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| Title : A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic - Holden_2013_Genome.Res_23_653 |
| Author(s) : Holden MT , Hsu LY , Kurt K , Weinert LA , Mather AE , Harris SR , Strommenger B , Layer F , Witte W , de Lencastre H , Skov R , Westh H , Zemlickova H , Coombs G , Kearns AM , Hill RL , Edgeworth J , Gould I , Gant V , Cooke J , Edwards GF , McAdam PR , Templeton KE , McCann A , Zhou Z , Castillo-Ramirez S , Feil EJ , Hudson LO , Enright MC , Balloux F , Aanensen DM , Spratt BG , Fitzgerald JR , Parkhill J , Achtman M , Bentley SD , Nubel U |
| Ref : Genome Res , 23 :653 , 2013 |
| Abstract : Holden_2013_Genome.Res_23_653 |
| ESTHER : Holden_2013_Genome.Res_23_653 |
| PubMedSearch : Holden_2013_Genome.Res_23_653 |
| PubMedID: 23299977 |
| Gene_locus related to this paper: staau-SA2240 |
| Title : Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus hospital-acquired infection in the United States - Kos_2012_MBio_3_e00112 |
| Author(s) : Kos VN , Desjardins CA , Griggs A , Cerqueira G , Van Tonder A , Holden MT , Godfrey P , Palmer KL , Bodi K , Mongodin EF , Wortman J , Feldgarden M , Lawley T , Gill SR , Haas BJ , Birren B , Gilmore MS |
| Ref : MBio , 3 : , 2012 |
| Abstract : Kos_2012_MBio_3_e00112 |
| ESTHER : Kos_2012_MBio_3_e00112 |
| PubMedSearch : Kos_2012_MBio_3_e00112 |
| PubMedID: 22617140 |
| Gene_locus related to this paper: staau-SA2240 |
| Title : Genome sequence of Staphylococcus lugdunensis N920143 allows identification of putative colonization and virulence factors - Heilbronner_2011_FEMS.Microbiol.Lett_322_60 |
| Author(s) : Heilbronner S , Holden MT , Van Tonder A , Geoghegan JA , Foster TJ , Parkhill J , Bentley SD |
| Ref : FEMS Microbiology Letters , 322 :60 , 2011 |
| Abstract : Heilbronner_2011_FEMS.Microbiol.Lett_322_60 |
| ESTHER : Heilbronner_2011_FEMS.Microbiol.Lett_322_60 |
| PubMedSearch : Heilbronner_2011_FEMS.Microbiol.Lett_322_60 |
| PubMedID: 21682763 |
| Gene_locus related to this paper: stalh-d3qdw5 , stalh-d3qhh5 , stalu-q0kkp0 |
| Title : A very early-branching Staphylococcus aureus lineage lacking the carotenoid pigment staphyloxanthin - Holt_2011_Genome.Biol.Evol_3_881 |
| Author(s) : Holt DC , Holden MT , Tong SY , Castillo-Ramirez S , Clarke L , Quail MA , Currie BJ , Parkhill J , Bentley SD , Feil EJ , Giffard PM |
| Ref : Genome Biol Evol , 3 :881 , 2011 |
| Abstract : Holt_2011_Genome.Biol.Evol_3_881 |
| ESTHER : Holt_2011_Genome.Biol.Evol_3_881 |
| PubMedSearch : Holt_2011_Genome.Biol.Evol_3_881 |
| PubMedID: 21813488 |
| Gene_locus related to this paper: staau-SA0897 , staau-SA2240 |
| Title : Meticillin-resistant Staphylococcus aureus with a novel mecA homologue in human and bovine populations in the UK and Denmark: a descriptive study - Garcia-Alvarez_2011_Lancet.Infect.Dis_11_595 |
