Rattei T , Myers GS , Horn M
Ref : Molecular Biology Evolution , 28 :3253 , 2011
Abstract : Collingro_2011_Mol.Biol.Evol_28_3253
ESTHER : Collingro_2011_Mol.Biol.Evol_28_3253
PubMedSearch : Collingro_2011_Mol.Biol.Evol_28_3253
PubMedID: 21690563
Gene_locus related to this paper: parav-f8l1h0 , simnz-f8l8s3 , parav-f8kzh9

Title : Genome sequencing and analysis of the model grass Brachypodium distachyon. -
Author(s) : Vogel JP , Garvin DF , Mockler TC , Schmutz J , Rokhsar D , Bevan MW , Barry K , Lucas S , Harmon-Smith M , Lail K , Tice H , Grimwood J , McKenzie N , Huo N , Gu YQ , Lazo GR , Anderson OD , You FM , Luo MC , Dvorak J , Wright J , Febrer M , Idziak D , Hasterok R , Lindquist E , Wang M , Fox SE , Priest HD , Filichkin SA , Givan SA , Bryant DW , Chang JH , Wu H , Wu W , Hsia AP , Schnable PS , Kalyanaraman A , Barbazuk B , Michael TP , Hazen SP , Bragg JN , Laudencia-Chingcuanco D , Weng Y , Haberer G , Spannagl M , Mayer K , Rattei T , Mitros T , Lee SJ , Rose JK , Mueller LA , York TL , Wicker T , Buchmann JP , Tanskanen J , Schulman AH , Gundlach H , Bevan M , de Oliveira AC , Maia Lda C , Belknap W , Jiang N , Lai J , Zhu L , Ma J , Sun C , Pritham E , Salse J , Murat F , Abrouk M , Bruggmann R , Messing J , Fahlgren N , Sullivan CM , Carrington JC , Chapman EJ , May GD , Zhai J , Ganssmann M , Gurazada SG , German M , Meyers BC , Green PJ , Tyler L , Wu J , Thomson J , Chen S , Scheller HV , Harholt J , Ulvskov P , Kimbrel JA , Bartley LE , Cao P , Jung KH , Sharma MK , Vega-Sanchez M , Ronald P , Dardick CD , De Bodt S , Verelst W , Inz D , Heese M , Schnittger A , Yang X , Kalluri UC , Tuskan GA , Hua Z , Vierstra RD , Cui Y , Ouyang S , Sun Q , Liu Z , Yilmaz A , Grotewold E , Sibout R , Hematy K , Mouille G , Hofte H , Michael T , Pelloux J , O'Connor D , Schnable J , Rowe S , Harmon F , Cass CL , Sedbrook JC , Byrne ME , Walsh S , Higgins J , Li P , Brutnell T , Unver T , Budak H , Belcram H , Charles M , Chalhoub B , Baxter I
Ref : Nature , 463 :763 , 2010
PubMedID: 20148030
Gene_locus related to this paper: bradi-i1grm0 , bradi-i1gx82 , bradi-i1hb80 , bradi-i1hkv6 , bradi-i1hpu6 , bradi-i1i3e4 , bradi-i1i9i0 , bradi-i1i435 , bradi-i1ix93 , bradi-i1gsk6 , bradi-i1hk44 , bradi-i1hk45 , bradi-i1hnk7 , bradi-i1hsd5 , bradi-i1huy4 , bradi-i1huy9 , bradi-i1huz0 , bradi-i1gxx9 , bradi-i1hl25 , bradi-i1hcw7 , bradi-i1hyv6 , bradi-i1hyb5 , bradi-i1hvr8 , bradi-i1hmu2 , bradi-i1hf05 , bradi-i1gry7 , bradi-i1hf06 , bradi-i1i5z8 , bradi-i1icy3 , bradi-i1j1h3 , bradi-i1h1e3 , bradi-i1hvr9 , bradi-a0a0q3r7i7 , bradi-i1i377 , bradi-i1hjg5 , bradi-i1h3i9 , bradi-i1gsg5 , bradi-a0a0q3mph9 , bradi-i1h682 , bradi-a0a0q3lc91 , bradi-i1gx49 , bradi-i1i839 , bradi-a0a2k2dsp5 , bradi-i1gsb5

