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| Title : Identification and recombinant expression of a cutinase from Papiliotrema laurentii that hydrolyzes natural and synthetic polyesters - Roman_2024_Appl.Environ.Microbiol__e0169423 |
| Author(s) : Roman VA , Crable BR , Wagner DN , Gryganskyi A , Zelik S , Cummings L , Hung CS , Nadeau LJ , Schratz L , Haridas S , Pangilinan J , Lipzen A , Na H , Yan M , Ng V , Grigoriev IV , Barlow D , Biffinger J , Kelley-Loughnane N , Crookes-Goodson WJ , Stamps B , Varaljay VA |
| Ref : Applied Environmental Microbiology , :e0169423 , 2024 |
| Abstract : Roman_2024_Appl.Environ.Microbiol__e0169423 |
| ESTHER : Roman_2024_Appl.Environ.Microbiol__e0169423 |
| PubMedSearch : Roman_2024_Appl.Environ.Microbiol__e0169423 |
| PubMedID: 38624219 |
| Gene_locus related to this paper: papla-Plcut1 |
| Title : Salinity tolerance mechanisms of an Arctic Pelagophyte using comparative transcriptomic and gene expression analysis - Freyria_2022_Commun.Biol_5_500 |
| Author(s) : Freyria NJ , Kuo A , Chovatia M , Johnson J , Lipzen A , Barry KW , Grigoriev IV , Lovejoy C |
| Ref : Commun Biol , 5 :500 , 2022 |
| Abstract : Freyria_2022_Commun.Biol_5_500 |
| ESTHER : Freyria_2022_Commun.Biol_5_500 |
| PubMedSearch : Freyria_2022_Commun.Biol_5_500 |
| PubMedID: 35614207 |
| Title : Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery - Mondo_2019_Biotechnol.Biofuels_12_229 |
| Author(s) : Mondo SJ , Jimenez DJ , Hector RE , Lipzen A , Yan M , LaButti K , Barry K , van Elsas JD , Grigoriev IV , Nichols NN |
| Ref : Biotechnol Biofuels , 12 :229 , 2019 |
| Abstract : Mondo_2019_Biotechnol.Biofuels_12_229 |
| ESTHER : Mondo_2019_Biotechnol.Biofuels_12_229 |
| PubMedSearch : Mondo_2019_Biotechnol.Biofuels_12_229 |
| PubMedID: 31572496 |
| Gene_locus related to this paper: 9pezi-a0a5n5p0y9 , 9pezi-a0a5n5pg71 , 9pezi-a0a5n5ld08 |
| Title : Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613 - Park_2019_Appl.Microbiol.Biotechnol_103_8145 |
| Author(s) : Park H , Min B , Jang Y , Kim J , Lipzen A , Sharma A , Andreopoulos B , Johnson J , Riley R , Spatafora JW , Henrissat B , Kim KH , Grigoriev IV , Kim JJ , Choi IG |
| Ref : Applied Microbiology & Biotechnology , 103 :8145 , 2019 |
| Abstract : Park_2019_Appl.Microbiol.Biotechnol_103_8145 |
| ESTHER : Park_2019_Appl.Microbiol.Biotechnol_103_8145 |
| PubMedSearch : Park_2019_Appl.Microbiol.Biotechnol_103_8145 |
| PubMedID: 31482283 |
| Gene_locus related to this paper: 9agam-a0a5b1qnb8 , 9agam-a0a5b1qwq3 , 9agam-a0a5b1qh04 , 9agam-a0a5b1qyk1 , 9agam-a0a5b1qmi3 , 9agam-a0a5b1qi91 , 9agam-a0a5b1qhi2 |
| Title : Genomics and Development of Lentinus tigrinus: A White-Rot Wood-Decaying Mushroom with Dimorphic Fruiting Bodies - Wu_2018_Genome.Biol.Evol_10_3250 |