| Author(s) : Garcia-Alvarez L , Holden MT , Lindsay H , Webb CR , Brown DF , Curran MD , Walpole E , Brooks K , Pickard DJ , Teale C , Parkhill J , Bentley SD , Edwards GF , Girvan EK , Kearns AM , Pichon B , Hill RL , Larsen AR , Skov RL , Peacock SJ , Maskell DJ , Holmes MA |
| Ref : Lancet Infect Dis , 11 :595 , 2011 |
| Abstract : Garcia-Alvarez_2011_Lancet.Infect.Dis_11_595 |
| ESTHER : Garcia-Alvarez_2011_Lancet.Infect.Dis_11_595 |
| PubMedSearch : Garcia-Alvarez_2011_Lancet.Infect.Dis_11_595 |
| PubMedID: 21641281 |
| Gene_locus related to this paper: staau-SA0897 , staau-SA2240 |
| Title : Genome sequence of a recently emerged, highly transmissible, multi-antibiotic- and antiseptic-resistant variant of methicillin-resistant Staphylococcus aureus, sequence type 239 (TW) - Holden_2010_J.Bacteriol_192_888 |
| Author(s) : Holden MT , Lindsay JA , Corton C , Quail MA , Cockfield JD , Pathak S , Batra R , Parkhill J , Bentley SD , Edgeworth JD |
| Ref : Journal of Bacteriology , 192 :888 , 2010 |
| Abstract : Holden_2010_J.Bacteriol_192_888 |
| ESTHER : Holden_2010_J.Bacteriol_192_888 |
| PubMedSearch : Holden_2010_J.Bacteriol_192_888 |
| PubMedID: 19948800 |
| Gene_locus related to this paper: staau-LIP , staau-MW0741 , staau-MW2456 , staau-q6gfm6 , staau-SA0569 , staau-SA0572 , staau-SA0897 , staau-SA1143 , staau-SA2240 , staau-SA2306 , staau-SA2422 , staau-SAV0321 , staau-SAV0446 , staau-SAV0457 , staau-SAV0655 , staau-SAV1014 , staau-SAV1765 , staau-SAV1793 , staau-SAV2188 , staau-SAV2350 , staau-SAV2594 |
| Title : The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients - Holden_2009_J.Bacteriol_191_261 |
| Author(s) : Holden MT , Seth-Smith HM , Crossman LC , Sebaihia M , Bentley SD , Cerdeno-Tarraga AM , Thomson NR , Bason N , Quail MA , Sharp S , Cherevach I , Churcher C , Goodhead I , Hauser H , Holroyd N , Mungall K , Scott P , Walker D , White B , Rose H , Iversen P , Mil-Homens D , Rocha EP , Fialho AM , Baldwin A , Dowson C , Barrell BG , Govan JR , Vandamme P , Hart CA , Mahenthiralingam E , Parkhill J |
| Ref : Journal of Bacteriology , 191 :261 , 2009 |
| Abstract : Holden_2009_J.Bacteriol_191_261 |
| ESTHER : Holden_2009_J.Bacteriol_191_261 |
| PubMedSearch : Holden_2009_J.Bacteriol_191_261 |
| PubMedID: 18931103 |
| Gene_locus related to this paper: burcj-b4e794 , 9burk-a0u8m3 , burcj-b4ek59 , burcj-b4ehl7 , burca-q1bk56 , burce-a0a088tsj6 , burcj-b4ecv6 |
| Title : Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis - Holden_2009_PLoS.One_4_e6072 |
| Author(s) : Holden MT , Hauser H , Sanders M , Ngo TH , Cherevach I , Cronin A , Goodhead I , Mungall K , Quail MA , Price C , Rabbinowitsch E , Sharp S , Croucher NJ , Chieu TB , Mai NT , Diep TS , Chinh NT , Kehoe M , Leigh JA , Ward PN , Dowson CG , Whatmore AM , Chanter N , Iversen P , Gottschalk M , Slater JD , Smith HE , Spratt BG , Xu J , Ye C , Bentley S , Barrell BG , Schultsz C , Maskell DJ , Parkhill J |
