Download documents related to MACSE v2.03:

• Download the tutorial file: doc_MACSE_v2.03.pdf
• Download the archive containing data files associated to the tutorial paper "Aligning protein-coding nucleotide sequences with MACSE" (submitted to Methods in Molecular Biology): Examples_MACSE_Methods_In_Mol_Biol_2020.zip
• Download the archive containing data files associated to the tutorial: Example_Doc_MACSE_v2.03.zip

Download documents related to MACSE v1.2:

• Download the tutorial file: docMacse.pdf
• Download the archive containing data files associated to the tutorial: docMacse.zip

Barcoding alignments build with MACSE barcoding pipelines

For each dataset the sequences gathered from the BOLD database and the reference sequence are provided in the following zip archive and all result files are available in this zip archive.

taxon	marker	reference alignment NT	reference alignment AA	nb sequences in the final alignment
Mammalia	COI	ref_Align_NT	ref_Align_AA	117,363
Formicidae	COI	ref_Align_NT	ref_Align_AA	121,494
Magnoliophyta	matK	ref_Align_NT	ref_Align_AA	63,250
Magnoliophyta	rbcL	ref_Align_NT	ref_Align_AA	121,302

We use our pipeline to align barcoding sequences of numerous other taxonomic groups, all resulting alignments are available on MACSE Barcoding page.