| Author(s) : Wu B , Xu Z , Knudson A , Carlson A , Chen N , Kovaka S , LaButti K , Lipzen A , Pennachio C , Riley R , Schakwitz W , Umezawa K , Ohm RA , Grigoriev IV , Nagy LG , Gibbons J , Hibbett D |
| Ref : Genome Biol Evol , 10 :3250 , 2018 |
| Abstract : Wu_2018_Genome.Biol.Evol_10_3250 |
| ESTHER : Wu_2018_Genome.Biol.Evol_10_3250 |
| PubMedSearch : Wu_2018_Genome.Biol.Evol_10_3250 |
| PubMedID: 30398645 |
| Gene_locus related to this paper: 9aphy-a0a5c2t2q2 |
| Title : Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass - Miyauchi_2018_Biotechnol.Biofuels_11_201 |
| Author(s) : Miyauchi S , Rancon A , Drula E , Hage H , Chaduli D , Favel A , Grisel S , Henrissat B , Herpoel-Gimbert I , Ruiz-Duenas FJ , Chevret D , Hainaut M , Lin J , Wang M , Pangilinan J , Lipzen A , Lesage-Meessen L , Navarro D , Riley R , Grigoriev IV , Zhou S , Raouche S , Rosso MN |
| Ref : Biotechnol Biofuels , 11 :201 , 2018 |
| Abstract : Miyauchi_2018_Biotechnol.Biofuels_11_201 |
| ESTHER : Miyauchi_2018_Biotechnol.Biofuels_11_201 |
| PubMedSearch : Miyauchi_2018_Biotechnol.Biofuels_11_201 |
| PubMedID: 30061923 |
| Gene_locus related to this paper: 9aphy-a0a371d1b5 , 9aphy-a0a371dju9 |
| Title : Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales) - Urquhart_2018_Front.Microbiol_9_3058 |
| Author(s) : Urquhart AS , Mondo SJ , Makela MR , Hane JK , Wiebenga A , He G , Mihaltcheva S , Pangilinan J , Lipzen A , Barry K , de Vries RP , Grigoriev IV , Idnurm A |
| Ref : Front Microbiol , 9 :3058 , 2018 |
| Abstract : Urquhart_2018_Front.Microbiol_9_3058 |
| ESTHER : Urquhart_2018_Front.Microbiol_9_3058 |
| PubMedSearch : Urquhart_2018_Front.Microbiol_9_3058 |
| PubMedID: 30619145 |
| Gene_locus related to this paper: byssp-a0a443i770 , byssp-a0a443i5x3 , byssp-vdta1 |
| Title : Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi - Knapp_2018_Sci.Rep_8_6321 |
| Author(s) : Knapp DG , Nemeth JB , Barry K , Hainaut M , Henrissat B , Johnson J , Kuo A , Lim JHP , Lipzen A , Nolan M , Ohm RA , Tamas L , Grigoriev IV , Spatafora JW , Nagy LG , Kovacs GM |
| Ref : Sci Rep , 8 :6321 , 2018 |
| Abstract : Knapp_2018_Sci.Rep_8_6321 |
| ESTHER : Knapp_2018_Sci.Rep_8_6321 |
| PubMedSearch : Knapp_2018_Sci.Rep_8_6321 |
| PubMedID: 29679020 |
| Gene_locus related to this paper: 9pleo-a0a2v1dn29 , 9helo-a0a2v1c5l1 , 9pleo-a0a2v1dti3 , 9helo-a0a2v1bts1 , 9helo-a0a2v1cbe5 , 9pleo-a0a2v1cxz2 , 9pleo-a0a2v1d1n3 , 9pleo-a0a2v1db80 , 9pleo-a0a2v1ddg5 , 9pleo-a0a2v1dij1 , 9pleo-a0a2v1dp20 , 9pleo-a0a2v1e6x2 , 9pleo-a0a2v1ee64 , 9helo-a0a2v1cbn2 , 9helo-a0a2v1b581 , 9pleo-a0a2v1e5g2 , corcc-a0a2t2nt04 , 9helo-a0a2v1buk5 |
| Title : The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet - Grum-Grzhimaylo_2018_Mol.Ecol_27_4808 |
