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braja-pcaD

Bradyrhizobium japonicum; Bradyrhizobium sp.; Bradyrhizobium diazoefficiens pcaD Beta-ketoadipate enol-lactone hydrolase

Comment

Other strains: Bradyrhizobium japonicum (USDA 6\; SEMIA 5079)\; Bradyrhizobium sp. (CCGE-LA001\; S23321\; YR681\; WSM471\; WSM1253)\; Bradyrhizobium diazoefficiens (SEMIA 5080\; JCM 10833 \/ IAM 13628 \/ NBRC 14792 \/ USDA 110)

Relationship

Family : Carboxymethylbutenolide_lactonase

Block : X

Position in NCBI Life Tree : Bradyrhizobium japonicum

Molecular evidence

No mutation

No structure

No kinetic

No disease

No substrate

No inhibitor

Database

Sequence

Peptide

MPMIDADGCL INVSVEGRDG GPTLMLSNSL GCTLQMWEPQ MKALTQVFRV IRYDRRGHGK SNVPPGPYTM ERFGRDVLAI LNDLNIEKVH WCGLSMGGMV GQWLGANAPE RFGKLILANT SCYYAEPTKW LERIDAVKKG GIAAVADAVI AGWLTQDFRE REPDITARMK AMLLASPVEG YLACCEALST LDQRELLPKI KSPTLVIAGR HDMATPISAG ELIRSKIPGA NMTIIDAAHI SNVEQPHAFT DAVVGFLTQR

References

Title : Comparative genomics of Bradyrhizobium japonicum CPAC 15 and Bradyrhizobium diazoefficiens CPAC 7: elite model strains for understanding symbiotic performance with soybean - Siqueira_2014_BMC.Genomics_15_420
Author(s) : Siqueira AF , Ormeno-Orrillo E , Souza RC , Rodrigues EP , Almeida LG , Barcellos FG , Batista JS , Nakatani AS , Martinez-Romero E , Vasconcelos AT , Hungria M
Ref : BMC Genomics , 15 :420 , 2014
Abstract : Siqueira_2014_BMC.Genomics_15_420
ESTHER : Siqueira_2014_BMC.Genomics_15_420
PubMedSearch : Siqueira_2014_BMC.Genomics_15_420
PubMedID: 24888481
Gene_locus related to this paper: braja-BLL5160 , braja-pcaD , brajp-g7d382 , brajp-g7daf5 , brajp-g7daf6

Title : Symbiont shift towards Rhizobium nodulation in a group of phylogenetically related Phaseolus species - Servin-Garciduenas_2014_Mol.Phylogenet.Evol_79_1
Author(s) : Servin-Garciduenas LE , Zayas-Del Moral A , Ormeno-Orrillo E , Rogel MA , Delgado-Salinas A , Sanchez F , Martinez-Romero E
Ref : Mol Phylogenet Evol , 79 :1 , 2014
Abstract : Servin-Garciduenas_2014_Mol.Phylogenet.Evol_79_1
ESTHER : Servin-Garciduenas_2014_Mol.Phylogenet.Evol_79_1
PubMedSearch : Servin-Garciduenas_2014_Mol.Phylogenet.Evol_79_1
PubMedID: 24952318
Gene_locus related to this paper: braja-pcaD , 9brad-w1jnw7 , 9brad-w1jyy0

Title : Complete genome sequence of Bradyrhizobium sp. S23321: insights into symbiosis evolution in soil oligotrophs - Okubo_2012_Microbes.Environ_27_306
Author(s) : Okubo T , Tsukui T , Maita H , Okamoto S , Oshima K , Fujisawa T , Saito A , Futamata H , Hattori R , Shimomura Y , Haruta S , Morimoto S , Wang Y , Sakai Y , Hattori M , Aizawa S , Nagashima KV , Masuda S , Hattori T , Yamashita A , Bao Z , Hayatsu M , Kajiya-Kanegae H , Yoshinaga I , Sakamoto K , Toyota K , Nakao M , Kohara M , Anda M , Niwa R , Jung-Hwan P , Sameshima-Saito R , Tokuda S , Yamamoto S , Yokoyama T , Akutsu T , Nakamura Y , Nakahira-Yanaka Y , Takada Hoshino Y , Hirakawa H , Mitsui H , Terasawa K , Itakura M , Sato S , Ikeda-Ohtsubo W , Sakakura N , Kaminuma E , Minamisawa K
Ref : Microbes Environ , 27 :306 , 2012
Abstract : Okubo_2012_Microbes.Environ_27_306
ESTHER : Okubo_2012_Microbes.Environ_27_306
PubMedSearch : Okubo_2012_Microbes.Environ_27_306
PubMedID: 22452844
Gene_locus related to this paper: 9brad-i0g2u8 , 9brad-i0gf89 , braja-pcaD , 9brad-i0fzh8 , 9brad-i0gfv2 , 9brad-i0g2y4

