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| Title : Structural and catalytic effects of surface loop-helix transplantation within haloalkane dehalogenase family - Marek_2020_Comput.Struct.Biotechnol.J_18_1352 |
| Author(s) : Marek M , Chaloupkova R , Prudnikova T , Sato Y , Rezacova P , Nagata Y , Kuta Smatanova I , Damborsky J |
| Ref : Comput Struct Biotechnol J , 18 :1352 , 2020 |
| Abstract : Marek_2020_Comput.Struct.Biotechnol.J_18_1352 |
| ESTHER : Marek_2020_Comput.Struct.Biotechnol.J_18_1352 |
| PubMedSearch : Marek_2020_Comput.Struct.Biotechnol.J_18_1352 |
| PubMedID: 32612758 |
| Gene_locus related to this paper: brael-e2rv62 |
| Title : Complete Genome Sequence of a Phenanthrene Degrader, Mycobacterium sp. Strain EPa45 (NBRC 110737), Isolated from a Phenanthrene-Degrading Consortium - Kato_2015_Genome.Announc_3_e00782 |
| Author(s) : Kato H , Ogawa N , Ohtsubo Y , Oshima K , Toyoda A , Mori H , Nagata Y , Kurokawa K , Hattori M , Fujiyama A , Tsuda M |
| Ref : Genome Announc , 3 : , 2015 |
| Abstract : Kato_2015_Genome.Announc_3_e00782 |
| ESTHER : Kato_2015_Genome.Announc_3_e00782 |
| PubMedSearch : Kato_2015_Genome.Announc_3_e00782 |
| PubMedID: 26184940 |
| Gene_locus related to this paper: 9myco-a0a0g3iim6 , 9myco-a0a0g3ijm3 , 9myco-a0a0g3ipv9 , 9myco-a0a0g3iuf8 , 9myco-a0a0g3ivy5 , 9myco-a0a0g3ihb1 |
| Title : Complete Genome Sequence of Polyvinyl Alcohol-Degrading Strain Sphingopyxis sp. 113P3 (NBRC 111507) - Ohtsubo_2015_Genome.Announc_3_e01169 |
| Author(s) : Ohtsubo Y , Nagata Y , Numata M , Tsuchikane K , Hosoyama A , Yamazoe A , Tsuda M , Fujita N , Kawai F |
| Ref : Genome Announc , 3 :e01169 , 2015 |
| Abstract : Ohtsubo_2015_Genome.Announc_3_e01169 |
| ESTHER : Ohtsubo_2015_Genome.Announc_3_e01169 |
| PubMedSearch : Ohtsubo_2015_Genome.Announc_3_e01169 |
| PubMedID: 26472829 |
| Gene_locus related to this paper: sphs1-a0a0m4cze0 |
| Title : Properties and biotechnological applications of natural and engineered haloalkane dehalogenases - Nagata_2015_Appl.Microbiol.Biotechnol_99_9865 |
| Author(s) : Nagata Y , Ohtsubo Y , Tsuda M |
| Ref : Applied Microbiology & Biotechnology , 99 :9865 , 2015 |
| Abstract : Nagata_2015_Appl.Microbiol.Biotechnol_99_9865 |
| ESTHER : Nagata_2015_Appl.Microbiol.Biotechnol_99_9865 |
| PubMedSearch : Nagata_2015_Appl.Microbiol.Biotechnol_99_9865 |
| PubMedID: 26373728 |
| Title : Bacterial clade with the ribosomal RNA operon on a small plasmid rather than the chromosome - Anda_2015_Proc.Natl.Acad.Sci.U.S.A_112_14343 |
| Author(s) : Anda M , Ohtsubo Y , Okubo T , Sugawara M , Nagata Y , Tsuda M , Minamisawa K , Mitsui H |
| Ref : Proc Natl Acad Sci U S A , 112 :14343 , 2015 |
| Abstract : Anda_2015_Proc.Natl.Acad.Sci.U.S.A_112_14343 |
| ESTHER : Anda_2015_Proc.Natl.Acad.Sci.U.S.A_112_14343 |
| PubMedSearch : Anda_2015_Proc.Natl.Acad.Sci.U.S.A_112_14343 |
| PubMedID: 26534993 |
| Gene_locus related to this paper: 9rhiz-a0a0s2en26 , 9rhiz-a0a0p0z830 , 9rhiz-a0a0p0z878 , 9rhiz-a0a0p0z9k0 , 9rhiz-a0a0s2epz8 |
| Title : Complete Genome Sequence of Polypropylene Glycol- and Polyethylene Glycol-Degrading Sphingopyxis macrogoltabida Strain EY-1 - Ohtsubo_2015_Genome.Announc_3_e01399 |
| Author(s) : Ohtsubo Y , Nagata Y , Numata M , Tsuchikane K , Hosoyama A , Yamazoe A , Tsuda M , Fujita N , Kawai F |
| Ref : Genome Announc , 3 : , 2015 |
| Abstract : Ohtsubo_2015_Genome.Announc_3_e01399 |
| ESTHER : Ohtsubo_2015_Genome.Announc_3_e01399 |
| PubMedSearch : Ohtsubo_2015_Genome.Announc_3_e01399 |
| PubMedID: 26634754 |
| Gene_locus related to this paper: sphmc-a0a0n9ujk2 |
| Title : Complete Genome Sequence of Pseudomonas sp. Strain TKP, Isolated from a gamma-Hexachlorocyclohexane-Degrading Mixed Culture - Ohtsubo_2014_Genome.Announc_2_e01241 |
