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| Title : Comprehensive subspecies identification of 175 nontuberculous mycobacteria species based on 7547 genomic profiles - Matsumoto_2019_Emerg.Microbes.Infect_8_1043 |
| Author(s) : Matsumoto Y , Kinjo T , Motooka D , Nabeya D , Jung N , Uechi K , Horii T , Iida T , Fujita J , Nakamura S |
| Ref : Emerg Microbes Infect , 8 :1043 , 2019 |
| Abstract : Matsumoto_2019_Emerg.Microbes.Infect_8_1043 |
| ESTHER : Matsumoto_2019_Emerg.Microbes.Infect_8_1043 |
| PubMedSearch : Matsumoto_2019_Emerg.Microbes.Infect_8_1043 |
| PubMedID: 31287781 |
| Gene_locus related to this paper: 9myco-a0a6n4vdv4 |
| Title : New-onset diabetes mellitus after living-donor liver transplantation: association with graft synthetic function - Yagi_2017_Surg.Today_47_733 |
| Author(s) : Yagi S , Kaido T , Iida T , Yoshizawa A , Okajima H , Uemoto S |
| Ref : Surg Today , 47 :733 , 2017 |
| Abstract : Yagi_2017_Surg.Today_47_733 |
| ESTHER : Yagi_2017_Surg.Today_47_733 |
| PubMedSearch : Yagi_2017_Surg.Today_47_733 |
| PubMedID: 27837276 |
| Title : Draft Genome Sequence of the Alkaliphilic and Xylanolytic Paenibacillus sp. Strain JCM 10914, Isolated from the Gut of a Soil-Feeding Termite - Ohkuma_2014_Genome.Announc_2_e01144 |
| Author(s) : Ohkuma M , Yuki M , Oshima K , Suda W , Oshida Y , Kitamura K , Iida T , Hattori M |
| Ref : Genome Announc , 2 :e01144 , 2014 |
| Abstract : Ohkuma_2014_Genome.Announc_2_e01144 |
| ESTHER : Ohkuma_2014_Genome.Announc_2_e01144 |
| PubMedSearch : Ohkuma_2014_Genome.Announc_2_e01144 |
| PubMedID: 24459258 |
| Gene_locus related to this paper: 9bacl-v9gd19 , 9bacl-v9g8w0 |
| Title : Draft Genome Sequences of Three Strains of Bacteroides pyogenes Isolated from a Cat and Swine - Sakamoto_2014_Genome.Announc_2_e01242 |
| Author(s) : Sakamoto M , Oshima K , Suda W , Kitamura K , Iida T , Hattori M , Ohkuma M |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Sakamoto_2014_Genome.Announc_2_e01242 |
| ESTHER : Sakamoto_2014_Genome.Announc_2_e01242 |
| PubMedSearch : Sakamoto_2014_Genome.Announc_2_e01242 |
| PubMedID: 24482517 |
| Gene_locus related to this paper: 9bace-w4pec1 , 9bace-w4paz4 |
| Title : Draft Genome Sequences of Psychrobacter Strains JCM 18900, JCM 18901, JCM 18902, and JCM 18903, Isolated Preferentially from Frozen Aquatic Organisms - Kudo_2014_Genome.Announc_2_e00280 |
| Author(s) : Kudo T , Kidera A , Kida M , Kawauchi A , Shimizu R , Nakahara T , Zhang X , Yamada A , Amano M , Hamada Y , Taniyama S , Arakawa O , Yoshida A , Oshima K , Suda W , Kuwahara H , Nogi Y , Kitamura K , Yuki M , Iida T , Moriya S , Inoue T , Hongoh Y , Hattori M , Ohkuma M |
| Ref : Genome Announc , 2 :e00280 , 2014 |
| Abstract : Kudo_2014_Genome.Announc_2_e00280 |
| ESTHER : Kudo_2014_Genome.Announc_2_e00280 |
| PubMedSearch : Kudo_2014_Genome.Announc_2_e00280 |
| PubMedID: 24699965 |
| Gene_locus related to this paper: 9gamm-x0q9t6 , 9gamm-x0r0h9 , 9gamm-x0rb73 , 9gamm-x0qpg3 , 9gamm-x0rx94 , 9gamm-x0rpe0 |
| Title : Draft Genome Sequence of Bacteroides reticulotermitis Strain JCM 10512T, Isolated from the Gut of a Termite - Yuki_2014_Genome.Announc_2_e00072 |
