Report for Manning G

Title : Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat - Babbitt_2015_Database.(Oxford)_2015_bav063

Author(s) : Babbitt PC , Bagos PG , Bairoch A , Bateman A , Chatonnet A , Chen MJ , Craik DJ , Finn RD , Gloriam D , Haft DH , Henrissat B , Holliday GL , Isberg V , Kaas Q , Landsman D , Lenfant N , Manning G , Nagano N , Srinivasan N , O'Donovan C , Pruitt KD , Sowdhamini R , Rawlings ND , Saier MH, Jr. , Sharman JL , Spedding M , Tsirigos KD , Vastermark A , Vriend G

Ref : Database (Oxford) , 2015 :bav063 , 2015

Abstract : Babbitt_2015_Database.(Oxford)_2015_bav063

ESTHER : Babbitt_2015_Database.(Oxford)_2015_bav063

PubMedSearch : Babbitt_2015_Database.(Oxford)_2015_bav063

PubMedID: 26284514

Title : Key challenges for the creation and maintenance of specialist protein resources - Holliday_2015_Proteins_83_1005

Author(s) : Holliday GL , Bairoch A , Bagos PG , Chatonnet A , Craik DJ , Finn RD , Henrissat B , Landsman D , Manning G , Nagano N , O'Donovan C , Pruitt KD , Rawlings ND , Saier MH, Jr. , Sowdhamini R , Spedding M , Srinivasan N , Vriend G , Babbitt PC , Bateman A

Ref : Proteins , 83 :1005 , 2015

Abstract : Holliday_2015_Proteins_83_1005

ESTHER : Holliday_2015_Proteins_83_1005

PubMedSearch : Holliday_2015_Proteins_83_1005

PubMedID: 25820941

Title : The Selaginella genome identifies genetic changes associated with the evolution of vascular plants - Banks_2011_Science_332_960

Author(s) : Banks JA , Nishiyama T , Hasebe M , Bowman JL , Gribskov M , dePamphilis C , Albert VA , Aono N , Aoyama T , Ambrose BA , Ashton NW , Axtell MJ , Barker E , Barker MS , Bennetzen JL , Bonawitz ND , Chapple C , Cheng C , Correa LG , Dacre M , DeBarry J , Dreyer I , Elias M , Engstrom EM , Estelle M , Feng L , Finet C , Floyd SK , Frommer WB , Fujita T , Gramzow L , Gutensohn M , Harholt J , Hattori M , Heyl A , Hirai T , Hiwatashi Y , Ishikawa M , Iwata M , Karol KG , Koehler B , Kolukisaoglu U , Kubo M , Kurata T , Lalonde S , Li K , Li Y , Litt A , Lyons E , Manning G , Maruyama T , Michael TP , Mikami K , Miyazaki S , Morinaga S , Murata T , Mueller-Roeber B , Nelson DR , Obara M , Oguri Y , Olmstead RG , Onodera N , Petersen BL , Pils B , Prigge M , Rensing SA , Riano-Pachon DM , Roberts AW , Sato Y , Scheller HV , Schulz B , Schulz C , Shakirov EV , Shibagaki N , Shinohara N , Shippen DE , Sorensen I , Sotooka R , Sugimoto N , Sugita M , Sumikawa N , Tanurdzic M , Theissen G , Ulvskov P , Wakazuki S , Weng JK , Willats WW , Wipf D , Wolf PG , Yang L , Zimmer AD , Zhu Q , Mitros T , Hellsten U , Loque D , Otillar R , Salamov A , Schmutz J , Shapiro H , Lindquist E , Lucas S , Rokhsar D , Grigoriev IV