| Author(s) : Ohtsubo Y , Kishida K , Sato T , Tabata M , Kawasumi T , Ogura Y , Hayashi T , Tsuda M , Nagata Y |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Ohtsubo_2014_Genome.Announc_2_e01241 |
| ESTHER : Ohtsubo_2014_Genome.Announc_2_e01241 |
| PubMedSearch : Ohtsubo_2014_Genome.Announc_2_e01241 |
| PubMedID: 24482516 |
| Gene_locus related to this paper: psefl-e2xn15 , psefs-c3k632 , psefs-laaa , psefs-c3k813 , psefl-e2xkc8 , 9psed-v9qxq1 , 9psed-v9qr47 |
| Title : Structural and functional analysis of a novel haloalkane dehalogenase with two halide-binding sites - Chaloupkova_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_1884 |
| Author(s) : Chaloupkova R , Prudnikova T , Rezacova P , Prokop Z , Koudelakova T , Daniel L , Brezovsky J , Ikeda-Ohtsubo W4 , Sato Y , Kuty M , Nagata Y , Kuta Smatanova I , Damborsky J |
| Ref : Acta Crystallographica D Biol Crystallogr , 70 :1884 , 2014 |
| Abstract : Chaloupkova_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_1884 |
| ESTHER : Chaloupkova_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_1884 |
| PubMedSearch : Chaloupkova_2014_Acta.Crystallogr.D.Biol.Crystallogr_70_1884 |
| PubMedID: 25004965 |
| Gene_locus related to this paper: brael-e2rv62 |
| Title : Complete Genome Sequence of Pseudomonas aeruginosa MTB-1, Isolated from a Microbial Community Enriched by the Technical Formulation of Hexachlorocyclohexane - Ohtsubo_2014_Genome.Announc_2_e01130 |
| Author(s) : Ohtsubo Y , Sato T , Kishida K , Tabata M , Ogura Y , Hayashi T , Tsuda M , Nagata Y |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Ohtsubo_2014_Genome.Announc_2_e01130 |
| ESTHER : Ohtsubo_2014_Genome.Announc_2_e01130 |
| PubMedSearch : Ohtsubo_2014_Genome.Announc_2_e01130 |
| PubMedID: 24459257 |
| Gene_locus related to this paper: pseae-PA3695 , pseae-PA5080 , pseae-q9i252 |
| Title : Complete Genome Sequence of the Thermophilic Polychlorinated Biphenyl Degrader Geobacillus sp. Strain JF8 (NBRC 109937) - Shintani_2014_Genome.Announc_2_e01213 |
| Author(s) : Shintani M , Ohtsubo Y , Fukuda K , Hosoyama A , Ohji S , Yamazoe A , Fujita N , Nagata Y , Tsuda M , Hatta T , Kimbara K |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Shintani_2014_Genome.Announc_2_e01213 |
| ESTHER : Shintani_2014_Genome.Announc_2_e01213 |
| PubMedSearch : Shintani_2014_Genome.Announc_2_e01213 |
| PubMedID: 24459274 |
| Gene_locus related to this paper: geotn-a4isp0 , 9baci-s5yvc0 , 9baci-s5yzj8 |
| Title : Stepwise enhancement of catalytic performance of haloalkane dehalogenase LinB towards beta-hexachlorocyclohexane - Moriuchi_2014_AMB.Express_4_72 |
| Author(s) : Moriuchi R , Tanaka H , Nikawadori Y , Ishitsuka M , Ito M , Ohtsubo Y , Tsuda M , Damborsky J , Prokop Z , Nagata Y |
| Ref : AMB Express , 4 :72 , 2014 |
| Abstract : Moriuchi_2014_AMB.Express_4_72 |
| ESTHER : Moriuchi_2014_AMB.Express_4_72 |
| PubMedSearch : Moriuchi_2014_AMB.Express_4_72 |
| PubMedID: 25401073 |
| Title : The effect of a unique halide-stabilizing residue on the catalytic properties of haloalkane dehalogenase DatA from Agrobacterium tumefaciens C58 - Hasan_2013_FEBS.J_280_3149 |
| Author(s) : Hasan K , Gora A , Brezovsky J , Chaloupkova R , Moskalikova H , Fortova A , Nagata Y , Damborsky J , Prokop Z |
| Ref : Febs J , 280 :3149 , 2013 |
| Abstract : Hasan_2013_FEBS.J_280_3149 |
| ESTHER : Hasan_2013_FEBS.J_280_3149 |
| PubMedSearch : Hasan_2013_FEBS.J_280_3149 |
| PubMedID: 23490078 |
| Title : Complete Genome Sequence of the gamma-Hexachlorocyclohexane-Degrading Bacterium Sphingomonas sp. Strain MM-1 - Tabata_2013_Genome.Announc_1_e00247 |
| Author(s) : Tabata M , Ohtsubo Y , Ohhata S , Tsuda M , Nagata Y |
| Ref : Genome Announc , 1 : , 2013 |
| Abstract : Tabata_2013_Genome.Announc_1_e00247 |
| ESTHER : Tabata_2013_Genome.Announc_1_e00247 |
| PubMedSearch : Tabata_2013_Genome.Announc_1_e00247 |
