SUPAGRO





UM2


CNRS

MACSE Barcode Alignments

This page provides alignments of barcoding sequences obtained in April 2020 by using the MACSE barcoding pipelines on sequences collected from the BOLD database. The pipeline is fully described in:

Plantae

taxonomic group marker code update ref alignment ref sequence enriched alignment nb seq in the alignment nb seq in BOLD alignment stats
Rhodophyta rbcL 11 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 7637 7725 align_stat.gz
Chlorophyta rbcL 11 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 4564 4643 align_stat.gz
Bryophyta rbcL 11 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 2173 2202 align_stat.gz
Lycopodiophyta rbcL 11 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 531 548 align_stat.gz
Pteridophyta rbcL 11 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 7479 7601 align_stat.gz
Pinophyta rbcL 11 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 2872 2921 align_stat.gz
Magnoliophyta rbcL 11 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 121302 121989 align_stat.gz
Magnoliophyta matK 11 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 63250 107413 align_stat.gz

Metazoa

taxonomic group marker code update ref alignment ref sequence enriched alignment nb seq in the alignment nb seq in BOLD alignment stats
Porifera COI 4 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 3936 4149 align_stat.gz
Cnidaria COI 4 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 15581 16645 align_stat.gz
Ctenophora COI 4 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 228 248 align_stat.gz
Acanthocephala COI 5 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 1326 1494 align_stat.gz
Brachiopoda COI 5 21-Oct-2020 NA* refSeq.fasta NT_alignment.gz 159 163 NA*
Bryozoa COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 1718 1754 align_stat.gz
Gastrotricha COI 5 21-Oct-2020 NA* refSeq.fasta NT_alignment.gz 295 306 NA*
Platyhelminthes COI 9 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 8997 10593 align_stat.gz
Annelida COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 48418 48903 align_stat.gz
Sipuncula COI 5 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 497 513 align_stat.gz
Mollusca COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 150823 155253 align_stat.gz
Nemertea COI 5 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 3002 3078 align_stat.gz
Chaetognatha COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 993 1028 align_stat.gz
Rotifera COI 5 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 8246 8366 align_stat.gz
Kinorhyncha COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 384 389 align_stat.gz
Nematomorpha COI 5 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 319 327 align_stat.gz
Nematoda COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 15966 17117 align_stat.gz
Tardigrada COI 5 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 1063 1092 align_stat.gz
Onychophora COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 1102 1138 align_stat.gz

Arthropoda

taxonomic group marker code update ref alignment ref sequence enriched alignment nb seq in the alignment nb seq in BOLD alignment stats
Arachnida COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 243693 245368 align_stat.gz
Pycnogonida COI 5 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 2179 2234 align_stat.gz
Chilopoda COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 2335 2390 align_stat.gz
Diplopoda COI 5 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 3176 3435 align_stat.gz
Malacostraca COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 103082 106448 align_stat.gz
Ostracoda COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 3421 3500 align_stat.gz
Collembola COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 121381 122146 align_stat.gz
Blattodea COI 5 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 10683 10984 align_stat.gz

Insecta

taxonomic group marker code update ref alignment ref sequence enriched alignment nb seq in the alignment nb seq in BOLD alignment stats
Archaeognatha COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 1613 1657 align_stat.gz
Diptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 1901802 1907406 align_stat.gz
Coleoptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 344667 348961 align_stat.gz
Dermaptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 1299 1398 align_stat.gz
Embioptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 270 275 align_stat.gz
Ephemeroptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 23310 23812 align_stat.gz
Hemiptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 226066 229127 align_stat.gz
Hymenoptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 645143 659513 align_stat.gz
Lepidoptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 1132214 1139810 align_stat.gz
Mantodea COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 2030 2065 align_stat.gz
Mecoptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 878 895 align_stat.gz
Megaloptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 1907 1944 align_stat.gz
Neuroptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 9060 9215 align_stat.gz
Odonata COI 5 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 15411 16344 align_stat.gz
Orthoptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 28103 29572 align_stat.gz
Phasmatodea COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 1679 1820 align_stat.gz
Plecoptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 13100 13249 align_stat.gz
Psocodea COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 30661 32910 align_stat.gz
Raphidioptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 167 174 align_stat.gz
Siphonaptera COI 5 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 1556 1614 align_stat.gz
Strepsiptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 342 370 align_stat.gz
Thysanoptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 19445 19916 align_stat.gz
Trichoptera COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 50747 52412 align_stat.gz
Apidae COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 20009 20609 align_stat.gz
Formicidae COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 121494 121954 align_stat.gz
Vespidae COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 6275 6487 align_stat.gz
Culicidae COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 47046 47267 align_stat.gz
Drosophilidae COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 25209 25548 align_stat.gz
Geometridae COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 116489 117512 align_stat.gz
Lycaenidae COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 20567 20897 align_stat.gz
Noctuidae COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 89992 91124 align_stat.gz
Nymphalidae COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 50233 51917 align_stat.gz
Papilionidae COI 5 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 6186 6460 align_stat.gz
Pieridae COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 11582 11955 align_stat.gz
Pyralidae COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 28289 28424 align_stat.gz
Saturniidae COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 29620 29973 align_stat.gz
Sphingidae COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 24018 24367 align_stat.gz
Uraniidae COI 5 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 1745 1794 align_stat.gz

Chordata

taxonomic group marker code update ref alignment ref sequence enriched alignment nb seq in the alignment nb seq in BOLD alignment stats
Echinodermata COI 9 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 26092 26574 align_stat.gz
Hemichordata COI 9 21-Oct-2020 NA* refSeq.fasta NT_alignment.gz 127 135 NA*
Cephalochordata COI 5 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 383 410 align_stat.gz
Tunicata COI 13 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 3455 3735 align_stat.gz
Cyclostomata COI 2 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 891 911 align_stat.gz
Chondrichthyes COI 2 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 18459 18781 align_stat.gz
Actinopterygii COI 2 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 226605 230024 align_stat.gz
Sarcopterygii COI 2 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 118 127 align_stat.gz
Amphibia COI 2 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 19122 19488 align_stat.gz
Lepidosauria COI 2 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 14079 14464 align_stat.gz
Testudines COI 2 21-Oct-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 1782 1904 align_stat.gz
Crocodylia COI 2 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 658 713 align_stat.gz
Aves COI 2 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 44651 45397 align_stat.gz
Mammalia COI 2 29-Apr-2020 refAlign.fasta refSeq.fasta NT_alignment.gz 117363 121180 align_stat.gz


*These three data sets containing few sequences were directly aligned using the OMM_MACSE pipeline