| Author(s) : Grum-Grzhimaylo AA , Falkoski DL , van den Heuvel J , Valero-Jimenez CA , Min B , Choi IG , Lipzen A , Daum CG , Aanen DK , Tsang A , Henrissat B , Bilanenko EN , de Vries RP , van Kan JAL , Grigoriev IV , Debets AJM |
| Ref : Mol Ecol , 27 :4808 , 2018 |
| Abstract : Grum-Grzhimaylo_2018_Mol.Ecol_27_4808 |
| ESTHER : Grum-Grzhimaylo_2018_Mol.Ecol_27_4808 |
| PubMedSearch : Grum-Grzhimaylo_2018_Mol.Ecol_27_4808 |
| PubMedID: 30368956 |
| Gene_locus related to this paper: 9pezi-a0a3n2q0e7 , 9pezi-a0a3n2pu70 , 9pezi-a0a3n2puy7 |
| Title : Coniella lustricola, a new species from submerged detritus - Raudabaugh_2018_Mycol.Prog_17_191 |
| Author(s) : Raudabaugh DB , Iturriaga T , Carver A , Mondo S , Pangilinan J , Lipzen A , He G , Amirebrahimi M , Grigoriev IV , Miller AN |
| Ref : Mycol Prog , 17 :191 , 2018 |
| Abstract : Raudabaugh_2018_Mycol.Prog_17_191 |
| ESTHER : Raudabaugh_2018_Mycol.Prog_17_191 |
| PubMedSearch : Raudabaugh_2018_Mycol.Prog_17_191 |
| PubMedID: |
| Gene_locus related to this paper: 9pezi-a0a2t3a098 , 9pezi-a0a2t2zy46 , 9pezi-a0a2t3akb4 , 9pezi-a0a2t3a2p2 |
| Title : Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists - Martino_2018_New.Phytol_217_1213 |
| Author(s) : Martino E , Morin E , Grelet GA , Kuo A , Kohler A , Daghino S , Barry KW , Cichocki N , Clum A , Dockter RB , Hainaut M , Kuo RC , LaButti K , Lindahl BD , Lindquist EA , Lipzen A , Khouja HR , Magnuson J , Murat C , Ohm RA , Singer SW , Spatafora JW , Wang M , Veneault-Fourrey C , Henrissat B , Grigoriev IV , Martin FM , Perotto S |
| Ref : New Phytol , 217 :1213 , 2018 |
| Abstract : Martino_2018_New.Phytol_217_1213 |
| ESTHER : Martino_2018_New.Phytol_217_1213 |
| PubMedSearch : Martino_2018_New.Phytol_217_1213 |
| PubMedID: 29315638 |
| Gene_locus related to this paper: amore-a0a2t3axk4 , amore-a0a2t3avs4 , amore-a0a2t3ay04 , amore-a0a2t3aph0 |
| Title : Genome-Wide Analysis of Corynespora cassiicola Leaf Fall Disease Putative Effectors - Lopez_2018_Front.Microbiol_9_276 |
| Author(s) : Lopez D , Ribeiro S , Label P , Fumanal B , Venisse JS , Kohler A , de Oliveira RR , LaButti K , Lipzen A , Lail K , Bauer D , Ohm RA , Barry KW , Spatafora J , Grigoriev IV , Martin FM , Pujade-Renaud V |
| Ref : Front Microbiol , 9 :276 , 2018 |
| Abstract : Lopez_2018_Front.Microbiol_9_276 |
| ESTHER : Lopez_2018_Front.Microbiol_9_276 |
| PubMedSearch : Lopez_2018_Front.Microbiol_9_276 |
| PubMedID: 29551995 |
| Gene_locus related to this paper: corcc-a0a2t2nss3 , corcc-a0a2t2n5c6 , corcc-a0a2t2n3a1 , corcc-a0a2t2p617 , corcc-a0a2t2nt04 , corcc-a0a2t2n262 |
| Title : Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species - Kjaerbolling_2018_Proc.Natl.Acad.Sci.U.S.A_115_E753 |
| Author(s) : Kjaerbolling I , Vesth TC , Frisvad JC , Nybo JL , Theobald S , Kuo A , Bowyer P , Matsuda Y , Mondo S , Lyhne EK , Kogle ME , Clum A , Lipzen A , Salamov A , Ngan CY , Daum C , Chiniquy J , Barry K , LaButti K , Haridas S , Simmons BA , Magnuson JK , Mortensen UH , Larsen TO , Grigoriev IV , Baker SE , Andersen MR |