| PubMedID: 23682148 |
| Gene_locus related to this paper: 9sphn-m4s0a2 , 9sphn-m4sjq0 , 9sphn-m4s4n0 , 9sphn-m4rwk9 , 9sphn-m4s1q7 |
| Title : Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205 - Okai_2013_J.Bacteriol_195_2642 |
| Author(s) : Okai M , Ohtsuka J , Imai LF , Mase T , Moriuchi R , Tsuda M , Nagata K , Nagata Y , Tanokura M |
| Ref : Journal of Bacteriology , 195 :2642 , 2013 |
| Abstract : Okai_2013_J.Bacteriol_195_2642 |
| ESTHER : Okai_2013_J.Bacteriol_195_2642 |
| PubMedSearch : Okai_2013_J.Bacteriol_195_2642 |
| PubMedID: 23564170 |
| Gene_locus related to this paper: sphpi-q6vqx3 |
| Title : Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated-biphenyl degrader - Ohtsubo_2012_J.Bacteriol_194_6970 |
| Author(s) : Ohtsubo Y , Maruyama F , Mitsui H , Nagata Y , Tsuda M |
| Ref : Journal of Bacteriology , 194 :6970 , 2012 |
| Abstract : Ohtsubo_2012_J.Bacteriol_194_6970 |
| ESTHER : Ohtsubo_2012_J.Bacteriol_194_6970 |
| PubMedSearch : Ohtsubo_2012_J.Bacteriol_194_6970 |
| PubMedID: 23209225 |
| Gene_locus related to this paper: 9burk-k0hvd1 , 9burk-k0hw51 , 9burk-k0hxu4 , 9burk-k0i5a9 , 9burk-k0i8t8 , 9burk-k0i3l8 , 9burk-k0i392 |
| Title : Crystallization and preliminary X-ray analysis of the haloalkane dehalogenase DatA from Agrobacterium tumefaciens C58 - Mase_2012_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_68_652 |
| Author(s) : Mase T , Yabuki H , Okai M , Ohtsuka J , Imai FL , Nagata Y , Tanokura M |
| Ref : Acta Crystallographica Sect F Struct Biol Cryst Commun , 68 :652 , 2012 |
| Abstract : Mase_2012_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_68_652 |
| ESTHER : Mase_2012_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_68_652 |
| PubMedSearch : Mase_2012_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_68_652 |
| PubMedID: 22684062 |
| Title : Stereoselectivity and conformational stability of haloalkane dehalogenase DbjA from Bradyrhizobium japonicum USDA110: the effect of pH and temperature - Chaloupkova_2011_FEBS.J_278_2728 |
| Author(s) : Chaloupkova R , Prokop Z , Sato Y , Nagata Y , Damborsky J |
| Ref : Febs J , 278 :2728 , 2011 |
| Abstract : Chaloupkova_2011_FEBS.J_278_2728 |
| ESTHER : Chaloupkova_2011_FEBS.J_278_2728 |
| PubMedSearch : Chaloupkova_2011_FEBS.J_278_2728 |
| PubMedID: 21635695 |
| Title : Biochemical characteristics of the novel haloalkane dehalogenase DatA, isolated from the plant pathogen Agrobacterium tumefaciens C58 - Hasan_2011_Appl.Environ.Microbiol_77_1881 |
| Author(s) : Hasan K , Fortova A , Koudelakova T , Chaloupkova R , Ishitsuka M , Nagata Y , Damborsky J , Prokop Z |
| Ref : Applied Environmental Microbiology , 77 :1881 , 2011 |
| Abstract : Hasan_2011_Appl.Environ.Microbiol_77_1881 |
| ESTHER : Hasan_2011_Appl.Environ.Microbiol_77_1881 |
| PubMedSearch : Hasan_2011_Appl.Environ.Microbiol_77_1881 |
| PubMedID: 21193677 |
| Title : The lin genes for gamma-hexachlorocyclohexane degradation in Sphingomonas sp. MM-1 proved to be dispersed across multiple plasmids - Tabata_2011_Biosci.Biotechnol.Biochem_75_466 |
| Author(s) : Tabata M , Endo R , Ito M , Ohtsubo Y , Kumar A , Tsuda M , Nagata Y |
| Ref : Biosci Biotechnol Biochem , 75 :466 , 2011 |
| Abstract : Tabata_2011_Biosci.Biotechnol.Biochem_75_466 |
| ESTHER : Tabata_2011_Biosci.Biotechnol.Biochem_75_466 |
| PubMedSearch : Tabata_2011_Biosci.Biotechnol.Biochem_75_466 |
| PubMedID: 21389627 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Complete genome sequence of the representative gamma-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26 - Nagata_2010_J.Bacteriol_192_5852 |
| Author(s) : Nagata Y , Ohtsubo Y , Endo R , Ichikawa N , Ankai A , Oguchi A , Fukui S , Fujita N , Tsuda M |
| Ref : Journal of Bacteriology , 192 :5852 , 2010 |
| Abstract : Nagata_2010_J.Bacteriol_192_5852 |