Title : A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria - Lucker_2010_Proc.Natl.Acad.Sci.U.S.A_107_13479
Author(s) : Lucker S , Wagner M , Maixner F , Pelletier E , Koch H , Vacherie B , Rattei T , Damste JS , Spieck E , Le Paslier D , Daims H
Ref : Proc Natl Acad Sci U S A , 107 :13479 , 2010
Abstract : Lucker_2010_Proc.Natl.Acad.Sci.U.S.A_107_13479
ESTHER : Lucker_2010_Proc.Natl.Acad.Sci.U.S.A_107_13479
PubMedSearch : Lucker_2010_Proc.Natl.Acad.Sci.U.S.A_107_13479
PubMedID: 20624973
Gene_locus related to this paper: 9bact-d8pbw6 , 9bact-d8pbw8 , 9bact-d8pch8 , 9bact-d8pdl3 , 9bact-d8pej0

Title : Deciphering the evolution and metabolism of an anammox bacterium from a community genome - Strous_2006_Nature_440_790
Author(s) : Strous M , Pelletier E , Mangenot S , Rattei T , Lehner A , Taylor MW , Horn M , Daims H , Bartol-Mavel D , Wincker P , Barbe V , Fonknechten N , Vallenet D , Segurens B , Schenowitz-Truong C , Medigue C , Collingro A , Snel B , Dutilh BE , Op den Camp HJ , van der Drift C , Cirpus I , van de Pas-Schoonen KT , Harhangi HR , van Niftrik L , Schmid M , Keltjens J , van de Vossenberg J , Kartal B , Meier H , Frishman D , Huynen MA , Mewes HW , Weissenbach J , Jetten MS , Wagner M , Le Paslier D
Ref : Nature , 440 :790 , 2006
Abstract : Strous_2006_Nature_440_790
ESTHER : Strous_2006_Nature_440_790
PubMedSearch : Strous_2006_Nature_440_790
PubMedID: 16598256
Gene_locus related to this paper: 9bact-q1py93 , 9bact-q1q3k9 , 9bact-q1q414

Title : Illuminating the evolutionary history of chlamydiae - Horn_2004_Science_304_728
Author(s) : Horn M , Collingro A , Schmitz-Esser S , Beier CL , Purkhold U , Fartmann B , Brandt P , Nyakatura GJ , Droege M , Frishman D , Rattei T , Mewes HW , Wagner M
Ref : Science , 304 :728 , 2004
Abstract : Horn_2004_Science_304_728
ESTHER : Horn_2004_Science_304_728
PubMedSearch : Horn_2004_Science_304_728
PubMedID: 15073324
Gene_locus related to this paper: paruw-q6m9q5 , paruw-q6m9q7 , paruw-q6mcu6 , paruw-q6mev0

Title : The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments - Rabus_2004_Environ.Microbiol_6_887
Author(s) : Rabus R , Ruepp A , Frickey T , Rattei T , Fartmann B , Stark M , Bauer M , Zibat A , Lombardot T , Becker I , Amann J , Gellner K , Teeling H , Leuschner WD , Glockner FO , Lupas AN , Amann R , Klenk HP
Ref : Environ Microbiol , 6 :887 , 2004
Abstract : Rabus_2004_Environ.Microbiol_6_887
ESTHER : Rabus_2004_Environ.Microbiol_6_887
PubMedSearch : Rabus_2004_Environ.Microbiol_6_887
PubMedID: 15305914
Gene_locus related to this paper: desps-q6ajw5 , desps-q6ak51 , desps-q6ak75 , desps-q6akv7 , desps-q6and7 , desps-q6anv2 , desps-q6ar42 , desps-q6ara4