| Ref : Proc Natl Acad Sci U S A , 115 :E753 , 2018 |
| Abstract : Kjaerbolling_2018_Proc.Natl.Acad.Sci.U.S.A_115_E753 |
| ESTHER : Kjaerbolling_2018_Proc.Natl.Acad.Sci.U.S.A_115_E753 |
| PubMedSearch : Kjaerbolling_2018_Proc.Natl.Acad.Sci.U.S.A_115_E753 |
| PubMedID: 29317534 |
| Gene_locus related to this paper: 9euro-a0a0f8xhh7 , 9euro-a0a2t5ll04 , aspn1-nvfd |
| Title : Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle - Murat_2018_Nat.Ecol.Evol_2_1956 |
| Author(s) : Murat C , Payen T , Noel B , Kuo A , Morin E , Chen J , Kohler A , Krizsan K , Balestrini R , Da Silva C , Montanini B , Hainaut M , Levati E , Barry KW , Belfiori B , Cichocki N , Clum A , Dockter RB , Fauchery L , Guy J , Iotti M , Le Tacon F , Lindquist EA , Lipzen A , Malagnac F , Mello A , Molinier V , Miyauchi S , Poulain J , Riccioni C , Rubini A , Sitrit Y , Splivallo R , Traeger S , Wang M , Zifcakova L , Wipf D , Zambonelli A , Paolocci F , Nowrousian M , Ottonello S , Baldrian P , Spatafora JW , Henrissat B , Nagy LG , Aury JM , Wincker P , Grigoriev IV , Bonfante P , Martin FM |
| Ref : Nat Ecol Evol , 2 :1956 , 2018 |
| Abstract : Murat_2018_Nat.Ecol.Evol_2_1956 |
| ESTHER : Murat_2018_Nat.Ecol.Evol_2_1956 |
| PubMedSearch : Murat_2018_Nat.Ecol.Evol_2_1956 |
| PubMedID: 30420746 |
| Gene_locus related to this paper: 9pezi-a0a3n4l4q5 , 9pezi-a0a3n4lpg7 |
| Title : Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria - Sipos_2017_Nat.Ecol.Evol_1_1931 |
| Author(s) : Sipos G , Prasanna AN , Walter MC , O'Connor E , Balint B , Krizsan K , Kiss B , Hess J , Varga T , Slot J , Riley R , Boka B , Rigling D , Barry K , Lee J , Mihaltcheva S , LaButti K , Lipzen A , Waldron R , Moloney NM , Sperisen C , Kredics L , Vagvolgyi C , Patrignani A , Fitzpatrick D , Nagy I , Doyle S , Anderson JB , Grigoriev IV , Guldener U , Munsterkotter M , Nagy LG |
| Ref : Nat Ecol Evol , 1 :1931 , 2017 |
| Abstract : Sipos_2017_Nat.Ecol.Evol_1_1931 |
| ESTHER : Sipos_2017_Nat.Ecol.Evol_1_1931 |
| PubMedSearch : Sipos_2017_Nat.Ecol.Evol_1_1931 |
| PubMedID: 29085064 |
| Gene_locus related to this paper: armos-armb |
| Title : The genome of Xylona heveae provides a window into fungal endophytism - Gazis_2016_Fungal.Biol_120_26 |
| Author(s) : Gazis R , Kuo A , Riley R , LaButti K , Lipzen A , Lin J , Amirebrahimi M , Hesse CN , Spatafora JW , Henrissat B , Hainaut M , Grigoriev IV , Hibbett DS |
| Ref : Fungal Biol , 120 :26 , 2016 |
| Abstract : Gazis_2016_Fungal.Biol_120_26 |
| ESTHER : Gazis_2016_Fungal.Biol_120_26 |
| PubMedSearch : Gazis_2016_Fungal.Biol_120_26 |
| PubMedID: 26693682 |
| Gene_locus related to this paper: 9pezi-a0a165f9w1 , 9pezi-a0a165fsb2 , 9pezi-a0a165gpf2 , 9pezi-a0a164zp96 , xylht-a0a165aju9 , xylht-a0a165jye6 , xylht-a0a165jir4 |