| ESTHER : Nagata_2010_J.Bacteriol_192_5852 |
| PubMedSearch : Nagata_2010_J.Bacteriol_192_5852 |
| PubMedID: 20817768 |
| Gene_locus related to this paper: psepa-q6vpf3 , sphju-d4z1p3 , sphju-d4z3u6 , sphpi-linb , sphju-d4yyy8 |
| Title : Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids - Yano_2010_J.Bacteriol_192_4337 |
| Author(s) : Yano H , Miyakoshi M , Ohshima K , Tabata M , Nagata Y , Hattori M , Tsuda M |
| Ref : Journal of Bacteriology , 192 :4337 , 2010 |
| Abstract : Yano_2010_J.Bacteriol_192_4337 |
| ESTHER : Yano_2010_J.Bacteriol_192_4337 |
| PubMedSearch : Yano_2010_J.Bacteriol_192_4337 |
| PubMedID: 20581207 |
| Title : Enantioselectivity of haloalkane dehalogenases and its modulation by surface loop engineering - |
| Author(s) : Prokop Z , Sato Y , Brezovsky J , Mozga T , Chaloupkova R , Koudelakova T , Jerabek P , Stepankova V , Natsume R , van Leeuwen JG , Janssen DB , Florian J , Nagata Y , Senda T , Damborsky J |
| Ref : Angew Chem Int Ed Engl , 49 :6111 , 2010 |
| PubMedID: 20645368 |
| Gene_locus related to this paper: braja-dhaa |
| Title : Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate - Pavlova_2009_Nat.Chem.Biol_5_727 |
| Author(s) : Pavlova M , Klvana M , Prokop Z , Chaloupkova R , Banas P , Otyepka M , Wade RC , Tsuda M , Nagata Y , Damborsky J |
| Ref : Nat Chemical Biology , 5 :727 , 2009 |
| Abstract : Pavlova_2009_Nat.Chem.Biol_5_727 |
| ESTHER : Pavlova_2009_Nat.Chem.Biol_5_727 |
| PubMedSearch : Pavlova_2009_Nat.Chem.Biol_5_727 |
| PubMedID: 19701186 |
| Title : Crystallization and preliminary X-ray analysis of a novel haloalkane dehalogenase DbeA from Bradyrhizobium elkani USDA94 - Prudnikova_2009_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_65_353 |
| Author(s) : Prudnikova T , Mozga T , Rezacova P , Chaloupkova R , Sato Y , Nagata Y , Brynda J , Kuty M , Damborsky J , Smatanova IK |
| Ref : Acta Crystallographica Sect F Struct Biol Cryst Commun , 65 :353 , 2009 |
| Abstract : Prudnikova_2009_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_65_353 |
| ESTHER : Prudnikova_2009_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_65_353 |
| PubMedSearch : Prudnikova_2009_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_65_353 |
| PubMedID: 19342778 |
| Gene_locus related to this paper: brael-e2rv62 |
| Title : Insertion sequence-based cassette PCR: cultivation-independent isolation of gamma-hexachlorocyclohexane-degrading genes from soil DNA - Fuchu_2008_Appl.Microbiol.Biotechnol_79_627 |
| Author(s) : Fuchu G , Ohtsubo Y , Ito M , Miyazaki R , Ono A , Nagata Y , Tsuda M |
| Ref : Applied Microbiology & Biotechnology , 79 :627 , 2008 |
| Abstract : Fuchu_2008_Appl.Microbiol.Biotechnol_79_627 |
| ESTHER : Fuchu_2008_Appl.Microbiol.Biotechnol_79_627 |
| PubMedSearch : Fuchu_2008_Appl.Microbiol.Biotechnol_79_627 |
| PubMedID: 18425509 |
| Gene_locus related to this paper: psepa-q6vpf3 , sphpi-linb |
| Title : Complete sequence determination combined with analysis of transposition\/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements - Yano_2007_J.Mol.Biol_369_11 |
| Author(s) : Yano H , Garruto CE , Sota M , Ohtsubo Y , Nagata Y , Zylstra GJ , Williams PA , Tsuda M |
| Ref : Journal of Molecular Biology , 369 :11 , 2007 |
| Abstract : Yano_2007_J.Mol.Biol_369_11 |
| ESTHER : Yano_2007_J.Mol.Biol_369_11 |
| PubMedSearch : Yano_2007_J.Mol.Biol_369_11 |
| PubMedID: 17408691 |
| Title : The identification of catalytic pentad in the haloalkane dehalogenase DhmA from Mycobacterium avium N85: reaction mechanism and molecular evolution - Pavlova_2007_J.Struct.Biol_157_384 |
| Author(s) : Pavlova M , Klvana M , Jesenska A , Prokop Z , Konecna H , Sato T , Tsuda M , Nagata Y , Damborsky J |
| Ref : J Struct Biol , 157 :384 , 2007 |
| Abstract : Pavlova_2007_J.Struct.Biol_157_384 |