| Author(s) : Yuki M , Oshima K , Suda W , Sakamoto M , Iida T , Hattori M , Ohkuma M |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Yuki_2014_Genome.Announc_2_e00072 |
| ESTHER : Yuki_2014_Genome.Announc_2_e00072 |
| PubMedSearch : Yuki_2014_Genome.Announc_2_e00072 |
| PubMedID: 24526645 |
| Gene_locus related to this paper: 9bace-w4uxt1 , 9bace-w4uy17 , 9bace-w4uuy7 |
| Title : Draft Genome Sequences of Three Alkaliphilic Bacillus Strains, Bacillus wakoensis JCM 9140T, Bacillus akibai JCM 9157T, and Bacillus hemicellulosilyticus JCM 9152T - Yuki_2014_Genome.Announc_2_e01258 |
| Author(s) : Yuki M , Oshima K , Suda W , Oshida Y , Kitamura K , Iida T , Hattori M , Ohkuma M |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Yuki_2014_Genome.Announc_2_e01258 |
| ESTHER : Yuki_2014_Genome.Announc_2_e01258 |
| PubMedSearch : Yuki_2014_Genome.Announc_2_e01258 |
| PubMedID: 24482522 |
| Gene_locus related to this paper: 9baci-w4q973 , baca3-w4qlz5 , 9baci-w4qj07 , 9baci-w4q8b8 , baca3-w4qp70 , 9baci-w4qcm9 , baca3-w4qrq6 |
| Title : Draft Genome Sequence of the Boron-Tolerant and Moderately Halotolerant Bacterium Gracilibacillus boraciitolerans JCM 21714T - Ahmed_2014_Genome.Announc_2_e00097 |
| Author(s) : Ahmed I , Oshima K , Suda W , Kitamura K , Iida T , Ohmori Y , Fujiwara T , Hattori M , Ohkuma M |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Ahmed_2014_Genome.Announc_2_e00097 |
| ESTHER : Ahmed_2014_Genome.Announc_2_e00097 |
| PubMedSearch : Ahmed_2014_Genome.Announc_2_e00097 |
| PubMedID: 24558242 |
| Gene_locus related to this paper: 9baci-w4vi05 , 9baci-w4vjh3 , 9baci-w4vgr7 |
| Title : Draft Genome Sequences of Cyclodextrin-Producing Alkaliphilic Bacillus Strains JCM 19045, JCM 19046, and JCM 19047 - Kudo_2014_Genome.Announc_2_e00211 |
| Author(s) : Kudo T , Sakamoto K , Akinaga M , Kawauchi A , Nakahara T , Zhang X , Yamada A , Oshima K , Suda W , Kuwahara H , Nakamura N , Nogi Y , Kitamura K , Yuki M , Iida T , Moriya S , Inoue T , Hongoh Y , Hattori M , Ohkuma M |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Kudo_2014_Genome.Announc_2_e00211 |
| ESTHER : Kudo_2014_Genome.Announc_2_e00211 |
| PubMedSearch : Kudo_2014_Genome.Announc_2_e00211 |
| PubMedID: 24652985 |
| Gene_locus related to this paper: 9baci-a0a060lzd7 , 9baci-w7yjr4 , 9baci-w7zpe5 , 9baci-w8a608 , 9baci-w7zad0 |
| Title : Draft Genome Sequences of Geomicrobium sp. Strains JCM 19037, JCM 19038, JCM 19039, and JCM 19055, Isolated from Aquatic Samples - Kudo_2014_Genome.Announc_2_e00622 |
| Author(s) : Kudo T , Nakahara T , Zhang X , Taniyama S , Arakawa O , Murase S , Nakata H , Oshima K , Suda W , Kitamura K , Iida T , Oshida Y , Inoue T , Hongoh Y , Hattori M , Ohkuma M |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Kudo_2014_Genome.Announc_2_e00622 |
| ESTHER : Kudo_2014_Genome.Announc_2_e00622 |
| PubMedSearch : Kudo_2014_Genome.Announc_2_e00622 |
| PubMedID: 24948772 |
| Gene_locus related to this paper: 9bacl-a0a061nv39 , 9bacl-a0a061nsm4 , 9bacl-a0a061ndf6 , 9bacl-a0a061nlu5 , 9bacl-a0a061ntb4 , 9bacl-a0a061nnc9 , 9bacl-a0a061pf66 |