| Ref : PLoS ONE , 4 :e6072 , 2009 |
| Abstract : Holden_2009_PLoS.One_4_e6072 |
| ESTHER : Holden_2009_PLoS.One_4_e6072 |
| PubMedSearch : Holden_2009_PLoS.One_4_e6072 |
| PubMedID: 19603075 |
| Gene_locus related to this paper: strsu-q302y4 , strsy-a4vus4 , strsy-a4vwf6 |
| Title : Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis - Ward_2009_BMC.Genomics_10_54 |
| Author(s) : Ward PN , Holden MT , Leigh JA , Lennard N , Bignell A , Barron A , Clark L , Quail MA , Woodward J , Barrell BG , Egan SA , Field TR , Maskell D , Kehoe M , Dowson CG , Chanter N , Whatmore AM , Bentley SD , Parkhill J |
| Ref : BMC Genomics , 10 :54 , 2009 |
| Abstract : Ward_2009_BMC.Genomics_10_54 |
| ESTHER : Ward_2009_BMC.Genomics_10_54 |
| PubMedSearch : Ward_2009_BMC.Genomics_10_54 |
| PubMedID: 19175920 |
| Gene_locus related to this paper: stru0-b9drp1 , stru0-b9dsd7 , stru0-b9dum0 , stru0-b9dvu1 , stru0-pepx |
| Title : Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens - Holden_2009_PLoS.Pathog_5_e1000346 |
| Author(s) : Holden MT , Heather Z , Paillot R , Steward KF , Webb K , Ainslie F , Jourdan T , Bason NC , Holroyd NE , Mungall K , Quail MA , Sanders M , Simmonds M , Willey D , Brooks K , Aanensen DM , Spratt BG , Jolley KA , Maiden MC , Kehoe M , Chanter N , Bentley SD , Robinson C , Maskell DJ , Parkhill J , Waller AS |
| Ref : PLoS Pathog , 5 :e1000346 , 2009 |
| Abstract : Holden_2009_PLoS.Pathog_5_e1000346 |
| ESTHER : Holden_2009_PLoS.Pathog_5_e1000346 |
| PubMedSearch : Holden_2009_PLoS.Pathog_5_e1000346 |
| PubMedID: 19325880 |
| Gene_locus related to this paper: stre4-c0mbg3 , stre4-pepx , strem-b4u0u4 , strem-b4u3j8 , strs7-pepx |
| Title : Chlamydia trachomatis: genome sequence analysis of lymphogranuloma venereum isolates - Thomson_2008_Genome.Res_18_161 |
| Author(s) : Thomson NR , Holden MT , Carder C , Lennard N , Lockey SJ , Marsh P , Skipp P , O'Connor CD , Goodhead I , Norbertzcak H , Harris B , Ormond D , Rance R , Quail MA , Parkhill J , Stephens RS , Clarke IN |
| Ref : Genome Res , 18 :161 , 2008 |
| Abstract : Thomson_2008_Genome.Res_18_161 |
| ESTHER : Thomson_2008_Genome.Res_18_161 |
| PubMedSearch : Thomson_2008_Genome.Res_18_161 |
| PubMedID: 18032721 |
| Gene_locus related to this paper: chltr-CT073 , chltr-CT136 |
| Title : The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay - Hjerde_2008_BMC.Genomics_9_616 |
| Author(s) : Hjerde E , Lorentzen MS , Holden MT , Seeger K , Paulsen S , Bason N , Churcher C , Harris D , Norbertczak H , Quail MA , Sanders S , Thurston S , Parkhill J , Willassen NP , Thomson NR |
| Ref : BMC Genomics , 9 :616 , 2008 |
| Abstract : Hjerde_2008_BMC.Genomics_9_616 |
| ESTHER : Hjerde_2008_BMC.Genomics_9_616 |