Title : Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides - Brown_2012_J.Bacteriol_194_5991
Author(s) : Brown SD , Utturkar SM , Klingeman DM , Johnson CM , Martin SL , Land ML , Lu TY , Schadt CW , Doktycz MJ , Pelletier DA
Ref : Journal of Bacteriology , 194 :5991 , 2012
Abstract : Brown_2012_J.Bacteriol_194_5991
ESTHER : Brown_2012_J.Bacteriol_194_5991
PubMedSearch : Brown_2012_J.Bacteriol_194_5991
PubMedID: 23045501
Gene_locus related to this paper: 9burk-j0kac2 , 9burk-j0kqh2 , 9burk-j1epu6 , 9rhiz-j3hsc6 , agrrk-b9jlj2 , agrrk-b9jlr1 , braja-pcaD , brebn-c0z527 , psepf-q3k919 , psepu-PIP , 9rhiz-j2b0t6 , 9rhiz-j2b5v7 , 9sphn-j2csl5 , 9sphn-j2da91 , 9sphn-j2dss9 , 9burk-j2kvv7 , 9rhiz-j2l8v8 , 9rhiz-j2lcz2 , 9entr-j2lgp0 , 9flao-j2sqj3 , 9brad-j2w5i6 , 9brad-j2w6z0 , 9sphn-j2w924 , 9sphn-j2wk32 , 9sphn-j2wv03 , 9sphn-j2zvl4 , 9caul-j3aar6 , 9sphn-j3aj11 , 9caul-j3aj83 , 9caul-j3an06 , 9sphn-j3aqd5 , 9caul-j3ati4 , 9entr-j3c1e1 , 9brad-j3cpx3 , 9burk-j3cy68 , 9entr-j3de95 , 9rhiz-j3hvd3 , 9brad-j3hza4 , 9rhiz-j2asm7 , 9rhiz-j2idv1 , 9burk-j2l7t2 , 9psed-j2lun4 , 9psed-j2p2u8 , 9psed-j2pci7 , 9psed-j3dng2 , 9psed-j3dpc9 , 9psed-j3dtv9 , 9psed-j3ebe9 , 9psed-j3ey90 , 9psed-j3ezm7 , 9psed-j3g853 , 9psed-j3gq12 , 9psed-j3har6 , 9psed-j3hd18 , 9brad-j3i495 , 9brad-j3hvp0 , 9rhiz-j3htx9 , 9sphn-j2lbm8 , 9psed-j3a9q8 , 9psed-j2n8k4 , 9sphn-j2gm31 , 9rhiz-j2kud1 , 9burk-j2kv91 , 9burk-j2ktg3 , 9psed-j2na56 , 9psed-w6ve15 , 9psed-j2wmk3 , 9psed-j2rmx2 , 9psed-j2t106 , 9psed-j3gvm6 , 9psed-j2q9u0 , 9psed-j2wr89 , 9burk-j3d9h4 , 9burk-j3cg20 , 9burk-j0kgm2 , 9entr-j2ua00 , 9entr-j2v6d3 , 9entr-j3diy7 , 9burk-j3dit4 , 9rhiz-j3bsd5 , 9psed-j2x4z3 , 9caul-j2gqn4 , 9caul-j2gw95 , 9sphn-j2pjy3 , 9sphn-j2ws91 , 9sphn-j2zyh1 , 9burk-j2lbr7 , 9caul-j2gky7 , 9rhiz-j2ww97 , 9rhiz-j3hls4 , 9rhiz-j2ic95 , 9psed-w6w1j7 , 9rhiz-j2l3f6 , 9psed-a0a068aip7 , 9psed-s2jxx1 , 9burk-j1eha9 , sphya-a0a084e4h2 , 9burk-j3cy50 , 9psed-j3e058 , 9psed-w6v6a4 , 9psed-j3gxm0 , 9rhiz-j2lcu3 , 9rhiz-j2rcz3 , 9burk-j2m4l9 , 9psed-j3b3h3 , 9burk-j3dhf9 , 9burk-j2vbc2 , 9psed-j2nei8 , 9burk-j2vlm0 , 9bacl-l5mp14 , 9psed-w6wbi3 , 9sphn-j2dbb2 , 9rhiz-j2ij37 , 9rhiz-j2kw28 , 9psed-j2n6d9 , 9caul-j2pfh5 , 9sphn-j2wci4 , 9psed-j2wi64 , 9sphn-j3ap33 , 9rhiz-j3hp99 , 9psed-j3ivu6 , 9rhiz-j2v1w2 , 9psed-j2t819 , 9flao-j2krx6 , 9burk-j1eg31 , 9burk-j2kx41 , 9rhiz-j2l0y1 , 9sphn-j2gj61

Title : Complete Genome Sequence of the Soybean Symbiont Bradyrhizobium japonicum Strain USDA6T - Kaneko_2011_Genes.(Basel)_2_763
Author(s) : Kaneko T , Maita H , Hirakawa H , Uchiike N , Minamisawa K , Watanabe A , Sato S
Ref : Genes (Basel) , 2 :763 , 2011
Abstract : Kaneko_2011_Genes.(Basel)_2_763
ESTHER : Kaneko_2011_Genes.(Basel)_2_763
PubMedSearch : Kaneko_2011_Genes.(Basel)_2_763
PubMedID: 24710291
Gene_locus related to this paper: braja-pcaD , brajp-g7d382 , brajp-g7daf5 , brajp-g7daf6 , brajp-g7dfn9 , brajp-g7dbr2 , brajp-g7dmu1 , brajp-g7dnh7

