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psepu-PP3943

Pseudomonas putida N-formylmaleamic acid deformylase, alpha/beta fold family

Comment

Conversion of N-formylmaleamic acid to formic and maleamic acid is catalyzed by the NicD proteina from gene cluster (nic genes)), the only deformylase described so far whose catalytic triad is similar to that of some members of the alpha\/beta-hydrolase fold superfamily. Other strains: Pseudomonas putida (strains KT2440\; W619\; ND6\; DOT-T1E\; TRO1\; S12\; F1 \/ ATCC 700007\; H8234\; NBRC 14164\; S13.1.2\; GB-1)

Relationship

Family : NFM-deformylase

Block : X

Position in NCBI Life Tree : Pseudomonas putida

Molecular evidence

No mutation

No structure

No kinetic

No disease

No inhibitor

Database

Sequence

Peptide

MSTFVAGGNV SANGIRQHYL RYGGKGHALI LVPGITSPAI TWGFVAERLG HYFDTYVLDV RGRGLSSSGP DLDYGTDACA ADIPAFAAAL GLDSYHLLGH SMGARFAIRA AAQGAPGLQR LVLVDPPVSG PGRRAYPSKL PWYVDSIRQA TVGMSGDDMR AFCATWSDEQ LALRAEWLHT CYEPAIVRAF DDFHEVDIHQ YLPAVRQPAL LMVAGRGGVI EPRDIAEMRE LKPDIQVAYV DNAGHMIPWD DLDGFFAAFG DFLDHPLV

References

Title : The Complete Genome Sequence of Pseudomonas putida NBRC 14164T Confirms High Intraspecies Variation - Ohji_2014_Genome.Announc_2_e00029
Author(s) : Ohji S , Yamazoe A , Hosoyama A , Tsuchikane K , Ezaki T , Fujita N
Ref : Genome Announc , 2 : , 2014
Abstract : Ohji_2014_Genome.Announc_2_e00029
ESTHER : Ohji_2014_Genome.Announc_2_e00029
PubMedSearch : Ohji_2014_Genome.Announc_2_e00029
PubMedID: 24526630
Gene_locus related to this paper: psepu-PIP , psepu-PP3943 , psepu-PP4249 , psepu-q9wwz4

Title : Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome - Udaondo_2013_Microb.Biotechnol_6_598
Author(s) : Udaondo Z , Molina L , Daniels C , Gomez MJ , Molina-Henares MA , Matilla MA , Roca A , Fernandez M , Duque E , Segura A , Ramos JL
Ref : Microb Biotechnol , 6 :598 , 2013
Abstract : Udaondo_2013_Microb.Biotechnol_6_598
ESTHER : Udaondo_2013_Microb.Biotechnol_6_598
PubMedSearch : Udaondo_2013_Microb.Biotechnol_6_598
PubMedID: 23815283
Gene_locus related to this paper: psepu-PIP , psepu-PP3943 , psepu-PP4249 , psepu-q9wwz4

Title : Complete Genome Sequence of a Pseudomonas putida Clinical Isolate, Strain H8234 - Molina_2013_Genome.Announc_1_e00496
Author(s) : Molina L , Bernal P , Udaondo Z , Segura A , Ramos JL
Ref : Genome Announc , 1 :e00496 , 2013
Abstract : Molina_2013_Genome.Announc_1_e00496
ESTHER : Molina_2013_Genome.Announc_1_e00496
PubMedSearch : Molina_2013_Genome.Announc_1_e00496
PubMedID: 23868128
Gene_locus related to this paper: psepu-PIP , psepu-PP1500 , psepu-PP3943 , psepu-PP4249 , psepu-q9wwz4

Title : Complete genome sequence of the naphthalene-degrading Pseudomonas putida strain ND6 - Li_2012_J.Bacteriol_194_5154
Author(s) : Li S , Zhao H , Li Y , Niu S , Cai B
Ref : Journal of Bacteriology , 194 :5154 , 2012
Abstract : Li_2012_J.Bacteriol_194_5154
ESTHER : Li_2012_J.Bacteriol_194_5154
PubMedSearch : Li_2012_J.Bacteriol_194_5154
PubMedID: 22933774
Gene_locus related to this paper: psepu-PIP , psepu-PP3943 , psepu-PP4249 , psepu-q9wwz4