| Title : Draft Genome Sequences of Two Lactobacillus Strains, L. farraginis JCM 14108T and L. composti JCM 14202T, Isolated from Compost of Distilled Shochu Residue - Yuki_2014_Genome.Announc_2_e00257 |
| Author(s) : Yuki M , Oshima K , Suda W , Kitahara M , Kitamura K , Iida T , Hattori M , Ohkuma M |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Yuki_2014_Genome.Announc_2_e00257 |
| ESTHER : Yuki_2014_Genome.Announc_2_e00257 |
| PubMedSearch : Yuki_2014_Genome.Announc_2_e00257 |
| PubMedID: 24675866 |
| Gene_locus related to this paper: 9laco-x0pb49 , 9laco-x0psi7 |
| Title : Draft Genome Sequence of Clostridium straminisolvens Strain JCM 21531T, Isolated from a Cellulose-Degrading Bacterial Community - Yuki_2014_Genome.Announc_2_e00110 |
| Author(s) : Yuki M , Oshima K , Suda W , Sakamoto M , Kitamura K , Iida T , Hattori M , Ohkuma M |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Yuki_2014_Genome.Announc_2_e00110 |
| ESTHER : Yuki_2014_Genome.Announc_2_e00110 |
| PubMedSearch : Yuki_2014_Genome.Announc_2_e00110 |
| PubMedID: 24558248 |
| Gene_locus related to this paper: 9firm-w4vb95 , 9firm-w4v5w9 |
| Title : Draft Genome Sequences of Vibrio sp. Strains Isolated from Tetrodotoxin-Bearing Scavenging Gastropod - Kudo_2014_Genome.Announc_2_e00623 |
| Author(s) : Kudo T , Kawauchi A , Nakahara T , Zhang X , Taniyama S , Takatani T , Arakawa O , Oshima K , Suda W , Kitamura K , Iida T , Iino T , Inoue T , Hongoh Y , Hattori M , Ohkuma M |
| Ref : Genome Announc , 2 : , 2014 |
| Abstract : Kudo_2014_Genome.Announc_2_e00623 |
| ESTHER : Kudo_2014_Genome.Announc_2_e00623 |
| PubMedSearch : Kudo_2014_Genome.Announc_2_e00623 |
| PubMedID: 24948773 |
| Title : Analysis of two gene clusters involved in the degradation of 4-fluorophenol by Arthrobacter sp. strain IF1 - Ferreira_2009_Appl.Environ.Microbiol_75_7767 |
| Author(s) : Ferreira MI , Iida T , Hasan SA , Nakamura K , Fraaije MW , Janssen DB , Kudo T |
| Ref : Applied Environmental Microbiology , 75 :7767 , 2009 |
| Abstract : Ferreira_2009_Appl.Environ.Microbiol_75_7767 |
| ESTHER : Ferreira_2009_Appl.Environ.Microbiol_75_7767 |
| PubMedSearch : Ferreira_2009_Appl.Environ.Microbiol_75_7767 |
| PubMedID: 19837837 |
| Gene_locus related to this paper: 9micc-d1mys5 |
| Title : The GAF-like-domain-containing transcriptional regulator DfdR is a sensor protein for dibenzofuran and several hydrophobic aromatic compounds - Iida_2009_J.Bacteriol_191_123 |
| Author(s) : Iida T , Waki T , Nakamura K , Mukouzaka Y , Kudo T |
| Ref : Journal of Bacteriology , 191 :123 , 2009 |
| Abstract : Iida_2009_J.Bacteriol_191_123 |
| ESTHER : Iida_2009_J.Bacteriol_191_123 |
| PubMedSearch : Iida_2009_J.Bacteriol_191_123 |
| PubMedID: 18952799 |
| Gene_locus related to this paper: rhosp-DFDC |
| Title : Genomic taxonomy of Vibrios - Thompson_2009_BMC.Evol.Biol_9_258 |
| Author(s) : Thompson CC , Vicente AC , Souza RC , Vasconcelos AT , Vesth T , Alves N, Jr. , Ussery DW , Iida T , Thompson FL |
| Ref : BMC Evol Biol , 9 :258 , 2009 |
| Abstract : Thompson_2009_BMC.Evol.Biol_9_258 |
| ESTHER : Thompson_2009_BMC.Evol.Biol_9_258 |
| PubMedSearch : Thompson_2009_BMC.Evol.Biol_9_258 |