| ESTHER : Pavlova_2007_J.Struct.Biol_157_384 |
| PubMedSearch : Pavlova_2007_J.Struct.Biol_157_384 |
| PubMedID: 17084094 |
| Title : Degradation of beta-hexachlorocyclohexane by haloalkane dehalogenase LinB from gamma-hexachlorocyclohexane-utilizing bacterium Sphingobium sp. MI1205 - Ito_2007_Arch.Microbiol_188_313 |
| Author(s) : Ito M , Prokop Z , Klvana M , Otsubo Y , Tsuda M , Damborsky J , Nagata Y |
| Ref : Arch Microbiol , 188 :313 , 2007 |
| Abstract : Ito_2007_Arch.Microbiol_188_313 |
| ESTHER : Ito_2007_Arch.Microbiol_188_313 |
| PubMedSearch : Ito_2007_Arch.Microbiol_188_313 |
| PubMedID: 17516046 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Weak activity of haloalkane dehalogenase LinB with 1,2,3-trichloropropane revealed by X-Ray crystallography and microcalorimetry - Monincova_2007_Appl.Environ.Microbiol_73_2005 |
| Author(s) : Monincova M , Prokop Z , Vevodova J , Nagata Y , Damborsky J |
| Ref : Applied Environmental Microbiology , 73 :2005 , 2007 |
| Abstract : Monincova_2007_Appl.Environ.Microbiol_73_2005 |
| ESTHER : Monincova_2007_Appl.Environ.Microbiol_73_2005 |
| PubMedSearch : Monincova_2007_Appl.Environ.Microbiol_73_2005 |
| PubMedID: 17259360 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Crystallization and preliminary crystallographic analysis of a haloalkane dehalogenase, DbjA, from Bradyrhizobium japonicum USDA110 - Sato_2007_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_63_294 |
| Author(s) : Sato Y , Natsume R , Tsuda M , Damborsky J , Nagata Y , Senda T |
| Ref : Acta Crystallographica Sect F Struct Biol Cryst Commun , 63 :294 , 2007 |
| Abstract : Sato_2007_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_63_294 |
| ESTHER : Sato_2007_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_63_294 |
| PubMedSearch : Sato_2007_Acta.Crystallogr.Sect.F.Struct.Biol.Cryst.Commun_63_294 |
| PubMedID: 17401198 |
| Title : Identification of a response regulator gene for catabolite control from a PCB-degrading beta-proteobacteria, Acidovorax sp. KKS102 - Ohtsubo_2006_Mol.Microbiol_60_1563 |
| Author(s) : Ohtsubo Y , Goto H , Nagata Y , Kudo T , Tsuda M |
| Ref : Molecular Microbiology , 60 :1563 , 2006 |
| Abstract : Ohtsubo_2006_Mol.Microbiol_60_1563 |
| ESTHER : Ohtsubo_2006_Mol.Microbiol_60_1563 |
| PubMedSearch : Ohtsubo_2006_Mol.Microbiol_60_1563 |
| PubMedID: 16796688 |
| Title : Expression of glycosylated haloalkane dehalogenase LinB in Pichia pastoris - Nakamura_2006_Protein.Expr.Purif_46_85 |
| Author(s) : Nakamura T , Zamocky M , Zdrahal Z , Chaloupkova R , Monincova M , Prokop Z , Nagata Y , Damborsky J |
| Ref : Protein Expr Purif , 46 :85 , 2006 |
| Abstract : Nakamura_2006_Protein.Expr.Purif_46_85 |
| ESTHER : Nakamura_2006_Protein.Expr.Purif_46_85 |
| PubMedSearch : Nakamura_2006_Protein.Expr.Purif_46_85 |
| PubMedID: 16216524 |
| Title : Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation - Miyazaki_2006_Appl.Environ.Microbiol_72_6923 |
| Author(s) : Miyazaki R , Sato Y , Ito M , Ohtsubo Y , Nagata Y , Tsuda M |
| Ref : Applied Environmental Microbiology , 72 :6923 , 2006 |
| Abstract : Miyazaki_2006_Appl.Environ.Microbiol_72_6923 |
| ESTHER : Miyazaki_2006_Appl.Environ.Microbiol_72_6923 |
| PubMedSearch : Miyazaki_2006_Appl.Environ.Microbiol_72_6923 |
| PubMedID: 16963556 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Cloning, biochemical properties, and distribution of mycobacterial haloalkane dehalogenases - Jesenska_2005_Appl.Environ.Microbiol_71_6736 |
| Author(s) : Jesenska A , Pavlova M , Strouhal M , Chaloupkova R , Tesinska I , Monincova M , Prokop Z , Bartos M , Pavlik I , Rychlik I , Mobius P , Nagata Y , Damborsky J |
| Ref : Applied Environmental Microbiology , 71 :6736 , 2005 |
| Abstract : Jesenska_2005_Appl.Environ.Microbiol_71_6736 |
| ESTHER : Jesenska_2005_Appl.Environ.Microbiol_71_6736 |
| PubMedSearch : Jesenska_2005_Appl.Environ.Microbiol_71_6736 |
| PubMedID: 16269704 |
| Gene_locus related to this paper: myctu-linb |
| Title : Two rhizobial strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, encode haloalkane dehalogenases with novel structures and substrate specificities - Sato_2005_Appl.Environ.Microbiol_71_4372 |
| Author(s) : Sato Y , Monincova M , Chaloupkova R , Prokop Z , Ohtsubo Y , Minamisawa K , Tsuda M , Damborsky J , Nagata Y |
| Ref : Applied Environmental Microbiology , 71 :4372 , 2005 |
| Abstract : Sato_2005_Appl.Environ.Microbiol_71_4372 |
| ESTHER : Sato_2005_Appl.Environ.Microbiol_71_4372 |
| PubMedSearch : Sato_2005_Appl.Environ.Microbiol_71_4372 |
| PubMedID: 16085827 |
| Title : Identification and characterization of genes involved in the downstream degradation pathway of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis UT26 - Endo_2005_J.Bacteriol_187_847 |
| Author(s) : Endo R , Kamakura M , Miyauchi K , Fukuda M , Ohtsubo Y , Tsuda M , Nagata Y |
| Ref : Journal of Bacteriology , 187 :847 , 2005 |
| Abstract : Endo_2005_J.Bacteriol_187_847 |
| ESTHER : Endo_2005_J.Bacteriol_187_847 |
| PubMedSearch : Endo_2005_J.Bacteriol_187_847 |
| PubMedID: 15659662 |
| Gene_locus related to this paper: psepa-q6vqy9 |
| Title : Quantitative analysis of substrate specificity of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 - Kmunicek_2005_Biochemistry_44_3390 |
| Author(s) : Kmunicek J , Hynkova K , Jedlicka T , Nagata Y , Negri A , Gago F , Wade RC , Damborsky J |
| Ref : Biochemistry , 44 :3390 , 2005 |
| Abstract : Kmunicek_2005_Biochemistry_44_3390 |
| ESTHER : Kmunicek_2005_Biochemistry_44_3390 |
| PubMedSearch : Kmunicek_2005_Biochemistry_44_3390 |
| PubMedID: 15736949 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Degradation of beta-Hexachlorocyclohexane by Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26 - Nagata_2005_Appl.Environ.Microbiol_71_2183 |
| Author(s) : Nagata Y , Prokop Z , Sato Y , Jerabek P , Kumar A , Ohtsubo Y , Tsuda M , Damborsky J |
| Ref : Applied Environmental Microbiology , 71 :2183 , 2005 |
| Abstract : Nagata_2005_Appl.Environ.Microbiol_71_2183 |
| ESTHER : Nagata_2005_Appl.Environ.Microbiol_71_2183 |
| PubMedSearch : Nagata_2005_Appl.Environ.Microbiol_71_2183 |
| PubMedID: 15812056 |
| Title : Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 A resolution: dynamics of catalytic residues - Oakley_2004_Biochemistry_43_870 |
| Author(s) : Oakley AJ , Klvana M , Otyepka M , Nagata Y , Wilce MC , Damborsky J |
| Ref : Biochemistry , 43 :870 , 2004 |
| Abstract : Oakley_2004_Biochemistry_43_870 |
| ESTHER : Oakley_2004_Biochemistry_43_870 |
| PubMedSearch : Oakley_2004_Biochemistry_43_870 |
| PubMedID: 14744129 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel - Chaloupkova_2003_J.Biol.Chem_278_52622 |
| Author(s) : Chaloupkova R , Sykorova J , Prokop Z , Jesenska A , Monincova M , Pavlova M , Tsuda M , Nagata Y , Damborsky J |
| Ref : Journal of Biological Chemistry , 278 :52622 , 2003 |
| Abstract : Chaloupkova_2003_J.Biol.Chem_278_52622 |
| ESTHER : Chaloupkova_2003_J.Biol.Chem_278_52622 |
| PubMedSearch : Chaloupkova_2003_J.Biol.Chem_278_52622 |
| PubMedID: 14525993 |
| Title : Reconstruction of mycobacterial dehalogenase Rv2579 by cumulative mutagenesis of haloalkane dehalogenase LinB - Nagata_2003_Appl.Environ.Microbiol_69_2349 |
| Author(s) : Nagata Y , Prokop Z , Marvanova S , Sykorova J , Monincova M , Tsuda M , Damborsky J |
| Ref : Applied Environmental Microbiology , 69 :2349 , 2003 |
| Abstract : Nagata_2003_Appl.Environ.Microbiol_69_2349 |
| ESTHER : Nagata_2003_Appl.Environ.Microbiol_69_2349 |
| PubMedSearch : Nagata_2003_Appl.Environ.Microbiol_69_2349 |
| PubMedID: 12676719 |
| Title : Catalytic mechanism of the maloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 - Prokop_2003_J.Biol.Chem_278_45094 |
| Author(s) : Prokop Z , Monincova M , Chaloupkova R , Klvana M , Nagata Y , Janssen DB , Damborsky J |
| Ref : Journal of Biological Chemistry , 278 :45094 , 2003 |
| Abstract : Prokop_2003_J.Biol.Chem_278_45094 |
| ESTHER : Prokop_2003_J.Biol.Chem_278_45094 |
| PubMedSearch : Prokop_2003_J.Biol.Chem_278_45094 |
| PubMedID: 12952988 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates - Streltsov_2003_Biochemistry_42_10104 |
| Author(s) : Streltsov VA , Prokop Z , Damborsky J , Nagata Y , Oakley A , Wilce MC |
| Ref : Biochemistry , 42 :10104 , 2003 |
| Abstract : Streltsov_2003_Biochemistry_42_10104 |
| ESTHER : Streltsov_2003_Biochemistry_42_10104 |
| PubMedSearch : Streltsov_2003_Biochemistry_42_10104 |
| PubMedID: 12939138 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Halide-stabilizing residues of haloalkane dehalogenases studied by quantum mechanic calculations and site-directed mutagenesis - Bohac_2002_Biochemistry_41_14272 |
| Author(s) : Bohac M , Nagata Y , Prokop Z , Prokop M , Monincova M , Tsuda M , Koca J , Damborsky J |
| Ref : Biochemistry , 41 :14272 , 2002 |
| Abstract : Bohac_2002_Biochemistry_41_14272 |
| ESTHER : Bohac_2002_Biochemistry_41_14272 |
| PubMedSearch : Bohac_2002_Biochemistry_41_14272 |
| PubMedID: 12450392 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26: evidence for product- and water-mediated inhibition - Oakley_2002_Biochemistry_41_4847 |
| Author(s) : Oakley AJ , Prokop Z , Bohac M , Kmunicek J , Jedlicka T , Monincova M , Kuta-Smatanova I , Nagata Y , Damborsky J , Wilce MC |
| Ref : Biochemistry , 41 :4847 , 2002 |
| Abstract : Oakley_2002_Biochemistry_41_4847 |
| ESTHER : Oakley_2002_Biochemistry_41_4847 |
| PubMedSearch : Oakley_2002_Biochemistry_41_4847 |
| PubMedID: 11939779 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Structure-specificity relationships for haloalkane dehalogenases - Damborsky_2001_Environ.Toxicol.Chem_20_2681 |
| Author(s) : Damborsky J , Rorije E , Jesenska A , Nagata Y , Klopman G , Peijnenburg WJ |
| Ref : Environ Toxicol Chem , 20 :2681 , 2001 |
| Abstract : Damborsky_2001_Environ.Toxicol.Chem_20_2681 |
| ESTHER : Damborsky_2001_Environ.Toxicol.Chem_20_2681 |
| PubMedSearch : Damborsky_2001_Environ.Toxicol.Chem_20_2681 |
| PubMedID: 11764149 |
| Title : Biochemical characterization of broad-specificity enzymes using multivariate experimental design and a colorimetric microplate assay: characterization of the haloalkane dehalogenase mutants - Marvanova_2001_J.Microbiol.Methods_44_149 |
| Author(s) : Marvanova S , Nagata Y , Wimmerova M , Sykorova J , Hynkova K , Damborsky J |
| Ref : J Microbiol Methods , 44 :149 , 2001 |
| Abstract : Marvanova_2001_J.Microbiol.Methods_44_149 |
| ESTHER : Marvanova_2001_J.Microbiol.Methods_44_149 |
| PubMedSearch : Marvanova_2001_J.Microbiol.Methods_44_149 |
| PubMedID: 11165344 |
| Title : Expression of the bph genes involved in biphenyl\/PCB degradation in Pseudomonas sp. KKS102 induced by the biphenyl degradation intermediate, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid - Ohtsubo_2000_Gene_256_223 |
| Author(s) : Ohtsubo Y , Nagata Y , Kimbara K , Takagi M , Ohta A |
| Ref : Gene , 256 :223 , 2000 |
| Abstract : Ohtsubo_2000_Gene_256_223 |
| ESTHER : Ohtsubo_2000_Gene_256_223 |
| PubMedSearch : Ohtsubo_2000_Gene_256_223 |
| PubMedID: 11054551 |
| Title : Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26 - Marek_2000_Biochemistry_39_14082 |
| Author(s) : Marek J , Vevodova J , Smatanova IK , Nagata Y , Svensson LA , Newman J , Takagi M , Damborsky J |
| Ref : Biochemistry , 39 :14082 , 2000 |
| Abstract : Marek_2000_Biochemistry_39_14082 |
| ESTHER : Marek_2000_Biochemistry_39_14082 |