| Title : Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage - Mosier_2016_Front.Microbiol_7_238 |
| Author(s) : Mosier AC , Miller CS , Frischkorn KR , Ohm RA , Li Z , LaButti K , Lapidus A , Lipzen A , Chen C , Johnson J , Lindquist EA , Pan C , Hettich RL , Grigoriev IV , Singer SW , Banfield JF |
| Ref : Front Microbiol , 7 :238 , 2016 |
| Abstract : Mosier_2016_Front.Microbiol_7_238 |
| ESTHER : Mosier_2016_Front.Microbiol_7_238 |
| PubMedSearch : Mosier_2016_Front.Microbiol_7_238 |
| PubMedID: 26973616 |
| Gene_locus related to this paper: 9pezi-a0a150vf31 , 9pezi-a0a150uua7 , 9pezi-a0a150uvr8 , 9pezi-a0a150uzg0 , 9pezi-a0a150v0d4 , 9pezi-a0a150v5h7 , 9pezi-a0a150v662 , 9pezi-a0a150v8z3 , 9pezi-a0a150v9v5 , 9pezi-a0a150vc68 , 9pezi-a0a150vcp1 , 9pezi-a0a150vd70 , 9pezi-a0a150vda0 , 9pezi-a0a150vgv5 , 9pezi-a0a150vil1 , 9pezi-a0a150uu68 , 9pezi-a0a150vas8 , 9pezi-a0a150vji1 , 9pezi-a0a150vii2 |
| Title : Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus - Couturier_2015_Biotechnol.Biofuels_8_216 |
| Author(s) : Couturier M , Navarro D , Chevret D , Henrissat B , Piumi F , Ruiz-Duenas FJ , Martinez AT , Grigoriev IV , Riley R , Lipzen A , Berrin JG , Master ER , Rosso MN |
| Ref : Biotechnol Biofuels , 8 :216 , 2015 |
| Abstract : Couturier_2015_Biotechnol.Biofuels_8_216 |
| ESTHER : Couturier_2015_Biotechnol.Biofuels_8_216 |
| PubMedSearch : Couturier_2015_Biotechnol.Biofuels_8_216 |
| PubMedID: 26692083 |
| Gene_locus related to this paper: pycco-a0a1y2inc6 , pycco-a0a1y2ib15 , pycco-a0a1y2j2i8 , pycco-a0a1y2i5q8 , pycco-a0a1y2ib37 |
| Title : Genomic adaptations of the halophilic Dead Sea filamentous fungus Eurotium rubrum - Kis-Papo_2014_Nat.Commun_5_3745 |
| Author(s) : Kis-Papo T , Weig AR , Riley R , Persoh D , Salamov A , Sun H , Lipzen A , Wasser SP , Rambold G , Grigoriev IV , Nevo E |
| Ref : Nat Commun , 5 :3745 , 2014 |
| Abstract : Kis-Papo_2014_Nat.Commun_5_3745 |
| ESTHER : Kis-Papo_2014_Nat.Commun_5_3745 |
| PubMedSearch : Kis-Papo_2014_Nat.Commun_5_3745 |
| PubMedID: 24811710 |
| Gene_locus related to this paper: 9euro-a0a017sa42 , 9euro-a0a017s0c9 , 9euro-a0a017s186 , 9euro-a0a017s8c9 , 9euro-a0a017s6r6 |
| Title : Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae - Toome_2014_New.Phytol_202_554 |
| Author(s) : Toome M , Ohm RA , Riley RW , James TY , Lazarus KL , Henrissat B , Albu S , Boyd A , Chow J , Clum A , Heller G , Lipzen A , Nolan M , Sandor L , Zvenigorodsky N , Grigoriev IV , Spatafora JW , Aime MC |
| Ref : New Phytol , 202 :554 , 2014 |
| Abstract : Toome_2014_New.Phytol_202_554 |
| ESTHER : Toome_2014_New.Phytol_202_554 |
| PubMedSearch : Toome_2014_New.Phytol_202_554 |
| PubMedID: 24372469 |
| Gene_locus related to this paper: mixos-g7dyk5 , mixos-g7eay5 |