Title : Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110 - Kaneko_2002_DNA.Res_9_189
Author(s) : Kaneko T , Nakamura Y , Sato S , Minamisawa K , Uchiumi T , Sasamoto S , Watanabe A , Idesawa K , Iriguchi M , Kawashima K , Kohara M , Matsumoto M , Shimpo S , Tsuruoka H , Wada T , Yamada M , Tabata S
Ref : DNA Research , 9 :189 , 2002
Abstract : Kaneko_2002_DNA.Res_9_189
ESTHER : Kaneko_2002_DNA.Res_9_189
PubMedSearch : Kaneko_2002_DNA.Res_9_189
PubMedID: 12597275
Gene_locus related to this paper: braja-BLL0118 , braja-BLL0272 , braja-BLL0546 , braja-BLL0558 , braja-BLL0837 , braja-BLL0839 , braja-BLL1016 , braja-BLL1128 , braja-BLL1234 , braja-BLL1350 , braja-BLL1401 , braja-BLL2323 , braja-BLL2387 , braja-BLL2443 , braja-BLL2527 , braja-BLL2884 , braja-BLL2902 , braja-BLL3246 , braja-BLL3359 , braja-BLL3416 , braja-BLL3418 , braja-BLL3470 , braja-BLL3759 , braja-BLL3777 , braja-BLL4001 , braja-BLL4189 , braja-BLL4284 , braja-BLL4335 , braja-BLL4360 , braja-BLL4548 , braja-BLL4985 , braja-BLL4989 , braja-BLL4997 , braja-BLL5160 , braja-BLL5514 , braja-BLL5588 , braja-BLL5740 , braja-bll6073 , braja-BLL6264 , braja-BLL6275 , braja-BLL6428 , braja-bll6463 , braja-BLL6574 , braja-BLL6577 , braja-BLL6614 , braja-bll6820 , braja-BLL6841 , braja-BLL6890 , braja-BLL6974 , braja-BLL7123 , braja-BLL7368 , braja-BLL7370 , braja-BLL7497 , braja-BLL7506 , braja-BLL7509 , braja-BLL7545 , braja-BLL7692 , braja-BLL7862 , braja-BLL8011 , braja-BLL8277 , braja-BLR0230 , braja-BLR0418 , braja-BLR0711 , braja-BLR0899 , braja-BLR0908 , braja-BLR1078 , braja-BLR1197 , braja-BLR1251 , braja-BLR2261 , braja-BLR2321 , braja-BLR2487 , braja-BLR2879 , braja-BLR2885 , braja-BLR2889 , braja-BLR2982 , braja-BLR3322 , braja-BLR3456 , braja-BLR3519 , braja-blr3732 , braja-BLR3878 , braja-BLR4157 , braja-BLR4181 , braja-BLR5346 , braja-BLR5359 , braja-BLR6083 , braja-BLR6127 , braja-BLR6186 , braja-BLR6271 , braja-BLR6465 , braja-BLR6576 , braja-BLR6677 , braja-BLR6703 , braja-BLR6960 , braja-BLR6965 , braja-BLR7068 , braja-BLR7144 , braja-BLR7443 , braja-BLR7556 , braja-BLR7622 , braja-BLR7741 , braja-BLR7809 , braja-BLR7810 , braja-BLR7894 , braja-BLR8188 , braja-dhaa , braja-EPHA , braja-EPHB , braja-ID587 , braja-ID930 , braja-METX , braja-pcaD , braja-PIP , braja-PLDB , braja-PTRB , braja-q89c18 , braja-q89c36 , braja-q89mj3 , braja-q89ql9 , braja-q89y23

Title : Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110 (supplement) -
Author(s) : Kaneko T , Nakamura Y , Sato S , Minamisawa K , Uchiumi T , Sasamoto S , Watanabe A , Idesawa K , Iriguchi M , Kawashima K , Kohara M , Matsumoto M , Shimpo S , Tsuruoka H , Wada T , Yamada M , Tabata S
Ref : DNA Research , 9 :225 , 2002
PubMedID: 12597279
Gene_locus related to this paper: braja-bll6463 , braja-bll6820 , braja-EPHB , braja-ID930 , braja-pcaD

Title : Characterization of Bradyrhizobium japonicum pcaBDC genes involved in 4-hydroxybenzoate degradation - Lorite_1998_Biochim.Biophys.Acta_1397_257
Author(s) : Lorite MJ , Sanjuan J , Velasco L , Olivares J , Bedmar EJ
Ref : Biochimica & Biophysica Acta , 1397 :257 , 1998
Abstract : Lorite_1998_Biochim.Biophys.Acta_1397_257
ESTHER : Lorite_1998_Biochim.Biophys.Acta_1397_257
PubMedSearch : Lorite_1998_Biochim.Biophys.Acta_1397_257
PubMedID: 9582432
Gene_locus related to this paper: braja-pcaD