Title : A finely tuned regulatory circuit of the nicotinic acid degradation pathway in Pseudomonas putida - Jimenez_2011_Environ.Microbiol_13_1718
Author(s) : Jimenez JI , Juarez JF , Garcia JL , Diaz E
Ref : Environ Microbiol , 13 :1718 , 2011
Abstract : Jimenez_2011_Environ.Microbiol_13_1718
ESTHER : Jimenez_2011_Environ.Microbiol_13_1718
PubMedSearch : Jimenez_2011_Environ.Microbiol_13_1718
PubMedID: 21450002
Gene_locus related to this paper: psepu-PP3943

Title : Deciphering the genetic determinants for aerobic nicotinic acid degradation: the nic cluster from Pseudomonas putida KT2440 - Jimenez_2008_Proc.Natl.Acad.Sci.U.S.A_105_11329
Author(s) : Jimenez JI , Canales A , Jimenez-Barbero J , Ginalski K , Rychlewski L , Garcia JL , Diaz E
Ref : Proc Natl Acad Sci U S A , 105 :11329 , 2008
Abstract : Jimenez_2008_Proc.Natl.Acad.Sci.U.S.A_105_11329
ESTHER : Jimenez_2008_Proc.Natl.Acad.Sci.U.S.A_105_11329
PubMedSearch : Jimenez_2008_Proc.Natl.Acad.Sci.U.S.A_105_11329
PubMedID: 18678916
Gene_locus related to this paper: psepu-PP3943

Title : Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440 - Nelson_2002_Environ.Microbiol_4_799
Author(s) : Nelson KE , Weinel C , Paulsen IT , Dodson RJ , Hilbert H , Martins dos Santos VA , Fouts DE , Gill SR , Pop M , Holmes M , Brinkac L , Beanan M , DeBoy RT , Daugherty S , Kolonay J , Madupu R , Nelson W , White O , Peterson J , Khouri H , Hance I , Chris Lee P , Holtzapple E , Scanlan D , Tran K , Moazzez A , Utterback T , Rizzo M , Lee K , Kosack D , Moestl D , Wedler H , Lauber J , Stjepandic D , Hoheisel J , Straetz M , Heim S , Kiewitz C , Eisen JA , Timmis KN , Dusterhoft A , Tummler B , Fraser CM
Ref : Environ Microbiol , 4 :799 , 2002
Abstract : Nelson_2002_Environ.Microbiol_4_799
ESTHER : Nelson_2002_Environ.Microbiol_4_799
PubMedSearch : Nelson_2002_Environ.Microbiol_4_799
PubMedID: 12534463
Gene_locus related to this paper: psep1-a5wa77 , psep1-a5wax1 , psepk-q88nk6 , psepk-q88qt0 , psepu-acoc , psepu-BIOH , psepu-bpest , psepu-ESTB , psepu-LIP , psepu-METX , psepu-PHAC1 , psepu-PHAC2 , psepu-PHAG , psepu-PHAZ , psepu-PIP , psepu-PP0375 , psepu-PP0498 , psepu-PP0532 , psepu-PP1064 , psepu-PP1184 , psepu-PP1310 , psepu-PP1500 , psepu-PP1617 , psepu-PP1829 , psepu-PP1979 , psepu-PP2083 , psepu-PP2201 , psepu-PP2236 , psepu-PP2567 , psepu-PP2804 , psepu-PP2934 , psepu-PP3195 , psepu-PP3367 , psepu-PP3404 , psepu-PP3645 , psepu-PP3807 , psepu-PP3812 , psepu-PP3943 , psepu-PP4164 , psepu-PP4165 , psepu-PP4178 , psepu-PP4249 , psepu-PP4540 , psepu-PP4551 , psepu-PP4583 , psepu-PP4624 , psepu-PP4634 , psepu-PP4916 , psepu-PP5117 , psepu-PP5161 , psepu-PP5167 , psepu-PPSD , psepu-Q8KQK1 , psepu-q9wwz4