| PubMedSearch : Marek_2000_Biochemistry_39_14082 |
| PubMedID: 11087355 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Determination of haloalkane dehalogenase activity by capillary zone electrophoresis - Glatz_2000_J.Chromatogr.A_895_219 |
| Author(s) : Glatz Z , Marini MV , Wimmerova M , Damborsky J , Nagata Y |
| Ref : Journal of Chromatography A , 895 :219 , 2000 |
| Abstract : Glatz_2000_J.Chromatogr.A_895_219 |
| ESTHER : Glatz_2000_J.Chromatogr.A_895_219 |
| PubMedSearch : Glatz_2000_J.Chromatogr.A_895_219 |
| PubMedID: 11105865 |
| Title : Two different types of dehalogenases, LinA and LinB, involved in gamma-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26 are localized in the periplasmic space without molecular processing - Nagata_1999_J.Bacteriol_181_5409 |
| Author(s) : Nagata Y , Futamura A , Miyauchi K , Takagi M |
| Ref : Journal of Bacteriology , 181 :5409 , 1999 |
| Abstract : Nagata_1999_J.Bacteriol_181_5409 |
| ESTHER : Nagata_1999_J.Bacteriol_181_5409 |
| PubMedSearch : Nagata_1999_J.Bacteriol_181_5409 |
| PubMedID: 10464214 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Identification of the catalytic triad in the haloalkane dehalogenase from Sphingomonas paucimobilis UT26 - Hynkova_1999_FEBS.Lett_446_177 |
| Author(s) : Hynkova K , Nagata Y , Takagi M , Damborsky J |
| Ref : FEBS Letters , 446 :177 , 1999 |
| Abstract : Hynkova_1999_FEBS.Lett_446_177 |
| ESTHER : Hynkova_1999_FEBS.Lett_446_177 |
| PubMedSearch : Hynkova_1999_FEBS.Lett_446_177 |
| PubMedID: 10100638 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Crystallization and preliminary X-ray diffraction analysis of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 - Smatanova_1999_Acta.Crystallogr.D.Biol.Crystallogr_55_1231 |
| Author(s) : Smatanova I , Nagata Y , Svensson LA , Takagi M , Marek J |
| Ref : Acta Crystallographica D Biol Crystallogr , 55 :1231 , 1999 |
| Abstract : Smatanova_1999_Acta.Crystallogr.D.Biol.Crystallogr_55_1231 |
| ESTHER : Smatanova_1999_Acta.Crystallogr.D.Biol.Crystallogr_55_1231 |
| PubMedSearch : Smatanova_1999_Acta.Crystallogr.D.Biol.Crystallogr_55_1231 |
| PubMedID: 10329794 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Construction and characterization of histidine-tagged haloalkane dehalogenase (LinB) of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26 - Nagata_1999_Protein.Expr.Purif_17_299 |
| Author(s) : Nagata Y , Hynkova K , Damborsky J , Takagi M |
| Ref : Protein Expr Purif , 17 :299 , 1999 |
| Abstract : Nagata_1999_Protein.Expr.Purif_17_299 |
| ESTHER : Nagata_1999_Protein.Expr.Purif_17_299 |
| PubMedSearch : Nagata_1999_Protein.Expr.Purif_17_299 |
| PubMedID: 10545279 |
| Title : Purification and characterization of a haloalkane dehalogenase of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26 - Nagata_1997_Appl.Environ.Microbiol_63_3707 |
| Author(s) : Nagata Y , Miyauchi K , Damborsky J , Manova K , Ansorgova A , Takagi M |
| Ref : Applied Environmental Microbiology , 63 :3707 , 1997 |
| Abstract : Nagata_1997_Appl.Environ.Microbiol_63_3707 |
| ESTHER : Nagata_1997_Appl.Environ.Microbiol_63_3707 |
| PubMedSearch : Nagata_1997_Appl.Environ.Microbiol_63_3707 |
| PubMedID: 9293022 |
| Gene_locus related to this paper: sphpi-linb |
| Title : Cloning and sequencing of a dehalogenase gene encoding an enzyme with hydrolase activity involved in the degradation of gamma-hexachlorocyclohexane in Pseudomonas paucimobilis - Nagata_1993_J.Bacteriol_175_6403 |
| Author(s) : Nagata Y , Nariya T , Ohtomo R , Fukuda M , Yano K , Takagi M |
| Ref : Journal of Bacteriology , 175 :6403 , 1993 |
| Abstract : Nagata_1993_J.Bacteriol_175_6403 |
| ESTHER : Nagata_1993_J.Bacteriol_175_6403 |
| PubMedSearch : Nagata_1993_J.Bacteriol_175_6403 |
| PubMedID: 7691794 |
| Gene_locus related to this paper: sphpi-linb |