| PubMedID: 19860885 |
| Gene_locus related to this paper: vibal-q1v7b5 , vibal-q1v7d0 , vibal-q1v463 , vibal-q1v627 , vibal-q1v697 , vibal-q1va42 , vibal-q1vai8 , vibal-q1vap1 , vibal-q1vbx2 , vibal-q1vfw6 , vibch-a6xrz3 , vibch-VC2718 , vibch-VCA0688 , vibch-y1892 , vibch-y2276 , vibha-d0x5c8 , vibha-d0x7p9 , vibha-d0xb11 , vibha-d0xgc5 , vibcb-a7mwv0 , vibhb-a7mzs1 , vibhb-a7n5i4 , vibhb-bioh , vibmi-d2y908 , vibmi-d2ygk2 , vibpa-PHAC , vibpa-VPA0468 , vibpa-VPA1467 , vibpa-VPA1496 , vibpa-VPA1595 , vibal-d0wu09 , vibha-d0xda8 , vibmi-u4zh77 , 9vibr-k5u9q4 , vibmi-g0sil5 |
| Title : Lateral transfer of the lux gene cluster - Kasai_2007_J.Biochem_141_231 |
| Author(s) : Kasai S , Okada K , Hoshino A , Iida T , Honda T |
| Ref : J Biochem , 141 :231 , 2007 |
| Abstract : Kasai_2007_J.Biochem_141_231 |
| ESTHER : Kasai_2007_J.Biochem_141_231 |
| PubMedSearch : Kasai_2007_J.Biochem_141_231 |
| PubMedID: 17169972 |
| Gene_locus related to this paper: phopo-luxd , sheha-a0zsg8 , sheha-LUXD |
| Title : Two different Argonaute complexes are required for siRNA generation and heterochromatin assembly in fission yeast - Buker_2007_Nat.Struct.Mol.Biol_14_200 |
| Author(s) : Buker SM , Iida T , Buhler M , Villen J , Gygi SP , Nakayama J , Moazed D |
| Ref : Nat Struct Mol Biol , 14 :200 , 2007 |
| Abstract : Buker_2007_Nat.Struct.Mol.Biol_14_200 |
| ESTHER : Buker_2007_Nat.Struct.Mol.Biol_14_200 |
| PubMedSearch : Buker_2007_Nat.Struct.Mol.Biol_14_200 |
| PubMedID: 17310250 |
| Title : Polychlorinated biphenyl\/biphenyl degrading gene clusters in Rhodococcus sp. K37, HA99, and TA431 are different from well-known bph gene clusters of Rhodococci - Taguchi_2007_Biosci.Biotechnol.Biochem_71_1136 |
| Author(s) : Taguchi K , Motoyama M , Iida T , Kudo T |
| Ref : Biosci Biotechnol Biochem , 71 :1136 , 2007 |
| Abstract : Taguchi_2007_Biosci.Biotechnol.Biochem_71_1136 |
| ESTHER : Taguchi_2007_Biosci.Biotechnol.Biochem_71_1136 |
| PubMedSearch : Taguchi_2007_Biosci.Biotechnol.Biochem_71_1136 |
| PubMedID: 17485846 |
| Gene_locus related to this paper: rhoer-a3kd02 |
| Title : Isolation and characterization of a gene cluster for dibenzofuran degradation in a new dibenzofuran-utilizing bacterium, Paenibacillus sp. strain YK5 - Iida_2006_Arch.Microbiol_184_305 |
| Author(s) : Iida T , Nakamura K , Izumi A , Mukouzaka Y , Kudo T |
| Ref : Arch Microbiol , 184 :305 , 2006 |
| Abstract : Iida_2006_Arch.Microbiol_184_305 |
| ESTHER : Iida_2006_Arch.Microbiol_184_305 |
| PubMedSearch : Iida_2006_Arch.Microbiol_184_305 |
| PubMedID: 16284749 |
| Gene_locus related to this paper: 9bacl-q2wga4 |
| Title : Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae - Makino_2003_Lancet_361_743 |
| Author(s) : Makino K , Oshima K , Kurokawa K , Yokoyama K , Uda T , Tagomori K , Iijima Y , Najima M , Nakano M , Yamashita A , Kubota Y , Kimura S , Yasunaga T , Honda T , Shinagawa H , Hattori M , Iida T |
| Ref : Lancet , 361 :743 , 2003 |
| Abstract : Makino_2003_Lancet_361_743 |
| ESTHER : Makino_2003_Lancet_361_743 |
| PubMedSearch : Makino_2003_Lancet_361_743 |
| PubMedID: 12620739 |