Ref : Science , 332 :960 , 2011

Abstract : Banks_2011_Science_332_960

ESTHER : Banks_2011_Science_332_960

PubMedSearch : Banks_2011_Science_332_960

PubMedID: 21551031

Gene_locus related to this paper: selml-d8qua5 , selml-d8qva1 , selml-d8qyh7 , selml-d8qza0 , selml-d8r5d4 , selml-d8r6d4 , selml-d8r504 , selml-d8r506 , selml-d8rbi1 , selml-d8rbs1 , selml-d8rck8 , selml-d8rf38 , selml-d8rkl6 , selml-d8rpr1 , selml-d8rpy0 , selml-d8ru47 , selml-d8ry54 , selml-d8rzp6 , selml-d8rzy7 , selml-d8s0c9 , selml-d8s0u3 , selml-d8s2t1 , selml-d8s3z8 , selml-d8s401 , selml-d8sba6 , selml-d8sch9 , selml-d8spq2 , selml-d8sq37 , selml-d8ssx7 , selml-d8swp2 , selml-d8t7a3 , selml-d8t8v4 , selml-d8taz4 , selml-d8tdq6 , selml-d8rai8 , selml-d8qt54 , selml-d8r2d8 , selml-d8rmd3 , selml-d8rra9 , selml-d8slg4 , selml-d8swp0 , selml-d8s7i0 , selml-d8qz37 , selml-d8sz00 , selml-d8s776 , selml-d8qw15 , selml-d8ska7 , selml-d8t0c4 , selml-d8r194 , selml-d8s5m8 , selml-d8s7r2 , selml-d8ta80 , selml-d8ru55

Title : Genomic characterization of Campylobacter jejuni strain M1 - Friis_2010_PLoS.One_5_e12253

Author(s) : Friis C , Wassenaar TM , Javed MA , Snipen L , Lagesen K , Hallin PF , Newell DG , Toszeghy M , Ridley A , Manning G , Ussery DW

Ref : PLoS ONE , 5 :e12253 , 2010

Abstract : Friis_2010_PLoS.One_5_e12253

ESTHER : Friis_2010_PLoS.One_5_e12253

PubMedSearch : Friis_2010_PLoS.One_5_e12253

PubMedID: 20865039

Gene_locus related to this paper: camjr-q5ht69

Title : Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus) - Stajich_2010_Proc.Natl.Acad.Sci.U.S.A_107_11889

Author(s) : Stajich JE , Wilke SK , Ahren D , Au CH , Birren BW , Borodovsky M , Burns C , Canback B , Casselton LA , Cheng CK , Deng J , Dietrich FS , Fargo DC , Farman ML , Gathman AC , Goldberg J , Guigo R , Hoegger PJ , Hooker JB , Huggins A , James TY , Kamada T , Kilaru S , Kodira C , Kues U , Kupfer D , Kwan HS , Lomsadze A , Li W , Lilly WW , Ma LJ , Mackey AJ , Manning G , Martin F , Muraguchi H , Natvig DO , Palmerini H , Ramesh MA , Rehmeyer CJ , Roe BA , Shenoy N , Stanke M , Ter-Hovhannisyan V , Tunlid A , Velagapudi R , Vision TJ , Zeng Q , Zolan ME , Pukkila PJ

Ref : Proc Natl Acad Sci U S A , 107 :11889 , 2010

Abstract : Stajich_2010_Proc.Natl.Acad.Sci.U.S.A_107_11889

ESTHER : Stajich_2010_Proc.Natl.Acad.Sci.U.S.A_107_11889

PubMedSearch : Stajich_2010_Proc.Natl.Acad.Sci.U.S.A_107_11889

PubMedID: 20547848

Gene_locus related to this paper: copc7-a8n2b8 , copc7-a8n3e0 , copc7-a8n3e1 , copc7-a8n6a5 , copc7-a8n8h4 , copc7-a8n702 , copc7-a8n941 , copc7-a8nkc7 , copc7-a8nll5 , copc7-a8nll6 , copc7-a8nqf4 , copc7-a8nqg3 , copc7-a8nqv8 , copc7-a8nvb5 , copc7-a8nwm2 , copc7-a8nz18 , copc7-a8p0p4 , copc7-d6rlx1 , copc7-d6rnh7 , copc7-kex1 , copci-b9u444 , copc7-a8nb05 , copc7-a8nha0 , copci-b9u443 , copc7-a8nq30 , copc7-a8nh79 , copc7-d6rm78 , copc7-a8nzs7 , copc7-axe1

Title : The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans - King_2008_Nature_451_783

Author(s) : King N , Westbrook MJ , Young SL , Kuo A , Abedin M , Chapman J , Fairclough S , Hellsten U , Isogai Y , Letunic I , Marr M , Pincus D , Putnam N , Rokas A , Wright KJ , Zuzow R , Dirks W , Good M , Goodstein D , Lemons D , Li W , Lyons JB , Morris A , Nichols S , Richter DJ , Salamov A , Sequencing JG , Bork P , Lim WA , Manning G , Miller WT , McGinnis W , Shapiro H , Tjian R , Grigoriev IV , Rokhsar D