| PubMedSearch : Hjerde_2008_BMC.Genomics_9_616 |
| PubMedID: 19099551 |
| Gene_locus related to this paper: alisl-b6elz2 , alisl-b6ek45 |
| Title : Complete genome of acute rheumatic fever-associated serotype M5 Streptococcus pyogenes strain manfredo - Holden_2007_J.Bacteriol_189_1473 |
| Author(s) : Holden MT , Scott A , Cherevach I , Chillingworth T , Churcher C , Cronin A , Dowd L , Feltwell T , Hamlin N , Holroyd S , Jagels K , Moule S , Mungall K , Quail MA , Price C , Rabbinowitsch E , Sharp S , Skelton J , Whitehead S , Barrell BG , Kehoe M , Parkhill J |
| Ref : Journal of Bacteriology , 189 :1473 , 2007 |
| Abstract : Holden_2007_J.Bacteriol_189_1473 |
| ESTHER : Holden_2007_J.Bacteriol_189_1473 |
| PubMedSearch : Holden_2007_J.Bacteriol_189_1473 |
| PubMedID: 17012393 |
| Gene_locus related to this paper: strpy-ESTA , strpy-PEPXP , strpy-SPY1308 , strpy-SPYM18.1727 |
| Title : Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes - Sebaihia_2007_Genome.Res_17_1082 |
| Author(s) : Sebaihia M , Peck MW , Minton NP , Thomson NR , Holden MT , Mitchell WJ , Carter AT , Bentley SD , Mason DR , Crossman L , Paul CJ , Ivens A , Wells-Bennik MH , Davis IJ , Cerdeno-Tarraga AM , Churcher C , Quail MA , Chillingworth T , Feltwell T , Fraser A , Goodhead I , Hance Z , Jagels K , Larke N , Maddison M , Moule S , Mungall K , Norbertczak H , Rabbinowitsch E , Sanders M , Simmonds M , White B , Whithead S , Parkhill J |
| Ref : Genome Res , 17 :1082 , 2007 |
| Abstract : Sebaihia_2007_Genome.Res_17_1082 |
| ESTHER : Sebaihia_2007_Genome.Res_17_1082 |
| PubMedSearch : Sebaihia_2007_Genome.Res_17_1082 |
| PubMedID: 17519437 |
| Gene_locus related to this paper: clobh-A5I3I2 , clobh-A51055 , clob1-a7fqm2 , clob1-a7fv94 , clobl-a7gbn0 , clobh-pip , clobh-a5i3m0 |
| Title : The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome - Sebaihia_2006_Nat.Genet_38_779 |
| Author(s) : Sebaihia M , Wren BW , Mullany P , Fairweather NF , Minton N , Stabler R , Thomson NR , Roberts AP , Cerdeno-Tarraga AM , Wang H , Holden MT , Wright A , Churcher C , Quail MA , Baker S , Bason N , Brooks K , Chillingworth T , Cronin A , Davis P , Dowd L , Fraser A , Feltwell T , Hance Z , Holroyd S , Jagels K , Moule S , Mungall K , Price C , Rabbinowitsch E , Sharp S , Simmonds M , Stevens K , Unwin L , Whithead S , Dupuy B , Dougan G , Barrell B , Parkhill J |
| Ref : Nat Genet , 38 :779 , 2006 |
| Abstract : Sebaihia_2006_Nat.Genet_38_779 |
| ESTHER : Sebaihia_2006_Nat.Genet_38_779 |
| PubMedSearch : Sebaihia_2006_Nat.Genet_38_779 |
| PubMedID: 16804543 |
| Gene_locus related to this paper: pepdi-t4eki5 , clod6-q18a60 , clod6-q183v0 , clodi-HYDD , clodr-c9ynf2 , pepd6-pip , pepdi-g6brr4 |
| Title : The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081 - Thomson_2006_PLoS.Genet_2_e206 |
| Author(s) : Thomson NR , Howard S , Wren BW , Holden MT , Crossman L , Challis GL , Churcher C , Mungall K , Brooks K , Chillingworth T , Feltwell T , Abdellah Z , Hauser H , Jagels K , Maddison M , Moule S , Sanders M , Whitehead S , Quail MA , Dougan G , Parkhill J , Prentice MB |
| Ref : PLoS Genet , 2 :e206 , 2006 |
| Abstract : Thomson_2006_PLoS.Genet_2_e206 |
| ESTHER : Thomson_2006_PLoS.Genet_2_e206 |
| PubMedSearch : Thomson_2006_PLoS.Genet_2_e206 |
| PubMedID: 17173484 |
| Gene_locus related to this paper: yere8-a1jik0 , yere8-a1jmx1 , yere8-a1jrp7 , yere8-bioh , yere8-menh , yere8-y3204 , yeren-fes , yeren-YPLA , yeren-YqiA , yermo-c4sfz7 , yerpe-y1616 , yerpe-YPO1501 , yerbe-c4rym7 |
| Title : Complete genome sequence and lytic phase transcription profile of a Coccolithovirus - Wilson_2005_Science_309_1090 |
| Author(s) : Wilson WH , Schroeder DC , Allen MJ , Holden MT , Parkhill J , Barrell BG , Churcher C , Hamlin N , Mungall K , Norbertczak H , Quail MA , Price C , Rabbinowitsch E , Walker D , Craigon M , Roy D , Ghazal P |
| Ref : Science , 309 :1090 , 2005 |
| Abstract : Wilson_2005_Science_309_1090 |
| ESTHER : Wilson_2005_Science_309_1090 |
| PubMedSearch : Wilson_2005_Science_309_1090 |
| PubMedID: 16099989 |
| Gene_locus related to this paper: 9phyc-q4a2b6 , 9phyc-q4a3c9 , ehv86-q4a332 |
| Title : The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation - Thomson_2005_Genome.Res_15_629 |
| Author(s) : Thomson NR , Yeats C , Bell K , Holden MT , Bentley SD , Livingstone M , Cerdeno-Tarraga AM , Harris B , Doggett J , Ormond D , Mungall K , Clarke K , Feltwell T , Hance Z , Sanders M , Quail MA , Price C , Barrell BG , Parkhill J , Longbottom D |
| Ref : Genome Res , 15 :629 , 2005 |
| Abstract : Thomson_2005_Genome.Res_15_629 |
| ESTHER : Thomson_2005_Genome.Res_15_629 |
| PubMedSearch : Thomson_2005_Genome.Res_15_629 |
| PubMedID: 15837807 |
| Gene_locus related to this paper: chlab-q5l5y2 , chlab-q5l6t6 |
| Title : Extensive DNA inversions in the B. fragilis genome control variable gene expression - Cerdeno-Tarraga_2005_Science_307_1463 |
| Author(s) : Cerdeno-Tarraga AM , Patrick S , Crossman LC , Blakely G , Abratt V , Lennard N , Poxton I , Duerden B , Harris B , Quail MA , Barron A , Clark L , Corton C , Doggett J , Holden MT , Larke N , Line A , Lord A , Norbertczak H , Ormond D , Price C , Rabbinowitsch E , Woodward J , Barrell B , Parkhill J |
| Ref : Science , 307 :1463 , 2005 |
| Abstract : Cerdeno-Tarraga_2005_Science_307_1463 |
| ESTHER : Cerdeno-Tarraga_2005_Science_307_1463 |
| PubMedSearch : Cerdeno-Tarraga_2005_Science_307_1463 |
| PubMedID: 15746427 |
| Gene_locus related to this paper: bacfn-q5l8p8 , bacfn-q5lef1 , bacfn-q5lh43 , bacfn-q5lhv2 , bacfr-q64mh3 , bacfr-q64n33 , bacfr-q64qs3 , bacfr-q64t24 , bacfr-q64uj8 , bacfr-q64vx6 , bacfr-q64wh2 , bacfr-q64xp9 , bacfr-q650j0 |