| Gene_locus related to this paper: vibpa-PHAC , vibpa-VP0148 , vibpa-VP0409 , vibpa-VP0429 , vibpa-VP0626 , vibpa-VP0693 , vibpa-VP0837 , vibpa-VP0869 , vibpa-VP0930 , vibpa-VP1025 , vibpa-VP1181 , vibpa-VP1677 , vibpa-VP1678 , vibpa-VP2790 , vibpa-VP2974 , vibpa-VPA0054 , vibpa-VPA0070 , vibpa-VPA0081 , vibpa-VPA0167 , vibpa-VPA0468 , vibpa-VPA0859 , vibpa-VPA0997 , vibpa-VPA1061 , vibpa-VPA1249 , vibpa-VPA1467 , vibpa-VPA1496 , vibpa-VPA1595 , vibpa-y674 , vibpa-y969 |
| Title : Isolation and characterization of dibenzofuran-degrading actinomycetes: analysis of multiple extradiol dioxygenase genes in dibenzofuran-degrading Rhodococcus species - Iida_2002_Biosci.Biotechnol.Biochem_66_1462 |
| Author(s) : Iida T , Mukouzaka Y , Nakamura K , Yamaguchi I , Kudo T |
| Ref : Biosci Biotechnol Biochem , 66 :1462 , 2002 |
| Abstract : Iida_2002_Biosci.Biotechnol.Biochem_66_1462 |
| ESTHER : Iida_2002_Biosci.Biotechnol.Biochem_66_1462 |
| PubMedSearch : Iida_2002_Biosci.Biotechnol.Biochem_66_1462 |
| PubMedID: 12224629 |
| Gene_locus related to this paper: rhosp-DFDC , rhosp-ORF1 |
| Title : Plasmid-borne genes code for an angular dioxygenase involved in dibenzofuran degradation by Terrabacter sp. strain YK3 - Iida_2002_Appl.Environ.Microbiol_68_3716 |
| Author(s) : Iida T , Mukouzaka Y , Nakamura K , Kudo T |
| Ref : Applied Environmental Microbiology , 68 :3716 , 2002 |
| Abstract : Iida_2002_Appl.Environ.Microbiol_68_3716 |
| ESTHER : Iida_2002_Appl.Environ.Microbiol_68_3716 |
| PubMedSearch : Iida_2002_Appl.Environ.Microbiol_68_3716 |
| PubMedID: 12147464 |
| Gene_locus related to this paper: rhosp-DFDC |
| Title : Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12 - Hayashi_2001_DNA.Res_8_11 |
| Author(s) : Hayashi T , Makino K , Ohnishi M , Kurokawa K , Ishii K , Yokoyama K , Han CG , Ohtsubo E , Nakayama K , Murata T , Tanaka M , Tobe T , Iida T , Takami H , Honda T , Sasakawa C , Ogasawara N , Yasunaga T , Kuhara S , Shiba T , Hattori M , Shinagawa H |
| Ref : DNA Research , 8 :11 , 2001 |
| Abstract : Hayashi_2001_DNA.Res_8_11 |
| ESTHER : Hayashi_2001_DNA.Res_8_11 |
| PubMedSearch : Hayashi_2001_DNA.Res_8_11 |
| PubMedID: 11258796 |
| Gene_locus related to this paper: ecoli-rutD , ecoli-bioh , ecoli-C0410 , ecoli-entf , ecoli-fes , ecoli-MCMK , ecoli-mhpc , ecoli-pldb , ecoli-ptrb , ecoli-yafa , ecoli-yaim , ecoli-ybff , ecoli-ycfp , ecoli-ycjy , ecoli-YFBB , ecoli-yghX , ecoli-yhet , ecoli-yjfp , ecoli-YNBC , ecoli-ypfh , ecoli-yqia , ecoli-Z0347 , ecoli-Z1341 , ecoli-Z1930 , ecoli-Z2445 , ecoli-YfhR |
| Title : Complete nucleotide sequences of 93-kb and 3.3-kb plasmids of an enterohemorrhagic Escherichia coli O157:H7 derived from Sakai outbreak - Makino_1998_DNA.Res_5_1 |
| Author(s) : Makino K , Ishii K , Yasunaga T , Hattori M , Yokoyama K , Yutsudo CH , Kubota Y , Yamaichi Y , Iida T , Yamamoto K , Honda T , Han CG , Ohtsubo E , Kasamatsu M , Hayashi T , Kuhara S , Shinagawa H |
| Ref : DNA Research , 5 :1 , 1998 |
| Abstract : Makino_1998_DNA.Res_5_1 |
| ESTHER : Makino_1998_DNA.Res_5_1 |
| PubMedSearch : Makino_1998_DNA.Res_5_1 |
| PubMedID: 9628576 |
| Gene_locus related to this paper: ecoli-ypt1 |