Ref : Nature , 451 :783 , 2008

Abstract : King_2008_Nature_451_783

ESTHER : King_2008_Nature_451_783

PubMedSearch : King_2008_Nature_451_783

PubMedID: 18273011

Gene_locus related to this paper: monbe-a9up87 , monbe-a9uq69 , monbe-a9uq70 , monbe-a9uqa7 , monbe-a9urz6 , monbe-a9usu1 , monbe-a9usy8 , monbe-a9uta2 , monbe-a9uu09 , monbe-a9uxl2 , monbe-a9uy23 , monbe-a9uy95 , monbe-a9uym3 , monbe-a9uyw1 , monbe-a9uzc1 , monbe-a9v0e1 , monbe-a9v2b0 , monbe-a9v3a5 , monbe-a9v3t2 , monbe-a9v4h5 , monbe-a9v6i1 , monbe-a9v7b2 , monbe-a9v7c1 , monbe-a9v8k9 , monbe-a9v8u8 , monbe-a9v9i9 , monbe-a9v9k6 , monbe-a9v028 , monbe-a9v108 , monbe-a9v315 , monbe-a9v345 , monbe-a9v368 , monbe-a9v719 , monbe-a9v871 , monbe-a9vac5 , monbe-a9vah5 , monbe-a9van7 , monbe-a9vbp2 , monbe-a9vcn6 , monbe-a9vd99 , monbe-a9vdj5 , monbe-a9vag0

Title : Genomic minimalism in the early diverging intestinal parasite Giardia lamblia - Morrison_2007_Science_317_1921

Author(s) : Morrison HG , McArthur AG , Gillin FD , Aley SB , Adam RD , Olsen GJ , Best AA , Cande WZ , Chen F , Cipriano MJ , Davids BJ , Dawson SC , Elmendorf HG , Hehl AB , Holder ME , Huse SM , Kim UU , Lasek-Nesselquist E , Manning G , Nigam A , Nixon JE , Palm D , Passamaneck NE , Prabhu A , Reich CI , Reiner DS , Samuelson J , Svard SG , Sogin ML

Ref : Science , 317 :1921 , 2007

Abstract : Morrison_2007_Science_317_1921

ESTHER : Morrison_2007_Science_317_1921

PubMedSearch : Morrison_2007_Science_317_1921

PubMedID: 17901334

Gene_locus related to this paper: giaia-e1f0e1 , giaib-c6lwm0 , giaic-a8b7a3 , giaic-a8ba82 , giaic-a8bci8 , giaic-a8bfp3 , giaic-a8bni9 , giaic-a8bnj4 , giaic-d3kgs7 , giain-Q95WU5 , giala-ENC6

Title : Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote - Eisen_2006_PLoS.Biol_4_e286

Author(s) : Eisen JA , Coyne RS , Wu M , Wu D , Thiagarajan M , Wortman JR , Badger JH , Ren Q , Amedeo P , Jones KM , Tallon LJ , Delcher AL , Salzberg SL , Silva JC , Haas BJ , Majoros WH , Farzad M , Carlton JM , Smith RK, Jr. , Garg J , Pearlman RE , Karrer KM , Sun L , Manning G , Elde NC , Turkewitz AP , Asai DJ , Wilkes DE , Wang Y , Cai H , Collins K , Stewart BA , Lee SR , Wilamowska K , Weinberg Z , Ruzzo WL , Wloga D , Gaertig J , Frankel J , Tsao CC , Gorovsky MA , Keeling PJ , Waller RF , Patron NJ , Cherry JM , Stover NA , Krieger CJ , del Toro C , Ryder HF , Williamson SC , Barbeau RA , Hamilton EP , Orias E

Ref : PLoS Biol , 4 :e286 , 2006

Abstract : Eisen_2006_PLoS.Biol_4_e286

ESTHER : Eisen_2006_PLoS.Biol_4_e286

PubMedSearch : Eisen_2006_PLoS.Biol_4_e286

PubMedID: 16933976

Gene_locus related to this paper: tetts-i7mam3 , tetts-i7ml33

Report for Manning G

General

References (8)

Report for Manning G

General

References (8)

1. Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

2. Key challenges for the creation and maintenance of specialist protein resources

3. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

4. Genomic characterization of Campylobacter jejuni strain M1

5. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)

6. The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

7. Genomic minimalism in the early diverging intestinal parasite Giardia lamblia

8. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote